Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03478 and MPMX19_03479 are separated by 97 nucleotides MPMX19_03479 and MPMX19_03480 are separated by 142 nucleotides MPMX19_03480 and MPMX19_03481 are separated by 53 nucleotides
MPMX19_03478: MPMX19_03478 - Glutamine-dependent NAD(+) synthetase, at 889,465 to 891,174
_03478
MPMX19_03479: MPMX19_03479 - Bifunctional NMN adenylyltransferase/Nudix hydrolase, at 891,272 to 892,405
_03479
MPMX19_03480: MPMX19_03480 - hypothetical protein, at 892,548 to 892,889
_03480
MPMX19_03481: MPMX19_03481 - hypothetical protein, at 892,943 to 893,512
_03481
Position (kb) 891
892
893 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 890.315 kb on + strand, within MPMX19_03478 at 890.315 kb on + strand, within MPMX19_03478 at 890.316 kb on - strand, within MPMX19_03478 at 890.316 kb on - strand, within MPMX19_03478 at 890.316 kb on - strand, within MPMX19_03478 at 890.316 kb on - strand, within MPMX19_03478 at 890.316 kb on - strand, within MPMX19_03478 at 890.345 kb on + strand, within MPMX19_03478 at 890.507 kb on + strand, within MPMX19_03478 at 890.507 kb on + strand, within MPMX19_03478 at 890.507 kb on + strand, within MPMX19_03478 at 890.507 kb on + strand, within MPMX19_03478 at 890.507 kb on + strand, within MPMX19_03478 at 890.507 kb on + strand, within MPMX19_03478 at 890.507 kb on + strand, within MPMX19_03478 at 890.508 kb on - strand, within MPMX19_03478 at 890.508 kb on - strand, within MPMX19_03478 at 890.508 kb on - strand, within MPMX19_03478 at 890.508 kb on - strand, within MPMX19_03478 at 890.508 kb on - strand, within MPMX19_03478 at 890.508 kb on - strand, within MPMX19_03478 at 890.558 kb on + strand, within MPMX19_03478 at 890.558 kb on + strand, within MPMX19_03478 at 890.558 kb on + strand, within MPMX19_03478 at 890.559 kb on - strand, within MPMX19_03478 at 890.559 kb on - strand, within MPMX19_03478 at 890.798 kb on + strand, within MPMX19_03478 at 890.798 kb on + strand, within MPMX19_03478 at 890.798 kb on + strand, within MPMX19_03478 at 890.798 kb on + strand, within MPMX19_03478 at 890.798 kb on + strand, within MPMX19_03478 at 890.798 kb on + strand, within MPMX19_03478 at 890.799 kb on - strand, within MPMX19_03478 at 890.799 kb on - strand, within MPMX19_03478 at 890.799 kb on - strand, within MPMX19_03478 at 890.799 kb on - strand, within MPMX19_03478 at 890.799 kb on - strand, within MPMX19_03478 at 890.876 kb on + strand, within MPMX19_03478 at 890.876 kb on + strand, within MPMX19_03478 at 890.876 kb on + strand, within MPMX19_03478 at 890.876 kb on + strand, within MPMX19_03478 at 890.876 kb on + strand, within MPMX19_03478 at 890.876 kb on + strand, within MPMX19_03478 at 890.877 kb on - strand, within MPMX19_03478 at 890.877 kb on - strand, within MPMX19_03478 at 890.877 kb on - strand, within MPMX19_03478 at 890.877 kb on - strand, within