Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03693

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03691 and MPMX19_03692 are separated by 83 nucleotidesMPMX19_03692 and MPMX19_03693 are separated by 70 nucleotidesMPMX19_03693 and MPMX19_03694 are separated by 279 nucleotidesMPMX19_03694 and MPMX19_03695 are separated by 11 nucleotides MPMX19_03691: MPMX19_03691 - hypothetical protein, at 1,131,665 to 1,132,102 _03691 MPMX19_03692: MPMX19_03692 - D-methionine-binding lipoprotein MetQ, at 1,132,186 to 1,133,001 _03692 MPMX19_03693: MPMX19_03693 - hypothetical protein, at 1,133,072 to 1,133,569 _03693 MPMX19_03694: MPMX19_03694 - hypothetical protein, at 1,133,849 to 1,134,226 _03694 MPMX19_03695: MPMX19_03695 - hypothetical protein, at 1,134,238 to 1,134,774 _03695 Position (kb) 1133 1134Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1132.074 kb on - strandat 1132.074 kb on - strandat 1132.100 kb on + strandat 1132.100 kb on + strandat 1132.120 kb on + strandat 1132.121 kb on - strandat 1132.174 kb on + strandat 1132.174 kb on + strandat 1132.174 kb on + strandat 1132.175 kb on - strandat 1132.175 kb on - strandat 1132.175 kb on - strandat 1132.393 kb on + strand, within MPMX19_03692at 1132.393 kb on + strand, within MPMX19_03692at 1132.393 kb on + strand, within MPMX19_03692at 1132.393 kb on + strand, within MPMX19_03692at 1132.393 kb on + strand, within MPMX19_03692at 1132.393 kb on + strand, within MPMX19_03692at 1132.393 kb on + strand, within MPMX19_03692at 1132.393 kb on + strand, within MPMX19_03692at 1132.393 kb on + strand, within MPMX19_03692at 1132.393 kb on + strand, within MPMX19_03692at 1132.393 kb on + strand, within MPMX19_03692at 1132.394 kb on - strand, within MPMX19_03692at 1132.394 kb on - strand, within MPMX19_03692at 1132.394 kb on - strand, within MPMX19_03692at 1132.394 kb on - strand, within MPMX19_03692at 1132.394 kb on - strand, within MPMX19_03692at 1132.459 kb on + strand, within MPMX19_03692at 1132.459 kb on + strand, within MPMX19_03692at 1132.460 kb on - strand, within MPMX19_03692at 1132.460 kb on - strand, within MPMX19_03692at 1132.460 kb on - strand, within MPMX19_03692at 1132.460 kb on - strand, within MPMX19_03692at 1132.491 kb on + strand, within MPMX19_03692at 1132.491 kb on + strand, within MPMX19_03692at 1132.492 kb on - strand, within MPMX19_03692at 1132.492 kb on - strand, within MPMX19_03692at 1132.492 kb on - strand, within MPMX19_03692at 1132.492 kb on - strand, within MPMX19_03692at 1132.492 kb on - strand, within MPMX19_03692at 1132.537 kb on + strand, within MPMX19_03692at 1132.537 kb on + strand, within MPMX19_03692at 1132.537 kb on + strand, within MPMX19_03692at 1132.537 kb on + strand, within MPMX19_03692at 1132.538 kb on - strand, within MPMX19_03692at 1132.538 kb on - strand, within MPMX19_03692at 1132.538 