Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03221 and MPMX19_03222 overlap by 4 nucleotides MPMX19_03222 and MPMX19_03223 are separated by 226 nucleotides
MPMX19_03221: MPMX19_03221 - Adaptive-response sensory-kinase SasA, at 521,321 to 522,673
_03221
MPMX19_03222: MPMX19_03222 - Transcriptional regulatory protein OmpR, at 522,670 to 523,410
_03222
MPMX19_03223: MPMX19_03223 - hypothetical protein, at 523,637 to 524,407
_03223
Position (kb) 522
523
524 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 521.704 kb on - strand, within MPMX19_03221 at 521.704 kb on - strand, within MPMX19_03221 at 521.704 kb on - strand, within MPMX19_03221 at 521.784 kb on + strand, within MPMX19_03221 at 521.784 kb on + strand, within MPMX19_03221 at 521.784 kb on + strand, within MPMX19_03221 at 521.784 kb on + strand, within MPMX19_03221 at 521.784 kb on + strand, within MPMX19_03221 at 521.784 kb on + strand, within MPMX19_03221 at 521.784 kb on + strand, within MPMX19_03221 at 521.785 kb on - strand, within MPMX19_03221 at 521.785 kb on - strand, within MPMX19_03221 at 521.785 kb on - strand, within MPMX19_03221 at 521.785 kb on - strand, within MPMX19_03221 at 521.785 kb on - strand, within MPMX19_03221 at 521.785 kb on - strand, within MPMX19_03221 at 521.949 kb on + strand, within MPMX19_03221 at 521.949 kb on + strand, within MPMX19_03221 at 521.949 kb on + strand, within MPMX19_03221 at 521.949 kb on + strand, within MPMX19_03221 at 521.950 kb on - strand, within MPMX19_03221 at 521.950 kb on - strand, within MPMX19_03221 at 522.375 kb on + strand, within MPMX19_03221 at 522.375 kb on + strand, within MPMX19_03221 at 522.376 kb on - strand, within MPMX19_03221 at 522.381 kb on + strand, within MPMX19_03221 at 522.381 kb on + strand, within MPMX19_03221 at 522.381 kb on + strand, within MPMX19_03221 at 522.382 kb on - strand, within MPMX19_03221 at 522.382 kb on - strand, within MPMX19_03221 at 522.382 kb on - strand, within MPMX19_03221 at 522.382 kb on - strand, within MPMX19_03221 at 522.382 kb on - strand, within MPMX19_03221 at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 523.103 kb on + strand, within MPMX19_03222 at 523.104 kb on - strand, within MPMX19_03222 at 523.104 kb on - strand, within MPMX19_03222 at 523.341 kb on + strand at 523.344 kb on - strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.489 kb on + strand at 523.489 kb on + strand at 523.489 kb on + strand at 523.490 kb on - strand at 523.490 kb on - strand at 523.508 kb on + strand at 523.508 kb on + strand at 523.508 kb on + strand at 523.509 kb on - strand at 523.509 kb on - strand at 523.509 kb on - strand at 523.509 kb on - strand at 523.537 kb on + strand at 523.538 kb on - strand at 523.630 kb on + strand at 523.630 kb on + strand at 523.630 kb on + strand at 523.630 kb on + strand at 523.630 kb on + strand at 