MPMX19_03478 at 891.162 kb on + strand at 891.162 kb on + strand at 891.162 kb on + strand at 891.162 kb on + strand at 891.162 kb on + strand at 891.162 kb on + strand at 891.162 kb on + strand at 891.162 kb on + strand at 891.162 kb on + strand at 891.162 kb on + strand at 891.162 kb on + strand at 891.162 kb on + strand at 891.163 kb on - strand at 891.163 kb on - strand at 891.163 kb on - strand at 891.163 kb on - strand at 891.163 kb on - strand at 891.163 kb on - strand at 891.312 kb on + strand at 891.312 kb on + strand at 891.312 kb on + strand at 891.312 kb on + strand at 891.312 kb on + strand at 891.735 kb on + strand, within MPMX19_03479 at 891.735 kb on + strand, within MPMX19_03479 at 891.735 kb on + strand, within MPMX19_03479 at 891.736 kb on - strand, within MPMX19_03479 at 891.747 kb on + strand, within MPMX19_03479 at 891.747 kb on + strand, within MPMX19_03479 at 891.747 kb on + strand, within MPMX19_03479 at 891.747 kb on + strand, within MPMX19_03479 at 891.747 kb on + strand, within MPMX19_03479 at 891.747 kb on + strand, within MPMX19_03479 at 891.747 kb on + strand, within MPMX19_03479 at 891.748 kb on - strand, within MPMX19_03479 at 891.774 kb on + strand, within MPMX19_03479 at 891.774 kb on + strand, within MPMX19_03479 at 891.774 kb on + strand, within MPMX19_03479 at 891.774 kb on + strand, within MPMX19_03479 at 891.870 kb on + strand, within MPMX19_03479 at 891.870 kb on + strand, within MPMX19_03479 at 891.870 kb on + strand, within MPMX19_03479 at 891.870 kb on + strand, within MPMX19_03479 at 891.870 kb on + strand, within MPMX19_03479 at 891.870 kb on + strand, within MPMX19_03479 at 891.871 kb on - strand, within MPMX19_03479 at 891.951 kb on + strand, within MPMX19_03479 at 891.951 kb on + strand, within MPMX19_03479 at 891.951 kb on + strand, within MPMX19_03479 at 891.951 kb on + strand, within MPMX19_03479 at 891.951 kb on + strand, within MPMX19_03479 at 891.951 kb on + strand, within MPMX19_03479 at 891.952 kb on - strand, within MPMX19_03479 at 891.952 kb on - strand, within MPMX19_03479 at 891.954 kb on + strand, within MPMX19_03479 at 891.954 kb on + strand, within MPMX19_03479 at 891.954 kb on + strand, within MPMX19_03479 at 891.954 kb on + strand, within MPMX19_03479 at 891.954 kb on + strand, within MPMX19_03479 at 891.955 kb on - strand, within MPMX19_03479 at 891.955 kb on - strand, within MPMX19_03479 at 891.955 kb on - strand, within MPMX19_03479 at 891.955 kb on - strand, within MPMX19_03479 at 891.955 kb on - strand, within MPMX19_03479 at 891.955 kb on - strand, within MPMX19_03479 at 891.955 kb on - strand, within MPMX19_03479 at 891.955 kb on - strand, within MPMX19_03479 at 891.955 kb on - strand, within MPMX19_03479 at 891.955 kb on - strand, within MPMX19_03479 at 892.084 kb on - strand, within MPMX19_03479 at 892.084 kb on - strand, within MPMX19_03479 at 