Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03773 and MPMX19_03774 overlap by 8 nucleotides MPMX19_03774 and MPMX19_03775 are separated by 2 nucleotides MPMX19_03775 and MPMX19_03776 overlap by 4 nucleotides MPMX19_03776 and MPMX19_03777 overlap by 4 nucleotides
MPMX19_03773: MPMX19_03773 - hypothetical protein, at 16,605 to 18,788
_03773
MPMX19_03774: MPMX19_03774 - hypothetical protein, at 18,781 to 19,557
_03774
MPMX19_03775: MPMX19_03775 - hypothetical protein, at 19,560 to 20,135
_03775
MPMX19_03776: MPMX19_03776 - hypothetical protein, at 20,132 to 20,497
_03776
MPMX19_03777: MPMX19_03777 - hypothetical protein, at 20,494 to 20,754
_03777
Position (kb) 18
19
20 Strain fitness (log2 ratio) -2
-1
0
1
2 at 17.875 kb on - strand, within MPMX19_03773 at 17.875 kb on - strand, within MPMX19_03773 at 17.875 kb on - strand, within MPMX19_03773 at 17.875 kb on - strand, within MPMX19_03773 at 17.875 kb on - strand, within MPMX19_03773 at 17.875 kb on - strand, within MPMX19_03773 at 17.875 kb on - strand, within MPMX19_03773 at 17.875 kb on - strand, within MPMX19_03773 at 17.875 kb on - strand, within MPMX19_03773 at 17.875 kb on - strand, within MPMX19_03773 at 17.875 kb on - strand, within MPMX19_03773 at 18.016 kb on - strand, within MPMX19_03773 at 18.016 kb on - strand, within MPMX19_03773 at 18.050 kb on - strand, within MPMX19_03773 at 18.050 kb on - strand, within MPMX19_03773 at 18.229 kb on - strand, within MPMX19_03773 at 18.229 kb on - strand, within MPMX19_03773 at 18.277 kb on - strand, within MPMX19_03773 at 18.277 kb on - strand, within MPMX19_03773 at 18.277 kb on - strand, within MPMX19_03773 at 18.277 kb on - strand, within MPMX19_03773 at 18.367 kb on - strand, within MPMX19_03773 at 18.780 kb on + strand at 18.781 kb on - strand at 18.970 kb on + strand, within MPMX19_03774 at 18.970 kb on + strand, within MPMX19_03774 at 18.970 kb on + strand, within MPMX19_03774 at 18.970 kb on + strand, within MPMX19_03774 at 18.970 kb on + strand, within MPMX19_03774 at 18.970 kb on + strand, within MPMX19_03774 at 18.971 kb on - strand, within MPMX19_03774 at 18.971 kb on - strand, within MPMX19_03774 at 18.971 kb on - strand, within MPMX19_03774 at 18.971 kb on - strand, within MPMX19_03774 at 18.971 kb on - strand, within MPMX19_03774 at 18.971 kb on - strand, within MPMX19_03774 at 18.971 kb on - strand, within MPMX19_03774 at 18.971 kb on - strand, within MPMX19_03774 at 18.971 kb on - strand, within MPMX19_03774 at 18.971 kb on - strand, within MPMX19_03774 at 18.971 kb on - strand, within MPMX19_03774 at 19.044 kb on + strand, within MPMX19_03774 at 19.044 kb on + strand, within MPMX19_03774 at 19.044 kb on + strand, within MPMX19_03774 at 19.044 kb on + strand, within MPMX19_03774 at 19.044 kb on + strand, within MPMX19_03774 at 19.044 kb on + strand, within MPMX19_03774 at 19.044 kb on + strand, within MPMX19_03774 at 19.044 kb on + strand, within MPMX19_03774 at 19.044 kb on + strand, within MPMX19_03774 at 19.044 kb on + strand, within MPMX19_03774 at 19.044 kb on + strand, within MPMX19_03774 at 19.044 kb on + strand, within MPMX19_03774 at 19.044 kb on + strand, within MPMX19_03774 at 19.044 kb on + strand, within MPMX19_03774 at 19.044 kb on + strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.045 kb on - strand, within MPMX19_03774 at 19.048 kb on + strand, within MPMX19_03774 at 19.048 kb on + strand, within MPMX19_03774 at 19.049 kb on - strand, within MPMX19_03774 at 19.049 kb on - strand, within MPMX19_03774 at 19.049 kb on - strand, within MPMX19_03774 at 19.049 kb on - strand, within MPMX19_03774 at 19.049 kb on - strand, within MPMX19_03774 at 19.049 kb on - strand, within MPMX19_03774 at 19.292 kb on - strand, within MPMX19_03774 at 19.292 kb on - strand, within MPMX19_03774 at 19.292 kb on - strand, within MPMX19_03774 at 19.292 kb on - strand, within MPMX19_03774 at 19.292 kb on - strand, within MPMX19_03774 at 19.292 kb on - strand, within MPMX19_03774 at 19.292 kb on - strand, within MPMX19_03774 at 19.572 kb on - strand at 19.578 kb on - strand at 19.578 kb on - strand at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.741 kb on - strand, within MPMX19_03775 at 19.951 kb on - strand, within MPMX19_03775 at 19.951 kb on - strand, within MPMX19_03775 at 19.951 kb on - strand, within MPMX19_03775 at 19.951 kb on - strand, within MPMX19_03775 at 19.951 kb on - strand, within MPMX19_03775 at 19.951 kb on - strand, within MPMX19_03775 at 19.951 kb on - strand, within MPMX19_03775 at 19.951 kb on - strand, within MPMX19_03775 at 19.978 kb on - strand, within MPMX19_03775 at 19.978 kb on - strand, within MPMX19_03775 at 20.020 kb on - strand, within MPMX19_03775 at 20.256 kb on - strand, within MPMX19_03776 at 20.256 kb on - strand, within MPMX19_03776 at 20.256 kb on - strand, within MPMX19_03776 at 20.256 kb on - strand, within MPMX19_03776 at 20.256 kb on - strand, within MPMX19_03776 at 20.256 kb on - strand, within MPMX19_03776 at 20.256 kb on - strand, within MPMX19_03776 at 20.256 kb on - strand, within MPMX19_03776 at 20.256 kb on - strand, within MPMX19_03776 at 20.256 kb on - strand, within MPMX19_03776 at 20.256 kb on - strand, within MPMX19_03776 at 20.256 kb on - strand, within MPMX19_03776 at 20.295 kb on - strand, within MPMX19_03776 at 20.295 kb on - strand, within MPMX19_03776 at 20.295 kb on - strand, within MPMX19_03776 at 20.295 kb on - strand, within MPMX19_03776 at 20.295 kb on - strand, within MPMX19_03776
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 17,875 - MPMX19_03773 0.58 -2.0 17,875 - MPMX19_03773 0.58 -1.5 17,875 - MPMX19_03773 0.58 -0.1 17,875 - MPMX19_03773 0.58 -0.7 17,875 - MPMX19_03773 0.58 -1.7 17,875 - MPMX19_03773 0.58 -1.1 17,875 - MPMX19_03773 0.58 -0.5 17,875 - MPMX19_03773 0.58 +0.5 17,875 - MPMX19_03773 0.58 -0.3 17,875 - MPMX19_03773 0.58 -2.1 17,875 - MPMX19_03773 0.58 -0.5 18,016 - MPMX19_03773 0.65 -0.9 18,016 - MPMX19_03773 0.65 -0.5 18,050 - MPMX19_03773 0.66 -0.9 18,050 - MPMX19_03773 0.66 -0.5 18,229 - MPMX19_03773 0.74 -0.1 18,229 - MPMX19_03773 0.74 +0.5 18,277 - MPMX19_03773 0.77 +1.0 18,277 - MPMX19_03773 0.77 +0.5 18,277 - MPMX19_03773 0.77 -0.3 18,277 - MPMX19_03773 0.77 -0.5 18,367 - MPMX19_03773 0.81 +0.5 18,780 + -0.9 18,781 - +1.5 18,970 + MPMX19_03774 0.24 -0.0 18,970 + MPMX19_03774 0.24 -1.2 18,970 + MPMX19_03774 0.24 -0.5 18,970 + MPMX19_03774 0.24 -0.5 18,970 + MPMX19_03774 0.24 -0.3 18,970 + MPMX19_03774 0.24 +0.9 18,971 - MPMX19_03774 0.24 -2.5 18,971 - MPMX19_03774 0.24 -1.9 18,971 - MPMX19_03774 0.24 -0.9 18,971 - MPMX19_03774 0.24 -1.2 18,971 - MPMX19_03774 