Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03122

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03121 and MPMX19_03122 are separated by 221 nucleotidesMPMX19_03122 and MPMX19_03123 are separated by 59 nucleotidesMPMX19_03123 and MPMX19_03124 overlap by 4 nucleotides MPMX19_03121: MPMX19_03121 - NADP-dependent malic enzyme, at 407,523 to 409,823 _03121 MPMX19_03122: MPMX19_03122 - [Citrate [pro-3S]-lyase] ligase, at 410,045 to 411,163 _03122 MPMX19_03123: MPMX19_03123 - Citrate lyase acyl carrier protein, at 411,223 to 411,519 _03123 MPMX19_03124: MPMX19_03124 - Citrate lyase subunit beta, at 411,516 to 412,388 _03124 Position (kb) 410 411 412Strain fitness (log2 ratio) -2 -1 0 1 2at 409.047 kb on + strand, within MPMX19_03121at 409.047 kb on + strand, within MPMX19_03121at 409.047 kb on + strand, within MPMX19_03121at 409.047 kb on + strand, within MPMX19_03121at 409.047 kb on + strand, within MPMX19_03121at 409.047 kb on + strand, within MPMX19_03121at 409.047 kb on + strand, within MPMX19_03121at 409.048 kb on - strand, within MPMX19_03121at 409.048 kb on - strand, within MPMX19_03121at 409.048 kb on - strand, within MPMX19_03121at 409.048 kb on - strand, within MPMX19_03121at 409.048 kb on - strand, within MPMX19_03121at 409.048 kb on - strand, within MPMX19_03121at 409.059 kb on + strand, within MPMX19_03121at 409.059 kb on + strand, within MPMX19_03121at 409.060 kb on - strand, within MPMX19_03121at 409.197 kb on + strand, within MPMX19_03121at 409.198 kb on - strand, within MPMX19_03121at 409.198 kb on - strand, within MPMX19_03121at 409.296 kb on + strand, within MPMX19_03121at 409.296 kb on + strand, within MPMX19_03121at 409.296 kb on + strand, within MPMX19_03121at 409.296 kb on + strand, within MPMX19_03121at 409.296 kb on + strand, within MPMX19_03121at 409.296 kb on + strand, within MPMX19_03121at 409.296 kb on + strand, within MPMX19_03121at 409.297 kb on - strand, within MPMX19_03121at 409.297 kb on - strand, within MPMX19_03121at 409.297 kb on - strand, within MPMX19_03121at 409.297 kb on - strand, within MPMX19_03121at 409.297 kb on - strand, within MPMX19_03121at 409.297 kb on - strand, within MPMX19_03121at 409.821 kb on + strandat 409.822 kb on - strandat 410.066 kb on + strandat 410.067 kb on - strandat 410.067 kb on - strandat 410.067 kb on - strandat 410.141 kb on + strandat 410.141 kb on + strandat 410.141 kb on + strandat 410.142 kb on - strandat 410.303 kb on + strand, within MPMX19_03122at 410.303 kb on + strand, within MPMX19_03122at 410.304 kb on - strand, within MPMX19_03122at 410.304 kb on - strand, within MPMX19_03122at 410.333 kb on + strand, within MPMX19_03122at 410.333 kb on + strand, within MPMX19_03122at 410.333 kb on + strand, within MPMX19_03122at 410.334 kb on - strand, within MPMX19_03122at 410.334 kb on - strand, within MPMX19_03122at 410.334 kb on - strand, within MPMX19_03122at 410.378 kb on + strand, within MPMX19_03122at 410.378 kb on + strand, within MPMX19_03122at 410.378 kb on + strand, within MPMX19_03122at 410.378 kb on + strand, within MPMX19_03122at 410.378 kb on + strand, within MPMX19_03122at 410.378 kb on + strand, within MPMX19_03122at 410.378 kb on + strand, within MPMX19_03122at 410.378 kb on + strand, within MPMX19_03122at 410.378 kb on + strand, within MPMX19_03122at 410.378 kb on + strand, within MPMX19_03122at 410.378 kb on + strand, within MPMX19_03122at 410.379 kb on - strand, within MPMX19_03122at 410.379 kb on - strand, within MPMX19_03122at 410.379 kb on - strand, within MPMX19_03122at 410.379 kb on - strand, within MPMX19_03122at 410.379 kb on - strand, within MPMX19_03122at 410.379 kb on - strand, within MPMX19_03122at 410.402 kb on + strand, within MPMX19_03122at 410.403 kb on - strand, within MPMX19_03122at 410.444 kb on + strand, within MPMX19_03122at 410.444 kb on + strand, within MPMX19_03122at 410.444 kb on + strand, within MPMX19_03122at 410.445 kb on - strand, within MPMX19_03122at 410.547 kb on - strand, within MPMX19_03122at 410.547 kb on - strand, within MPMX19_03122at 410.547 kb on - strand, within MPMX19_03122at 410.547 kb on - strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.699 kb on + strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.700 kb on - strand, within MPMX19_03122at 410.729 kb on + strand, within MPMX19_03122at 410.729 kb on + strand, within MPMX19_03122at 410.730 kb on - strand, within MPMX19_03122at 410.730 kb on - strand, within MPMX19_03122at 410.730 kb on - strand, within MPMX19_03122at 410.870 kb on + strand, within MPMX19_03122at 410.870 kb on + strand, within MPMX19_03122at 410.871 kb on - strand, within MPMX19_03122at 410.871 kb on - strand, within MPMX19_03122at 411.068 kb on + strandat 411.068 kb on + strandat 411.068 kb on + strandat 411.068 kb on + strandat 411.068 kb on + strandat 411.068 kb on + strandat 411.068 kb on + strandat 411.068 kb on + strandat 411.068 kb on + strandat 411.068 kb on + strandat 411.069 kb on - strandat 411.069 kb on - strandat 411.069 kb on - strandat 411.069 kb on - strandat 411.069 kb on - strandat 411.284 kb on + strand, within MPMX19_03123at 411.284 kb on + strand, within MPMX19_03123at 411.284 kb on + strand, within MPMX19_03123at 411.285 kb on - strand, within MPMX19_03123at 411.285 kb on - strand, within MPMX19_03123at 411.585 kb on + strandat 411.585 kb on + strandat 411.585 kb on + strandat 411.585 kb on + strandat 411.585 kb on + strandat 411.585 kb on + strandat 411.585 kb on + strandat 411.586 kb on - strandat 411.586 kb on - strandat 411.586 kb on - strandat 411.586 kb on - strandat 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.984 kb on + strand, within MPMX19_03124at 411.985 kb on - strand, within MPMX19_03124at 411.985 kb on - strand, within MPMX19_03124at 411.985 kb on - strand, within MPMX19_03124at 411.985 kb on - strand, within MPMX19_03124at 411.985 kb on - strand, within MPMX19_03124at 411.985 kb on - strand, within MPMX19_03124at 411.985 kb on - strand, within MPMX19_03124at 412.032 kb on + strand, within MPMX19_03124at 412.032 kb on + strand, within MPMX19_03124at 412.032 kb on + strand, within MPMX19_03124at 412.032 kb on + strand, within MPMX19_03124at 412.032 kb on + strand, within MPMX19_03124at 412.033 kb on - strand, within MPMX19_03124at 412.033 kb on - strand, within MPMX19_03124at 412.033 kb on - strand, within MPMX19_03124at 412.033 kb on - strand, within MPMX19_03124at 412.033 kb on - strand, within MPMX19_03124

