Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03432

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03430 and MPMX19_03431 overlap by 4 nucleotidesMPMX19_03431 and MPMX19_03432 are separated by 256 nucleotidesMPMX19_03432 and MPMX19_03433 overlap by 1 nucleotidesMPMX19_03433 and MPMX19_03434 are separated by 27 nucleotides MPMX19_03430: MPMX19_03430 - hypothetical protein, at 823,323 to 823,922 _03430 MPMX19_03431: MPMX19_03431 - hypothetical protein, at 823,919 to 824,476 _03431 MPMX19_03432: MPMX19_03432 - hypothetical protein, at 824,733 to 825,530 _03432 MPMX19_03433: MPMX19_03433 - hypothetical protein, at 825,530 to 825,979 _03433 MPMX19_03434: MPMX19_03434 - hypothetical protein, at 826,007 to 827,350 _03434 Position (kb) 824 825 826Strain fitness (log2 ratio) -2 -1 0 1 2 3at 823.734 kb on + strand, within MPMX19_03430at 823.734 kb on + strand, within MPMX19_03430at 823.734 kb on + strand, within MPMX19_03430at 823.773 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.982 kb on + strand, within MPMX19_03431at 823.985 kb on + strand, within MPMX19_03431at 823.985 kb on + strand, within MPMX19_03431at 823.985 kb on + strand, within MPMX19_03431at 823.985 kb on + strand, within MPMX19_03431at 823.985 kb on + strand, within MPMX19_03431at 823.985 kb on + strand, within MPMX19_03431at 823.985 kb on + strand, within MPMX19_03431at 823.986 kb on - strand, within MPMX19_03431at 823.986 kb on - strand, within MPMX19_03431at 823.986 kb on - strand, within MPMX19_03431at 823.986 kb on - strand, within MPMX19_03431at 823.986 kb on - strand, within MPMX19_03431at 823.986 kb on - strand, within MPMX19_03431at 823.986 kb on - strand, within MPMX19_03431at 823.986 kb on - strand, within MPMX19_03431at 824.219 kb on + strand, within MPMX19_03431at 824.219 kb on + strand, within MPMX19_03431at 824.220 kb on - strand, within MPMX19_03431at 824.220 kb on - strand, within MPMX19_03431at 824.402 kb on + strand, within MPMX19_03431at 824.402 kb on + strand, within MPMX19_03431at 824.403 kb on - strand, within MPMX19_03431at 824.403 kb on - strand, within MPMX19_03431at 824.403 kb on - strand, within MPMX19_03431at 824.528 kb on + strandat 824.528 kb on + strandat 824.528 kb on + strandat 824.528 kb on + strandat 824.528 kb on + strandat 824.528 kb on + strandat 824.528 kb on + strandat 824.528 kb on + strandat 824.528 kb on + strandat 824.528 kb on + strandat 824.529 kb on - strandat 824.529 kb on - strandat 824.529 kb on - strandat 824.529 kb on - strandat 824.529 kb on - strandat 824.529 kb on - strandat 824.529 kb on - strandat 824.529 kb on - strandat 824.529 kb on - strandat 824.584 kb on - strandat 824.621 kb on + strandat 824.622 kb on - strandat 824.622 kb on - strandat 824.744 kb on + strandat 824.744 kb on + strandat 824.744 kb on + strandat 824.745 kb on - strandat 824.745 kb on - strandat 824.745 kb on - strandat 824.745 kb on - strandat 824.745 kb on - strandat 824.745 kb on - strandat 825.162 kb on + strand, within MPMX19_03432at 825.162 kb on + strand, within MPMX19_03432at 825.163 kb on - strand, within MPMX19_03432at 825.163 kb on - strand, within MPMX19_03432at 825.163 kb on - strand, within MPMX19_03432at 825.163 kb on - strand, within MPMX19_03432at 825.163 kb on - strand, within MPMX19_03432at 825.214 kb on + strand, within MPMX19_03432at 825.375 kb on + strand, within MPMX19_03432at 825.375 kb on + strand, within MPMX19_03432at 825.375 kb on + strand, within