0.24 +1.1 18,971 - MPMX19_03774 0.24 +0.1 18,971 - MPMX19_03774 0.24 -1.1 18,971 - MPMX19_03774 0.24 -1.2 18,971 - MPMX19_03774 0.24 -0.9 18,971 - MPMX19_03774 0.24 +0.1 18,971 - MPMX19_03774 0.24 -0.4 19,044 + MPMX19_03774 0.34 -0.5 19,044 + MPMX19_03774 0.34 -0.9 19,044 + MPMX19_03774 0.34 -0.1 19,044 + MPMX19_03774 0.34 -0.1 19,044 + MPMX19_03774 0.34 -0.1 19,044 + MPMX19_03774 0.34 -0.8 19,044 + MPMX19_03774 0.34 -0.7 19,044 + MPMX19_03774 0.34 +0.5 19,044 + MPMX19_03774 0.34 +0.5 19,044 + MPMX19_03774 0.34 -0.9 19,044 + MPMX19_03774 0.34 -1.3 19,044 + MPMX19_03774 0.34 -0.9 19,044 + MPMX19_03774 0.34 -0.8 19,044 + MPMX19_03774 0.34 -1.3 19,044 + MPMX19_03774 0.34 -0.7 19,045 - MPMX19_03774 0.34 -0.9 19,045 - MPMX19_03774 0.34 +0.9 19,045 - MPMX19_03774 0.34 -1.1 19,045 - MPMX19_03774 0.34 -1.7 19,045 - MPMX19_03774 0.34 -1.1 19,045 - MPMX19_03774 0.34 -2.1 19,045 - MPMX19_03774 0.34 -0.9 19,045 - MPMX19_03774 0.34 -0.1 19,045 - MPMX19_03774 0.34 -0.9 19,045 - MPMX19_03774 0.34 -1.1 19,045 - MPMX19_03774 0.34 -2.0 19,045 - MPMX19_03774 0.34 +0.9 19,045 - MPMX19_03774 0.34 +0.0 19,045 - MPMX19_03774 0.34 -0.9 19,045 - MPMX19_03774 0.34 +0.5 19,045 - MPMX19_03774 0.34 -1.1 19,045 - MPMX19_03774 0.34 -1.1 19,048 + MPMX19_03774 0.34 -0.4 19,048 + MPMX19_03774 0.34 -0.9 19,049 - MPMX19_03774 0.34 -1.0 19,049 - MPMX19_03774 0.34 -1.1 19,049 - MPMX19_03774 0.34 -1.6 19,049 - MPMX19_03774 0.34 -1.5 19,049 - MPMX19_03774 0.34 -0.7 19,049 - MPMX19_03774 0.34 -1.9 19,292 - MPMX19_03774 0.66 -0.1 19,292 - MPMX19_03774 0.66 +0.5 19,292 - MPMX19_03774 0.66 -0.9 19,292 - MPMX19_03774 0.66 -0.6 19,292 - MPMX19_03774 0.66 -2.1 19,292 - MPMX19_03774 0.66 -0.1 19,292 - MPMX19_03774 0.66 +0.1 19,572 - -0.1 19,578 - -1.1 19,578 - -1.6 19,679 - MPMX19_03775 0.21 +0.5 19,679 - MPMX19_03775 0.21 -0.1 19,679 - MPMX19_03775 0.21 -0.0 19,679 - MPMX19_03775 0.21 +0.5 19,679 - MPMX19_03775 0.21 -0.9 19,679 - MPMX19_03775 0.21 -1.2 19,679 - MPMX19_03775 0.21 +0.9 19,679 - MPMX19_03775 0.21 +0.5 19,679 - MPMX19_03775 0.21 -0.5 19,679 - MPMX19_03775 0.21 -2.0 19,679 - MPMX19_03775 0.21 -1.5 19,679 - MPMX19_03775 0.21 +1.9 19,679 - MPMX19_03775 0.21 -0.1 19,679 - MPMX19_03775 0.21 -0.1 19,679 - MPMX19_03775 0.21 -1.0 19,679 - MPMX19_03775 0.21 +0.1 19,679 - MPMX19_03775 0.21 +0.7 19,679 - MPMX19_03775 0.21 +0.2 19,741 - MPMX19_03775 0.31 -1.5 19,951 - MPMX19_03775 0.68 +0.5 19,951 - MPMX19_03775 0.68 +1.1 19,951 - MPMX19_03775 0.68 -0.1 19,951 - MPMX19_03775 0.68 -0.1 19,951 - MPMX19_03775 0.68 +0.5 19,951 - MPMX19_03775 0.68 -2.2 19,951 - MPMX19_03775 0.68 +0.0 19,951 - MPMX19_03775 0.68 +0.5 19,978 - MPMX19_03775 0.73 -0.1 19,978 - MPMX19_03775 0.73 +2.0 20,020 - MPMX19_03775 0.80 -0.5 20,256 - MPMX19_03776 0.34 +0.5 20,256 - MPMX19_03776 0.34 -0.7 20,256 - MPMX19_03776 0.34 +0.7 20,256 - MPMX19_03776 0.34 -0.1 20,256 - MPMX19_03776 0.34 +1.5 20,256 - MPMX19_03776 0.34 -1.0 20,256 - MPMX19_03776 0.34 -0.4 20,256 - MPMX19_03776 0.34 -0.1 20,256 - MPMX19_03776 0.34 -1.3 20,256 - MPMX19_03776 0.34 -1.5 20,256 - MPMX19_03776 0.34 -0.9 20,256 - MPMX19_03776 0.34 -1.7 20,295 - MPMX19_03776 0.45 -0.1 20,295 - MPMX19_03776 0.45 +1.5 20,295 - MPMX19_03776 0.45 -1.2 20,295 - MPMX19_03776 0.45 +0.5 20,295 - MPMX19_03776 0.45 +1.0
Or see this region's nucleotide sequence