Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03461

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03460 and MPMX19_03461 overlap by 4 nucleotidesMPMX19_03461 and MPMX19_03462 are separated by 392 nucleotides MPMX19_03460: MPMX19_03460 - Signal transduction histidine-protein kinase AtoS, at 868,639 to 870,501 _03460 MPMX19_03461: MPMX19_03461 - Regulatory protein AtoC, at 870,498 to 871,919 _03461 MPMX19_03462: MPMX19_03462 - Acetate CoA-transferase subunit alpha, at 872,312 to 872,974 _03462 Position (kb) 870 871 872Strain fitness (log2 ratio) -2 -1 0 1at 869.596 kb on + strand, within MPMX19_03460at 869.596 kb on + strand, within MPMX19_03460at 869.596 kb on + strand, within MPMX19_03460at 869.596 kb on + strand, within MPMX19_03460at 869.597 kb on - strand, within MPMX19_03460at 869.597 kb on - strand, within MPMX19_03460at 869.956 kb on + strand, within MPMX19_03460at 869.956 kb on + strand, within MPMX19_03460at 869.956 kb on + strand, within MPMX19_03460at 869.957 kb on - strand, within MPMX19_03460at 869.957 kb on - strand, within MPMX19_03460at 869.957 kb on - strand, within MPMX19_03460at 869.957 kb on - strand, within MPMX19_03460at 870.778 kb on - strand, within MPMX19_03461at 870.778 kb on - strand, within MPMX19_03461at 870.778 kb on - strand, within MPMX19_03461at 870.828 kb on + strand, within MPMX19_03461at 870.828 kb on + strand, within MPMX19_03461at 870.828 kb on + strand, within MPMX19_03461at 870.828 kb on + strand, within MPMX19_03461at 870.829 kb on - strand, within MPMX19_03461at 870.829 kb on - strand, within MPMX19_03461at 870.829 kb on - strand, within MPMX19_03461at 870.829 kb on - strand, within MPMX19_03461at 870.829 kb on - strand, within MPMX19_03461at 870.829 kb on - strand, within MPMX19_03461at 870.829 kb on - strand, within MPMX19_03461at 870.943 kb on - strand, within MPMX19_03461at 871.086 kb on + strand, within MPMX19_03461at 871.086 kb on + strand, within MPMX19_03461at 871.086 kb on + strand, within MPMX19_03461at 871.086 kb on + strand, within MPMX19_03461at 871.086 kb on + strand, within MPMX19_03461at 871.086 kb on + strand, within MPMX19_03461at 871.086 kb on + strand, within MPMX19_03461at 871.086 kb on + strand, within MPMX19_03461at 871.087 kb on - strand, within MPMX19_03461at 871.087 kb on - strand, within MPMX19_03461at 871.087 kb on - strand, within MPMX19_03461at 871.087 kb on - strand, within MPMX19_03461at 871.087 kb on - strand, within MPMX19_03461at 871.087 kb on - strand, within MPMX19_03461at 871.353 kb on - strand, within MPMX19_03461at 871.431 kb on + strand, within MPMX19_03461at 871.432 kb on - strand, within MPMX19_03461at 871.432 kb on - strand, within MPMX19_03461at 871.590 kb on + strand, within MPMX19_03461at 871.591 kb on - strand, within MPMX19_03461at 871.591 kb on - strand, within MPMX19_03461at 871.890 kb on + strandat 871.890 kb on + strandat 871.890 kb on + strandat 871.890 kb on + strandat 871.890 kb on + strandat 871.891 kb on - strandat 871.892 kb on + strandat 871.892 kb on + strandat 871.892 kb on + strandat 871.892 kb on + strandat 871.892 kb on + strandat 871.893 kb on - strandat 871.893 kb on - strandat 871.893 kb on - strandat 871.893 kb on - strandat 871.905 kb on + strandat 871.906 kb on - strandat 871.930 kb on + strandat 871.930 kb on + strandat 871.931 kb on - strandat 872.103 kb on + strandat 872.104 kb on - strandat 872.114 kb on + strandat 872.114 kb on + strandat 872.115 kb on - strandat 872.116 kb on + strandat 872.317 kb on + strandat 872.318 kb on - strandat 872.318 kb on - strandat 872.729 kb on + strand, within MPMX19_03462at 872.730 kb on + strand, within MPMX19_03462at 872.730 kb on - strand, within MPMX19_03462at 872.730 kb on - strand, within MPMX19_03462at 872.730 kb on - strand, within MPMX19_03462at 872.789 kb on + strand, within MPMX19_03462at 872.789 kb on + strand, within MPMX19_03462at 872.789 kb on + strand, within MPMX19_03462at 872.789 kb on + strand, within MPMX19_03462at 872.789 kb on + strand, within MPMX19_03462at 872.789 kb on + strand, within MPMX19_03462at 872.790 kb on - strand, within MPMX19_03462at 872.790 kb on - strand, within MPMX19_03462