MPMX19_03432at 825.375 kb on + strand, within MPMX19_03432at 825.375 kb on + strand, within MPMX19_03432at 825.375 kb on + strand, within MPMX19_03432at 825.375 kb on + strand, within MPMX19_03432at 825.375 kb on + strand, within MPMX19_03432at 825.376 kb on - strand, within MPMX19_03432at 825.376 kb on - strand, within MPMX19_03432at 825.376 kb on - strand, within MPMX19_03432at 825.376 kb on - strand, within MPMX19_03432at 825.405 kb on + strand, within MPMX19_03432at 825.405 kb on + strand, within MPMX19_03432at 825.406 kb on - strand, within MPMX19_03432at 825.765 kb on - strand, within MPMX19_03433at 825.878 kb on + strand, within MPMX19_03433at 825.879 kb on - strand, within MPMX19_03433at 825.879 kb on - strand, within MPMX19_03433at 825.887 kb on + strand, within MPMX19_03433at 825.887 kb on + strand, within MPMX19_03433at 825.887 kb on + strand, within MPMX19_03433at 825.887 kb on + strand, within MPMX19_03433at 825.887 kb on + strand, within MPMX19_03433at 825.887 kb on + strand, within MPMX19_03433at 825.887 kb on + strand, within MPMX19_03433at 825.887 kb on + strand, within MPMX19_03433at 825.887 kb on + strand, within MPMX19_03433at 825.887 kb on + strand, within MPMX19_03433at 825.887 kb on + strand, within MPMX19_03433at 825.887 kb on + strand, within MPMX19_03433at 825.887 kb on + strand, within MPMX19_03433at 825.888 kb on - strand, within MPMX19_03433at 825.888 kb on - strand, within MPMX19_03433at 825.888 kb on - strand, within MPMX19_03433at 825.888 kb on - strand, within MPMX19_03433at 825.888 kb on - strand, within MPMX19_03433at 825.888 kb on - strand, within MPMX19_03433at 825.888 kb on - strand, within MPMX19_03433at 825.888 kb on - strand, within MPMX19_03433at 825.888 kb on - strand, within MPMX19_03433at 825.888 kb on - strand, within MPMX19_03433at 826.115 kb on + strandat 826.115 kb on + strandat 826.115 kb on + strandat 826.115 kb on + strandat 826.115 kb on + strandat 826.115 kb on + strandat 826.115 kb on + strandat 826.115 kb on + strandat 826.115 kb on + strandat 826.116 kb on - strandat 826.116 kb on - strandat 826.116 kb on - strandat 826.116 kb on - strandat 826.116 kb on - strandat 826.116 kb on - strandat 826.116 kb on - strandat 826.292 kb on + strand, within MPMX19_03434

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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823,734 + MPMX19_03430 0.69 -1.1
823,734 + MPMX19_03430 0.69 -0.9
823,734 + MPMX19_03430 0.69 -1.7
823,773 + MPMX19_03430 0.75 -0.3
823,812 + MPMX19_03430 0.81 -0.5
823,812 + MPMX19_03430 0.81 -0.3
823,812 + MPMX19_03430 0.81 -0.9
823,812 + MPMX19_03430 0.81 +2.7
823,812 + MPMX19_03430 0.81 +0.1
823,812 + MPMX19_03430 0.81 +1.3
823,812 + MPMX19_03430 0.81 -0.4
823,812 + MPMX19_03430 0.81 -0.9
823,812 + MPMX19_03430 0.81 -0.5
823,812 + MPMX19_03430 0.81 -0.4
823,812 + MPMX19_03430 0.81 -0.5
823,812 + MPMX19_03430 0.81 -1.6
823,812 + MPMX19_03430 0.81 +0.1
823,812 + MPMX19_03430 0.81 -0.4
823,813 - MPMX19_03430 0.82 -0.1
823,813 - MPMX19_03430 0.82 +0.9
823,813 - MPMX19_03430 0.82 -0.3
823,813 - MPMX19_03430 0.82 -1.1
823,813 - MPMX19_03430 0.82 -0.6
823,813 - MPMX19_03430 0.82 +0.1
823,813 - MPMX19_03430 0.82 +0.5
823,813 - MPMX19_03430 0.82 -1.1
823,813 - MPMX19_03430 0.82 -0.4
823,813 - MPMX19_03430 0.82 -0.9
823,813 - MPMX19_03430 0.82 +0.1
823,813 - MPMX19_03430 0.82 +0.9
823,813 - MPMX19_03430 0.82 +0.4
823,813 - MPMX19_03430 0.82 -0.3
823,813 - MPMX19_03430 0.82 -0.6