kb on - strand, within MPMX19_03692at 1132.795 kb on + strand, within MPMX19_03692at 1132.795 kb on + strand, within MPMX19_03692at 1132.795 kb on + strand, within MPMX19_03692at 1132.795 kb on + strand, within MPMX19_03692at 1132.796 kb on - strand, within MPMX19_03692at 1132.796 kb on - strand, within MPMX19_03692at 1132.796 kb on - strand, within MPMX19_03692at 1132.796 kb on - strand, within MPMX19_03692at 1132.796 kb on - strand, within MPMX19_03692at 1132.796 kb on - strand, within MPMX19_03692at 1132.796 kb on - strand, within MPMX19_03692at 1132.796 kb on - strand, within MPMX19_03692at 1133.340 kb on + strand, within MPMX19_03693at 1133.340 kb on + strand, within MPMX19_03693at 1133.340 kb on + strand, within MPMX19_03693at 1133.341 kb on - strand, within MPMX19_03693at 1133.341 kb on - strand, within MPMX19_03693at 1133.341 kb on - strand, within MPMX19_03693at 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.747 kb on + strandat 1133.748 kb on - strandat 1133.748 kb on - strandat 1133.748 kb on - strandat 1133.748 kb on - strandat 1133.748 kb on - strandat 1133.748 kb on - strandat 1133.748 kb on - strandat 1133.748 kb on - strandat 1133.748 kb on - strandat 1133.748 kb on - strandat 1133.748 kb on - strandat 1133.748 kb on - strandat 1133.803 kb on + strandat 1134.029 kb on + strand, within MPMX19_03694at 1134.030 kb on - strand, within MPMX19_03694at 1134.030 kb on - strand, within MPMX19_03694at 1134.030 kb on - strand, within MPMX19_03694at 1134.269 kb on + strandat 1134.270 kb on - strandat 1134.270 kb on - strandat 1134.335 kb on + strand, within MPMX19_03695at 1134.335 kb on + strand, within MPMX19_03695at 1134.335 kb on + strand, within MPMX19_03695at 1134.335 kb on + strand, within MPMX19_03695at 1134.335 kb on + strand, within MPMX19_03695at 1134.335 kb on + strand, within MPMX19_03695at 1134.335 kb on + strand, within MPMX19_03695at 1134.335 kb on + strand, within MPMX19_03695at 1134.335 kb on + strand, within MPMX19_03695at 1134.335 kb on + strand, within MPMX19_03695at 1134.335 kb on + strand, within MPMX19_03695at 1134.336 kb on - strand, within MPMX19_03695at 1134.336 kb on - strand, within MPMX19_03695at 1134.336 kb on - strand, within MPMX19_03695

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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1,132,074 - -0.6
1,132,074 - -0.3
1,132,100 + -0.6
1,132,100 + -0.2
1,132,120 + -0.8
1,132,121 - -0.5
1,132,174 + -1.2
1,132,174 + -0.9
1,132,174 + +0.1
1,132,175 - +0.1
1,132,175 - -0.0
1,132,175 - +0.7
1,132,393 + MPMX19_03692 0.25 +0.1
1,132,393 + MPMX19_03692 0.25 -3.3
1,132,393 + MPMX19_03692 0.25 -2.0
1,132,393 + MPMX19_03692 0.25 +0.4
1,132,393 + MPMX19_03692 0.25 -1.5
1,132,393 + MPMX19_03692 0.25 -1.8
1,132,393 + MPMX19_03692 0.25 -1.6
1,132,393 + MPMX19_03692 0.25 +0.0