892.442 kb on + strand at 892.462 kb on + strand at 892.549 kb on + strand at 892.549 kb on + strand at 892.549 kb on + strand at 892.550 kb on - strand at 892.591 kb on + strand, within MPMX19_03480 at 892.591 kb on + strand, within MPMX19_03480 at 892.591 kb on + strand, within MPMX19_03480 at 892.591 kb on + strand, within MPMX19_03480 at 892.591 kb on + strand, within MPMX19_03480 at 892.591 kb on + strand, within MPMX19_03480 at 892.592 kb on - strand, within MPMX19_03480 at 892.592 kb on - strand, within MPMX19_03480 at 892.592 kb on - strand, within MPMX19_03480 at 892.592 kb on - strand, within MPMX19_03480 at 892.592 kb on - strand, within MPMX19_03480 at 892.592 kb on - strand, within MPMX19_03480 at 892.592 kb on - strand, within MPMX19_03480 at 892.593 kb on - strand, within MPMX19_03480 at 892.846 kb on + strand, within MPMX19_03480 at 892.846 kb on + strand, within MPMX19_03480 at 892.846 kb on + strand, within MPMX19_03480 at 892.846 kb on + strand, within MPMX19_03480 at 892.846 kb on + strand, within MPMX19_03480 at 892.847 kb on - strand, within MPMX19_03480 at 892.847 kb on - strand, within MPMX19_03480 at 892.847 kb on - strand, within MPMX19_03480 at 892.847 kb on - strand, within MPMX19_03480 at 892.847 kb on - strand, within MPMX19_03480 at 892.847 kb on - strand, within MPMX19_03480 at 892.847 kb on - strand, within MPMX19_03480 at 893.184 kb on + strand, within MPMX19_03481 at 893.184 kb on + strand, within MPMX19_03481 at 893.184 kb on + strand, within MPMX19_03481 at 893.184 kb on + strand, within MPMX19_03481 at 893.185 kb on - strand, within MPMX19_03481 at 893.185 kb on - strand, within MPMX19_03481 at 893.185 kb on - strand, within MPMX19_03481 at 893.185 kb on - strand, within MPMX19_03481 at 893.185 kb on - strand, within MPMX19_03481 at 893.185 kb on - strand, within MPMX19_03481 at 893.185 kb on - strand, within MPMX19_03481 at 893.185 kb on - strand, within MPMX19_03481 at 893.235 kb on + strand, within MPMX19_03481 at 893.235 kb on + strand, within MPMX19_03481 at 893.235 kb on + strand, within MPMX19_03481 at 893.235 kb on + strand, within MPMX19_03481 at 893.235 kb on + strand, within MPMX19_03481 at 893.235 kb on + strand, within MPMX19_03481 at 893.236 kb on - strand, within MPMX19_03481 at 893.280 kb on + strand, within MPMX19_03481 at 893.280 kb on + strand, within MPMX19_03481 at 893.280 kb on + strand, within MPMX19_03481 at 893.280 kb on + strand, within MPMX19_03481 at 893.281 kb on - strand, within MPMX19_03481 at 893.281 kb on - strand, within MPMX19_03481 at 893.281 kb on - strand, within MPMX19_03481 at 893.281 kb on - strand, within MPMX19_03481 at 893.313 kb on + strand, within MPMX19_03481 at 893.313 kb on + strand, within MPMX19_03481 at 893.313 kb on + strand, within MPMX19_03481 at 893.313 kb on + strand, within MPMX19_03481 at 893.313 kb on + strand, within MPMX19_03481 at 893.313 kb on + strand, within MPMX19_03481 at 893.313 kb on + strand, within MPMX19_03481