523.631 kb on - strand at 523.631 kb on - strand at 523.631 kb on - strand at 523.631 kb on - strand at 523.631 kb on - strand at 523.631 kb on - strand at 523.631 kb on - strand at 523.805 kb on + strand, within MPMX19_03223 at 523.805 kb on + strand, within MPMX19_03223 at 523.806 kb on - strand, within MPMX19_03223 at 523.916 kb on + strand, within MPMX19_03223 at 523.916 kb on + strand, within MPMX19_03223 at 523.916 kb on + strand, within MPMX19_03223 at 523.916 kb on + strand, within MPMX19_03223 at 523.916 kb on + strand, within MPMX19_03223 at 523.917 kb on - strand, within MPMX19_03223 at 523.917 kb on - strand, within MPMX19_03223 at 523.917 kb on - strand, within MPMX19_03223 at 523.917 kb on - strand, within MPMX19_03223 at 523.917 kb on - strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 524.081 kb on + strand, within MPMX19_03223 at 524.082 kb on - strand, within MPMX19_03223 at 524.082 kb on - strand, within MPMX19_03223 at 524.082 kb on - strand, within MPMX19_03223 at 524.082 kb on - strand, within MPMX19_03223 at 524.082 kb on - strand, within MPMX19_03223 at 524.082 kb on - strand, within MPMX19_03223 at 524.087 kb on + strand, within MPMX19_03223 at 524.087 kb on + strand, within MPMX19_03223 at 524.088 kb on - strand, within MPMX19_03223 at 524.088 kb on - strand, within MPMX19_03223 at 524.088 kb on - strand, within MPMX19_03223 at 524.088 kb on - strand, within MPMX19_03223 at 524.342 kb on + strand at 524.342 kb on + strand at 524.342 kb on + strand at 524.342 kb on + strand at 524.342 kb on + strand at 524.343 kb on - strand at 524.343 kb on - strand at 524.343 kb on - strand at 524.343 kb on - strand at 524.343 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 521,704 - MPMX19_03221 0.28 +0.3 521,704 - MPMX19_03221 0.28 -1.6 521,704 - MPMX19_03221 0.28 -1.8 521,784 + MPMX19_03221 0.34 -1.1 521,784 + MPMX19_03221 0.34 -0.2 521,784 + MPMX19_03221 0.34 +0.2 521,784 + MPMX19_03221 0.34 +0.2 521,784 + MPMX19_03221 0.34 +0.0 521,784 + MPMX19_03221 0.34 +0.2 521,784 + MPMX19_03221 0.34 -0.1 521,785 - MPMX19_03221 0.34 -1.3 521,785 - MPMX19_03221 0.34 +0.8 521,785 - MPMX19_03221 0.34 -0.6 521,785 - MPMX19_03221 0.34 -1.2 521,785 - MPMX19_03221 0.34 -0.6 521,785 - MPMX19_03221 0.34 +0.8 521,949 + MPMX19_03221 0.46 +1.3 521,949 + MPMX19_03221 0.46 -0.4 521,949 + MPMX19_03221 0.46 -0.2 521,949 + MPMX19_03221 0.46 +1.2 521,950 - MPMX19_03221 0.46 -0.2 521,950 - MPMX19_03221 0.46 +0.1 522,375 + MPMX19_03221 0.78 +0.5 522,375 + MPMX19_03221 0.78 -0.2 522,376 - MPMX19_03221 0.78 -0.7 522,381 + MPMX19_03221 0.78 -0.6 522,381 + MPMX19_03221 0.78 +0.5 522,381 + MPMX19_03221 0.78 -1.6 522,382 - MPMX19_03221 0.78 -0.2 522,382 - MPMX19_03221 0.78 -1.2 522,382 - MPMX19_03221 0.78 -0.2 522,382 - MPMX19_03221 0.78 -1.1 522,382 - MPMX19_03221 0.78 +0.1 522,713 + +0.2 522,713 + +0.1 522,713 + -1.2 