1,132,393 + MPMX19_03692 0.25 -0.3
1,132,393 + MPMX19_03692 0.25 -1.3
1,132,393 + MPMX19_03692 0.25 -1.5
1,132,394 - MPMX19_03692 0.25 +0.4
1,132,394 - MPMX19_03692 0.25 -2.1
1,132,394 - MPMX19_03692 0.25 -0.6
1,132,394 - MPMX19_03692 0.25 +2.3
1,132,394 - MPMX19_03692 0.25 -1.1
1,132,459 + MPMX19_03692 0.33 -1.5
1,132,459 + MPMX19_03692 0.33 -0.9
1,132,460 - MPMX19_03692 0.34 +0.1
1,132,460 - MPMX19_03692 0.34 -0.5
1,132,460 - MPMX19_03692 0.34 -0.9
1,132,460 - MPMX19_03692 0.34 +0.2
1,132,491 + MPMX19_03692 0.37 +1.0
1,132,491 + MPMX19_03692 0.37 -0.3
1,132,492 - MPMX19_03692 0.38 -0.1
1,132,492 - MPMX19_03692 0.38 +0.1
1,132,492 - MPMX19_03692 0.38 +0.4
1,132,492 - MPMX19_03692 0.38 -0.1
1,132,492 - MPMX19_03692 0.38 -0.3
1,132,537 + MPMX19_03692 0.43 +0.3
1,132,537 + MPMX19_03692 0.43 +0.5
1,132,537 + MPMX19_03692 0.43 +1.1
1,132,537 + MPMX19_03692 0.43 -0.3
1,132,538 - MPMX19_03692 0.43 -0.3
1,132,538 - MPMX19_03692 0.43 -2.8
1,132,538 - MPMX19_03692 0.43 -0.6
1,132,795 + MPMX19_03692 0.75 -0.3
1,132,795 + MPMX19_03692 0.75 -0.6
1,132,795 + MPMX19_03692 0.75 +0.5
1,132,795 + MPMX19_03692 0.75 -0.9
1,132,796 - MPMX19_03692 0.75 -0.9
1,132,796 - MPMX19_03692 0.75 +0.5
1,132,796 - MPMX19_03692 0.75 -0.3
1,132,796 - MPMX19_03692 0.75 +0.1
1,132,796 - MPMX19_03692 0.75 +0.1
1,132,796 - MPMX19_03692 0.75 -0.7
1,132,796 - MPMX19_03692 0.75 +0.7
1,132,796 - MPMX19_03692 0.75 +0.6
1,133,340 + MPMX19_03693 0.54 -2.8
1,133,340 + MPMX19_03693 0.54 +0.7
1,133,340 + MPMX19_03693 0.54 -1.0
1,133,341 - MPMX19_03693 0.54 -1.0
1,133,341 - MPMX19_03693 0.54 -2.1
1,133,341 - MPMX19_03693 0.54 -1.1
1,133,747 + +0.9
1,133,747 + -1.8
1,133,747 + -0.9
1,133,747 + -0.8
1,133,747 + +1.1
1,133,747 + -1.8
1,133,747 + -1.0
1,133,747 + +0.1
1,133,747 + +0.1
1,133,747 + +0.7
1,133,747 + -0.3
1,133,747 + -0.5
1,133,747 + -1.0
1,133,747 + -0.8
1,133,747 + +0.7
1,133,747 + -0.3
1,133,747 + +0.7
1,133,748 - +0.1
1,133,748 - -0.3
1,133,748 - -0.0
1,133,748 - -1.1
1,133,748 - -0.2
1,133,748 - -0.1
1,133,748 - +1.7
1,133,748 - -1.1
1,133,748 - +1.7
1,133,748 - -1.1
1,133,748 - +0.5
1,133,748 - -0.6
1,133,803 + +0.4
1,134,029 + MPMX19_03694 0.48 -0.4
1,134,030 - MPMX19_03694 0.48 +0.4
1,134,030 - MPMX19_03694 0.48 +0.7
1,134,030 - MPMX19_03694 0.48 -0.9
1,134,269 + -1.0
1,134,270 - -0.6
1,134,270 - -0.9
1,134,335 + MPMX19_03695 0.18 -0.3
1,134,335 + MPMX19_03695 0.18 -0.3
1,134,335 + MPMX19_03695 0.18 +0.4
1,134,335 + MPMX19_03695 0.18 -1.7
1,134,335 + MPMX19_03695 0.18 -2.2
1,134,335 + MPMX19_03695 0.18 -0.3
1,134,335 + MPMX19_03695 0.18 +0.3
1,134,335 + MPMX19_03695 0.18 -1.1
1,134,335 + MPMX19_03695 0.18 -1.5
1,134,335 + MPMX19_03695 0.18 -0.2
1,134,335 + MPMX19_03695 0.18 +0.7
1,134,336 - MPMX19_03695 0.18 -0.5
1,134,336 - MPMX19_03695 0.18 +0.7
1,134,336 - MPMX19_03695 0.18 +0.7

Or see this region's nucleotide sequence