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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869,596 + MPMX19_03460 0.51 -0.6
869,596 + MPMX19_03460 0.51 -0.5
869,596 + MPMX19_03460 0.51 +1.7
869,596 + MPMX19_03460 0.51 -0.7
869,597 - MPMX19_03460 0.51 -1.5
869,597 - MPMX19_03460 0.51 +1.3
869,956 + MPMX19_03460 0.71 +0.0
869,956 + MPMX19_03460 0.71 +0.1
869,956 + MPMX19_03460 0.71 -0.9
869,957 - MPMX19_03460 0.71 -1.1
869,957 - MPMX19_03460 0.71 -0.5
869,957 - MPMX19_03460 0.71 -0.7
869,957 - MPMX19_03460 0.71 +0.8
870,778 - MPMX19_03461 0.20 +1.7
870,778 - MPMX19_03461 0.20 -0.3
870,778 - MPMX19_03461 0.20 +0.1
870,828 + MPMX19_03461 0.23 -0.5
870,828 + MPMX19_03461 0.23 +0.4
870,828 + MPMX19_03461 0.23 -0.4
870,828 + MPMX19_03461 0.23 -0.6
870,829 - MPMX19_03461 0.23 +0.1
870,829 - MPMX19_03461 0.23 -0.9
870,829 - MPMX19_03461 0.23 -0.2
870,829 - MPMX19_03461 0.23 -0.9
870,829 - MPMX19_03461 0.23 -0.9
870,829 - MPMX19_03461 0.23 -1.5
870,829 - MPMX19_03461 0.23 -0.8
870,943 - MPMX19_03461 0.31 -0.9
871,086 + MPMX19_03461 0.41 +1.7
871,086 + MPMX19_03461 0.41 -0.5
871,086 + MPMX19_03461 0.41 +0.7
871,086 + MPMX19_03461 0.41 +0.1
871,086 + MPMX19_03461 0.41 -0.9
871,086 + MPMX19_03461 0.41 -1.2
871,086 + MPMX19_03461 0.41 -0.0
871,086 + MPMX19_03461 0.41 -1.5
871,087 - MPMX19_03461 0.41 -0.1
871,087 - MPMX19_03461 0.41 -2.1
871,087 - MPMX19_03461 0.41 -1.0
871,087 - MPMX19_03461 0.41 -1.5
871,087 - MPMX19_03461 0.41 -1.1
871,087 - MPMX19_03461 0.41 -0.6
871,353 - MPMX19_03461 0.60 +0.7
871,431 + MPMX19_03461 0.66 -0.6
871,432 - MPMX19_03461 0.66 -0.3
871,432 - MPMX19_03461 0.66 -0.5
871,590 + MPMX19_03461 0.77 -0.6
871,591 - MPMX19_03461 0.77 -0.3
871,591 - MPMX19_03461 0.77 -1.5
871,890 + -0.9
871,890 + -1.5
871,890 + -2.0
871,890 + -2.7
871,890 + +0.1
871,891 - +0.7
871,892 + -0.9
871,892 + -0.3
871,892 + -1.6
871,892 + -1.3
871,892 + -1.0
871,893 - -1.3
871,893 - +0.9
871,893 - -0.3
871,893 - -0.6
871,905 + -0.8
871,906 - +0.0
871,930 + -1.8
871,930 + +0.1
871,931 - -2.2
872,103 + -1.1
872,104 - -0.3
872,114 + +0.1
872,114 + -0.3
872,115 - -0.7
872,116 + -1.3
872,317 + -1.9
872,318 - -0.1
872,318 - -0.3
872,729 + MPMX19_03462 0.63 +0.5
872,730 + MPMX19_03462 0.63 -0.6
872,730 - MPMX19_03462 0.63 +0.4
872,730 - MPMX19_03462 0.63 +1.7
872,730 - MPMX19_03462 0.63 -1.2
872,789 + MPMX19_03462 0.72 +0.1
872,789 + MPMX19_03462 0.72 +0.5
872,789 + MPMX19_03462 0.72 +1.7
872,789 + MPMX19_03462 0.72 -0.9
872,789 + MPMX19_03462 0.72 -2.3
872,789 + MPMX19_03462 0.72 -0.5
872,790 - MPMX19_03462 0.72 -0.6
872,790 - MPMX19_03462 0.72 -1.3

Or see this region's nucleotide sequence