522,713 + -0.2 522,713 + -0.2 522,713 + -2.0 522,713 + -0.6 522,713 + -0.6 522,713 + -0.2 522,713 + -0.8 522,713 + -1.1 522,713 + -1.6 522,713 + +1.0 522,713 + -1.1 522,714 - +0.2 522,714 - -0.9 522,714 - -0.2 522,714 - -2.1 522,714 - -1.9 522,714 - -0.2 522,714 - -0.1 522,714 - -0.2 522,714 - -0.2 522,714 - -0.6 523,103 + MPMX19_03222 0.58 +0.8 523,104 - MPMX19_03222 0.59 -0.2 523,104 - MPMX19_03222 0.59 -1.1 523,341 + -0.2 523,344 - +1.5 523,442 + -1.4 523,442 + -0.6 523,442 + -0.1 523,442 + +0.5 523,442 + +1.0 523,442 + +0.3 523,442 + -0.2 523,442 + -2.2 523,442 + -0.1 523,442 + +1.2 523,442 + +1.8 523,442 + -0.6 523,442 + +2.8 523,443 - +0.9 523,443 - -0.8 523,443 - -1.7 523,443 - -0.2 523,443 - +1.8 523,443 - -1.2 523,443 - +0.2 523,443 - -0.7 523,443 - -0.8 523,443 - -0.8 523,489 + -0.9 523,489 + +0.2 523,489 + -0.2 523,490 - +0.2 523,490 - -0.2 523,508 + +0.3 523,508 + -0.8 523,508 + +0.5 523,509 - -0.8 523,509 - +1.8 523,509 - -1.6 523,509 - -0.8 523,537 + +0.8 523,538 - -0.1 523,630 + -1.6 523,630 + -1.1 523,630 + -2.4 523,630 + -1.4 523,630 + +0.6 523,631 - +0.2 523,631 - -1.6 523,631 - -0.6 523,631 - -0.1 523,631 - +1.3 523,631 - -1.1 523,631 - +0.8 523,805 + MPMX19_03223 0.22 -0.6 523,805 + MPMX19_03223 0.22 -1.1 523,806 - MPMX19_03223 0.22 -0.9 523,916 + MPMX19_03223 0.36 +1.3 523,916 + MPMX19_03223 0.36 +0.3 523,916 + MPMX19_03223 0.36 +0.2 523,916 + MPMX19_03223 0.36 +0.2 523,916 + MPMX19_03223 0.36 -0.6 523,917 - MPMX19_03223 0.36 -1.6 523,917 - MPMX19_03223 0.36 +0.4 523,917 - MPMX19_03223 0.36 -0.4 523,917 - MPMX19_03223 0.36 +1.3 523,917 - MPMX19_03223 0.36 -1.2 523,973 + MPMX19_03223 0.44 -1.1 523,973 + MPMX19_03223 0.44 +1.8 523,973 + MPMX19_03223 0.44 -0.9 523,973 + MPMX19_03223 0.44 -0.2 523,973 + MPMX19_03223 0.44 -0.4 523,973 + MPMX19_03223 0.44 +1.0 523,973 + MPMX19_03223 0.44 -1.2 523,973 + MPMX19_03223 0.44 -1.9 523,973 + MPMX19_03223 0.44 -1.4 523,973 + MPMX19_03223 0.44 +0.4 523,973 + MPMX19_03223 0.44 -1.8 523,974 - MPMX19_03223 0.44 -0.5 523,974 - MPMX19_03223 0.44 +0.4 523,974 - MPMX19_03223 0.44 -1.0 523,974 - MPMX19_03223 0.44 +0.4 523,974 - MPMX19_03223 0.44 -1.2 523,974 - MPMX19_03223 0.44 -0.1 523,974 - MPMX19_03223 0.44 +0.2 523,974 - MPMX19_03223 0.44 -0.4 524,081 + MPMX19_03223 0.58 -1.0 524,082 - MPMX19_03223 0.58 -0.6 524,082 - MPMX19_03223 0.58 +0.0 524,082 - MPMX19_03223 0.58 +0.2 524,082 - MPMX19_03223 0.58 +0.8 524,082 - MPMX19_03223 0.58 -1.1 524,082 - MPMX19_03223 0.58 +2.2 524,087 + MPMX19_03223 0.58 -0.4 524,087 + MPMX19_03223 0.58 -0.7 524,088 - MPMX19_03223 0.58 -0.6 524,088 - MPMX19_03223 0.58 -0.7 524,088 - MPMX19_03223 0.58 +0.0 524,088 - MPMX19_03223 0.58 +2.5 524,342 + +1.2 524,342 + -1.6 524,342 + +0.5 524,342 + +2.3 524,342 + +0.2 524,343 - -0.8 524,343 - +0.2 524,343 - -1.7 524,343 - -0.1 524,343 - +0.4
Or see this region's nucleotide sequence