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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409,047 + MPMX19_03121 0.66 -2.5
409,047 + MPMX19_03121 0.66 -1.0
409,047 + MPMX19_03121 0.66 +0.1
409,047 + MPMX19_03121 0.66 -0.3
409,047 + MPMX19_03121 0.66 -0.4
409,047 + MPMX19_03121 0.66 +0.1
409,047 + MPMX19_03121 0.66 -0.0
409,048 - MPMX19_03121 0.66 -0.3
409,048 - MPMX19_03121 0.66 -0.9
409,048 - MPMX19_03121 0.66 -1.8
409,048 - MPMX19_03121 0.66 -1.8
409,048 - MPMX19_03121 0.66 -1.5
409,048 - MPMX19_03121 0.66 -0.2
409,059 + MPMX19_03121 0.67 -2.1
409,059 + MPMX19_03121 0.67 -0.1
409,060 - MPMX19_03121 0.67 -0.3
409,197 + MPMX19_03121 0.73 -1.8
409,198 - MPMX19_03121 0.73 -2.7
409,198 - MPMX19_03121 0.73 -1.1
409,296 + MPMX19_03121 0.77 +1.3
409,296 + MPMX19_03121 0.77 +0.7
409,296 + MPMX19_03121 0.77 +2.1
409,296 + MPMX19_03121 0.77 -1.5
409,296 + MPMX19_03121 0.77 +1.7
409,296 + MPMX19_03121 0.77 +0.1
409,296 + MPMX19_03121 0.77 -1.3
409,297 - MPMX19_03121 0.77 -0.4
409,297 - MPMX19_03121 0.77 -0.5
409,297 - MPMX19_03121 0.77 -0.2
409,297 - MPMX19_03121 0.77 -0.9
409,297 - MPMX19_03121 0.77 +0.0
409,297 - MPMX19_03121 0.77 -1.3
409,821 + -1.5
409,822 - -2.0
410,066 + +1.7
410,067 - -1.6
410,067 - +0.7
410,067 - -1.8
410,141 + -0.9
410,141 + -0.0
410,141 + +0.1
410,142 - -0.5
410,303 + MPMX19_03122 0.23 -0.3
410,303 + MPMX19_03122 0.23 -0.3
410,304 - MPMX19_03122 0.23 +1.1
410,304 - MPMX19_03122 0.23 +1.0
410,333 + MPMX19_03122 0.26 -0.9
410,333 + MPMX19_03122 0.26 -1.1
410,333 + MPMX19_03122 0.26 -1.3
410,334 - MPMX19_03122 0.26 -1.1
410,334 - MPMX19_03122 0.26 -0.3
410,334 - MPMX19_03122 0.26 +1.1
410,378 + MPMX19_03122 0.30 +0.3
410,378 + MPMX19_03122 0.30 -0.8
410,378 + MPMX19_03122 0.30 -0.9
410,378 + MPMX19_03122 0.30 +0.4
410,378 + MPMX19_03122 0.30 -0.6
410,378 + MPMX19_03122 0.30 +0.2
410,378 + MPMX19_03122 0.30 -1.3
410,378 + MPMX19_03122 0.30 -1.3
410,378 + MPMX19_03122 0.30 +1.1
410,378 + MPMX19_03122 0.30 -0.8
410,378 + MPMX19_03122 0.30 -0.6
410,379 - MPMX19_03122 0.30 -1.2
410,379 - MPMX19_03122 0.30 +0.2
410,379 - MPMX19_03122 0.30 -0.6
410,379 - MPMX19_03122 0.30 -1.0
410,379 - MPMX19_03122 0.30 +1.1
410,379 - MPMX19_03122 0.30 -1.2
410,402 + MPMX19_03122 0.32 -1.3
410,403 - MPMX19_03122 0.32 -2.1
410,444 + MPMX19_03122 0.36 -0.9
410,444 + MPMX19_03122 0.36 -1.8
410,444 + MPMX19_03122 0.36 -1.6
410,445 - MPMX19_03122 0.36 -0.3
410,547 - MPMX19_03122 0.45 +0.4
410,547 - MPMX19_03122 0.45 -1.1
410,547 - MPMX19_03122 0.45 +0.4
410,547 - MPMX19_03122 0.45 -0.6
410,699 + MPMX19_03122 0.58 +1.1
410,699 + MPMX19_03122 0.58 -0.9
410,699 + MPMX19_03122 0.58 -0.3
410,699 + MPMX19_03122 0.58 -0.3
410,699 + MPMX19_03122 0.58 -0.3