823,813 - MPMX19_03430 0.82 -1.3
823,813 - MPMX19_03430 0.82 -0.9
823,813 - MPMX19_03430 0.82 +1.7
823,813 - MPMX19_03430 0.82 +0.7
823,813 - MPMX19_03430 0.82 -0.5
823,982 + MPMX19_03431 0.11 +0.7
823,985 + MPMX19_03431 0.12 -0.9
823,985 + MPMX19_03431 0.12 -0.7
823,985 + MPMX19_03431 0.12 +0.3
823,985 + MPMX19_03431 0.12 -1.1
823,985 + MPMX19_03431 0.12 -0.5
823,985 + MPMX19_03431 0.12 -0.6
823,985 + MPMX19_03431 0.12 -1.7
823,986 - MPMX19_03431 0.12 -2.4
823,986 - MPMX19_03431 0.12 +0.3
823,986 - MPMX19_03431 0.12 -2.5
823,986 - MPMX19_03431 0.12 -0.6
823,986 - MPMX19_03431 0.12 -0.3
823,986 - MPMX19_03431 0.12 -0.6
823,986 - MPMX19_03431 0.12 -2.6
823,986 - MPMX19_03431 0.12 -0.3
824,219 + MPMX19_03431 0.54 -0.2
824,219 + MPMX19_03431 0.54 -1.6
824,220 - MPMX19_03431 0.54 -0.3
824,220 - MPMX19_03431 0.54 +0.7
824,402 + MPMX19_03431 0.87 -0.3
824,402 + MPMX19_03431 0.87 -0.3
824,403 - MPMX19_03431 0.87 +0.3
824,403 - MPMX19_03431 0.87 -2.5
824,403 - MPMX19_03431 0.87 -1.3
824,528 + -0.5
824,528 + +1.1
824,528 + -0.3
824,528 + +1.3
824,528 + +0.1
824,528 + +0.1
824,528 + -0.6
824,528 + -0.9
824,528 + +0.7
824,528 + -0.3
824,529 - -1.3
824,529 - +0.3
824,529 - -0.3
824,529 - +0.4
824,529 - -0.5
824,529 - -1.1
824,529 - -0.7
824,529 - -0.3
824,529 - -0.3
824,584 - -0.3
824,621 + +1.7
824,622 - -0.9
824,622 - -0.1
824,744 + -0.8
824,744 + +0.4
824,744 + -0.4
824,745 - -0.3
824,745 - -1.3
824,745 - -1.0
824,745 - -0.3
824,745 - -0.7
824,745 - -1.7
825,162 + MPMX19_03432 0.54 -0.4
825,162 + MPMX19_03432 0.54 +0.5
825,163 - MPMX19_03432 0.54 +2.9
825,163 - MPMX19_03432 0.54 -1.2
825,163 - MPMX19_03432 0.54 +0.1
825,163 - MPMX19_03432 0.54 +0.1
825,163 - MPMX19_03432 0.54 -0.5
825,214 + MPMX19_03432 0.60 -0.9
825,375 + MPMX19_03432 0.80 +0.1
825,375 + MPMX19_03432 0.80 +0.0
825,375 + MPMX19_03432 0.80 +1.2
825,375 + MPMX19_03432 0.80 +0.1
825,375 + MPMX19_03432 0.80 +1.7
825,375 + MPMX19_03432 0.80 -0.6
825,375 + MPMX19_03432 0.80 -0.1
825,375 + MPMX19_03432 0.80 -0.5
825,376 - MPMX19_03432 0.81 -1.1
825,376 - MPMX19_03432 0.81 +0.4
825,376 - MPMX19_03432 0.81 -2.5
825,376 - MPMX19_03432 0.81 -0.9
825,405 + MPMX19_03432 0.84 -0.1
825,405 + MPMX19_03432 0.84 -0.7
825,406 - MPMX19_03432 0.84 -1.4
825,765 - MPMX19_03433 0.52 -0.6
825,878 + MPMX19_03433 0.77 +0.1
825,879 - MPMX19_03433 0.78 -0.4
825,879 - MPMX19_03433 0.78 -0.6
825,887 + MPMX19_03433 0.79 +0.2
825,887 + MPMX19_03433 0.79 -1.1
825,887 + MPMX19_03433 0.79 +1.7
825,887 + MPMX19_03433 0.79 +2.1
825,887 + MPMX19_03433 0.79 +1.7
825,887 + MPMX19_03433 0.79 -0.7
825,887 + MPMX19_03433 0.79 +0.4
825,887 + MPMX19_03433 0.79 -0.8
825,887 + MPMX19_03433 0.79 -0.2
825,887 + MPMX19_03433 0.79 +1.0
825,887 + MPMX19_03433 0.79 +0.1
825,887 + MPMX19_03433 0.79 +0.2
825,887 + MPMX19_03433 0.79 +1.0
825,888 - MPMX19_03433 0.80 +2.1
825,888 - MPMX19_03433 0.80 -0.6
825,888 - MPMX19_03433 0.80 +0.3
825,888 - MPMX19_03433 0.80 -0.9
825,888 - MPMX19_03433 0.80 +0.9
825,888 - MPMX19_03433 0.80 -1.5
825,888 - MPMX19_03433 0.80 -1.6
825,888 - MPMX19_03433 0.80 -0.9
825,888 - MPMX19_03433 0.80 +0.1
825,888 - MPMX19_03433 0.80 +2.0
826,115 + -0.4
826,115 + -1.0
826,115 + -1.6
826,115 + -0.9
826,115 + +0.5
826,115 + +1.0
826,115 + -1.3
826,115 + -1.5
826,115 + -0.0
826,116 - +0.1
826,116 - -0.7
826,116 - -1.2
826,116 - -0.3
826,116 - -0.1
826,116 - -1.0
826,116 - +0.4
826,292 + MPMX19_03434 0.21 +0.1

Or see this region's nucleotide sequence