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 890,315 + MPMX19_03478 0.50 -0.9 890,315 + MPMX19_03478 0.50 -0.8 890,316 - MPMX19_03478 0.50 +1.1 890,316 - MPMX19_03478 0.50 -1.5 890,316 - MPMX19_03478 0.50 -0.3 890,316 - MPMX19_03478 0.50 -1.4 890,316 - MPMX19_03478 0.50 +0.1 890,345 + MPMX19_03478 0.51 +0.1 890,507 + MPMX19_03478 0.61 -1.3 890,507 + MPMX19_03478 0.61 -0.2 890,507 + MPMX19_03478 0.61 +0.1 890,507 + MPMX19_03478 0.61 -0.3 890,507 + MPMX19_03478 0.61 -2.5 890,507 + MPMX19_03478 0.61 -0.2 890,507 + MPMX19_03478 0.61 -2.1 890,508 - MPMX19_03478 0.61 -2.1 890,508 - MPMX19_03478 0.61 -0.3 890,508 - MPMX19_03478 0.61 -0.1 890,508 - MPMX19_03478 0.61 -0.9 890,508 - MPMX19_03478 0.61 -1.3 890,508 - MPMX19_03478 0.61 -0.5 890,558 + MPMX19_03478 0.64 +2.1 890,558 + MPMX19_03478 0.64 -1.3 890,558 + MPMX19_03478 0.64 -1.0 890,559 - MPMX19_03478 0.64 -0.8 890,559 - MPMX19_03478 0.64 -0.9 890,798 + MPMX19_03478 0.78 -0.0 890,798 + MPMX19_03478 0.78 -0.3 890,798 + MPMX19_03478 0.78 -1.8 890,798 + MPMX19_03478 0.78 -1.8 890,798 + MPMX19_03478 0.78 +0.1 890,798 + MPMX19_03478 0.78 -1.1 890,799 - MPMX19_03478 0.78 -0.6 890,799 - MPMX19_03478 0.78 -1.3 890,799 - MPMX19_03478 0.78 +1.1 890,799 - MPMX19_03478 0.78 -0.1 890,799 - MPMX19_03478 0.78 -0.9 890,876 + MPMX19_03478 0.83 -0.6 890,876 + MPMX19_03478 0.83 -0.5 890,876 + MPMX19_03478 0.83 +0.2 890,876 + MPMX19_03478 0.83 -0.3 890,876 + MPMX19_03478 0.83 -0.9 890,876 + MPMX19_03478 0.83 -0.3 890,877 - MPMX19_03478 0.83 +1.1 890,877 - MPMX19_03478 0.83 -1.3 890,877 - MPMX19_03478 0.83 -0.8 890,877 - MPMX19_03478 0.83 +0.1 891,162 + +1.1 891,162 + -1.2 891,162 + -1.8 891,162 + -0.0 891,162 + -1.5 891,162 + +1.7 891,162 + -0.0 891,162 + +0.5 891,162 + +0.9 891,162 + +1.3 891,162 + -0.9 891,162 + -2.8 891,163 - -1.1 891,163 - -1.6 891,163 - +1.1 891,163 - -0.3 891,163 - -2.1 891,163 - +0.1 891,312 + -0.3 891,312 + -1.1 891,312 + -0.3 891,312 + -0.3 891,312 + -0.3 891,735 + MPMX19_03479 0.41 -2.0 891,735 + MPMX19_03479 0.41 -1.4 891,735 + MPMX19_03479 0.41 -0.3 891,736 - MPMX19_03479 0.41 -1.1 891,747 + MPMX19_03479 0.42 -2.0 891,747 + MPMX19_03479 0.42 -0.3 891,747 + MPMX19_03479 0.42 -1.8 891,747 + MPMX19_03479 0.42 +0.1 891,747 + MPMX19_03479 0.42 -1.6 891,747 + MPMX19_03479 0.42 -1.0 891,747 + MPMX19_03479 0.42 +0.9 891,748 - MPMX19_03479 0.42 -0.8 891,774 + MPMX19_03479 0.44 +0.1 891,774 + MPMX19_03479 0.44 -1.9 891,774 + MPMX19_03479 0.44 -0.5 891,774 + MPMX19_03479 0.44 -1.4 891,870 + MPMX19_03479 0.53 +0.4 891,870 + MPMX19_03479 0.53 -0.6 891,870 + MPMX19_03479 0.53 -0.3 891,870 + MPMX19_03479 0.53 -0.1 891,870 + MPMX19_03479 0.53 -1.0 891,870 + MPMX19_03479 0.53 +0.2 891,871 - MPMX19_03479 0.53 +0.1 891,951 + MPMX19_03479 0.60 -1.8 891,951 + MPMX19_03479 0.60 +0.0 891,951 + MPMX19_03479 0.60 -0.0 891,951 + MPMX19_03479 0.60 -0.9 891,951 + MPMX19_03479 0.60 -1.3 891,951 + MPMX19_03479 0.60 -1.3 891,952 - MPMX19_03479 0.60 +0.1 891,952 - MPMX19_03479 0.60 +0.1 891,954 + MPMX19_03479 0.60 -1.1 891,954 + MPMX19_03479 0.60 -1.9 891,954 + MPMX19_03479 0.60 -0.6 891,954 + MPMX19_03479 0.60 -0.8 891,954 + MPMX19_03479 0.60 -0.3 891,955 - MPMX19_03479 0.60 -0.1 891,955 - MPMX19_03479 0.60 +1.7 891,955 - MPMX19_03479 0.60 -0.9 891,955 - MPMX19_03479 0.60 -0.3 891,955 - MPMX19_03479 0.60 -0.3 891,955 - MPMX19_03479 0.60 -0.9 891,955 - MPMX19_03479 0.60 +0.1 891,955 - MPMX19_03479 0.60 +1.7 891,955 - MPMX19_03479 0.60 -0.3 891,955 - MPMX19_03479 0.60 -1.5 892,084 - MPMX19_03479 0.72 -0.6 892,084 - MPMX19_03479 0.72 +0.1 892,442 + +1.1 892,462 + -0.3 892,549 + -0.0 892,549 + +0.3 892,549 + -0.3 892,550 - -1.9 892,591 + MPMX19_03480 0.13 -0.3 892,591 + MPMX19_03480 0.13 -2.2 892,591 + MPMX19_03480 0.13 +1.1 892,591 + MPMX19_03480 0.13 +0.1 892,591 + MPMX19_03480 0.13 +1.0 892,591 + MPMX19_03480 0.13 +0.7 892,592 - MPMX19_03480 0.13 -1.5 892,592 - MPMX19_03480 0.13 -0.5 892,592 - MPMX19_03480 0.13 +0.8 892,592 - MPMX19_03480 0.13 -0.7 892,592 - MPMX19_03480 0.13 -0.3 892,592 - MPMX19_03480 0.13 -1.1 892,592 - MPMX19_03480 0.13 -1.8 892,593 - MPMX19_03480 0.13 -0.3 892,846 + MPMX19_03480 0.87 +0.1 892,846 + MPMX19_03480 0.87 +0.3 892,846 + MPMX19_03480 0.87 -1.1 892,846 + MPMX19_03480 0.87 -0.2 892,846 + MPMX19_03480 0.87 -1.1 892,847 - MPMX19_03480 0.87 -2.6 892,847 - MPMX19_03480 0.87 +1.1 892,847 - MPMX19_03480 0.87 +0.4 892,847 - MPMX19_03480 0.87 +0.7 892,847 - MPMX19_03480 0.87 -0.7 892,847 - MPMX19_03480 0.87 +0.7 892,847 - MPMX19_03480 0.87 -0.3 893,184 + MPMX19_03481 0.42 -0.6 893,184 + MPMX19_03481 0.42 +0.7 893,184 + MPMX19_03481 0.42 -2.7 893,184 + MPMX19_03481 0.42 -0.3 893,185 - MPMX19_03481 0.42 -1.3 893,185 - MPMX19_03481 0.42 +0.2 893,185 - MPMX19_03481 0.42 +0.6 893,185 - MPMX19_03481 0.42 -1.3 893,185 - MPMX19_03481 0.42 -0.6 893,185 - MPMX19_03481 0.42 -0.5 893,185 - MPMX19_03481 0.42 -1.3 893,185 - MPMX19_03481 0.42 -0.5 893,235 + MPMX19_03481 0.51 +0.3 893,235 + MPMX19_03481 0.51 -0.9 893,235 + MPMX19_03481 0.51 -0.6 893,235 + MPMX19_03481 0.51 +1.5 893,235 + MPMX19_03481 0.51 +0.7 893,235 + MPMX19_03481 0.51 -0.3 893,236 - MPMX19_03481 0.51 -1.3 893,280 + MPMX19_03481 0.59 -0.1 893,280 + MPMX19_03481 0.59 -0.0 893,280 + MPMX19_03481 0.59 +0.1 893,280 + MPMX19_03481 0.59 +0.1 893,281 - MPMX19_03481 0.59 +0.5 893,281 - MPMX19_03481 0.59 +0.9 893,281 - MPMX19_03481 0.59 +1.4 893,281 - MPMX19_03481 0.59 -0.2 893,313 + MPMX19_03481 0.65 +0.4 893,313 + MPMX19_03481 0.65 -1.1 893,313 + MPMX19_03481 0.65 +0.2 893,313 + MPMX19_03481 0.65 +3.7 893,313 + MPMX19_03481 0.65 -1.5 893,313 + MPMX19_03481 0.65 -0.1 893,313 + MPMX19_03481 0.65 -0.9
Or see this region's nucleotide sequence