410,699 + MPMX19_03122 0.58 -1.8
410,699 + MPMX19_03122 0.58 -0.5
410,699 + MPMX19_03122 0.58 -0.6
410,699 + MPMX19_03122 0.58 +0.5
410,699 + MPMX19_03122 0.58 +0.7
410,699 + MPMX19_03122 0.58 -1.9
410,699 + MPMX19_03122 0.58 -1.6
410,699 + MPMX19_03122 0.58 -1.8
410,699 + MPMX19_03122 0.58 +0.1
410,699 + MPMX19_03122 0.58 -0.5
410,699 + MPMX19_03122 0.58 -0.6
410,699 + MPMX19_03122 0.58 +0.1
410,699 + MPMX19_03122 0.58 -0.9
410,699 + MPMX19_03122 0.58 +0.1
410,699 + MPMX19_03122 0.58 +0.4
410,699 + MPMX19_03122 0.58 -1.9
410,699 + MPMX19_03122 0.58 -2.2
410,699 + MPMX19_03122 0.58 -0.6
410,699 + MPMX19_03122 0.58 -0.9
410,699 + MPMX19_03122 0.58 +0.4
410,700 - MPMX19_03122 0.59 -1.1
410,700 - MPMX19_03122 0.59 -2.0
410,700 - MPMX19_03122 0.59 -1.1
410,700 - MPMX19_03122 0.59 -1.0
410,700 - MPMX19_03122 0.59 -0.1
410,700 - MPMX19_03122 0.59 -0.8
410,700 - MPMX19_03122 0.59 +0.4
410,700 - MPMX19_03122 0.59 +0.1
410,700 - MPMX19_03122 0.59 +1.0
410,700 - MPMX19_03122 0.59 -0.6
410,700 - MPMX19_03122 0.59 +0.4
410,700 - MPMX19_03122 0.59 -0.3
410,700 - MPMX19_03122 0.59 -1.1
410,700 - MPMX19_03122 0.59 -1.3
410,700 - MPMX19_03122 0.59 -1.6
410,700 - MPMX19_03122 0.59 -0.5
410,700 - MPMX19_03122 0.59 +0.1
410,700 - MPMX19_03122 0.59 -0.6
410,700 - MPMX19_03122 0.59 -0.6
410,700 - MPMX19_03122 0.59 -1.3
410,700 - MPMX19_03122 0.59 +0.1
410,700 - MPMX19_03122 0.59 -2.0
410,700 - MPMX19_03122 0.59 +0.1
410,729 + MPMX19_03122 0.61 +1.4
410,729 + MPMX19_03122 0.61 +0.7
410,730 - MPMX19_03122 0.61 -0.6
410,730 - MPMX19_03122 0.61 -0.3
410,730 - MPMX19_03122 0.61 -1.8
410,870 + MPMX19_03122 0.74 -1.6
410,870 + MPMX19_03122 0.74 -0.3
410,871 - MPMX19_03122 0.74 +0.1
410,871 - MPMX19_03122 0.74 -2.0
411,068 + +0.4
411,068 + +2.3
411,068 + +0.7
411,068 + +0.7
411,068 + -0.0
411,068 + +0.4
411,068 + +1.5
411,068 + -0.6
411,068 + +1.3
411,068 + +0.1
411,069 - +0.4
411,069 - -0.8
411,069 - -0.3
411,069 - +0.2
411,069 - -0.3
411,284 + MPMX19_03123 0.21 -0.2
411,284 + MPMX19_03123 0.21 +0.2
411,284 + MPMX19_03123 0.21 -0.6
411,285 - MPMX19_03123 0.21 -2.0
411,285 - MPMX19_03123 0.21 -1.8
411,585 + -1.1
411,585 + -0.3
411,585 + +0.7
411,585 + -0.6
411,585 + -0.6
411,585 + -0.3
411,585 + -1.2
411,586 - -0.6
411,586 - +0.7
411,586 - +0.2
411,586 - -0.1
411,984 + MPMX19_03124 0.54 +0.5
411,984 + MPMX19_03124 0.54 -0.3
411,984 + MPMX19_03124 0.54 -1.6
411,984 + MPMX19_03124 0.54 +0.4
411,984 + MPMX19_03124 0.54 +0.0
411,984 + MPMX19_03124 0.54 -0.6
411,984 + MPMX19_03124 0.54 +0.4
411,984 + MPMX19_03124 0.54 +0.8
411,984 + MPMX19_03124 0.54 -1.2
411,984 + MPMX19_03124 0.54 +0.1
411,985 - MPMX19_03124 0.54 +1.0
411,985 - MPMX19_03124 0.54 +1.3
411,985 - MPMX19_03124 0.54 -1.4
411,985 - MPMX19_03124 0.54 -2.2
411,985 - MPMX19_03124 0.54 -0.5
411,985 - MPMX19_03124 0.54 +0.1
411,985 - MPMX19_03124 0.54 +0.9
412,032 + MPMX19_03124 0.59 +0.1
412,032 + MPMX19_03124 0.59 -0.1
412,032 + MPMX19_03124 0.59 +1.1
412,032 + MPMX19_03124 0.59 +1.1
412,032 + MPMX19_03124 0.59 -0.4
412,033 - MPMX19_03124 0.59 -0.6
412,033 - MPMX19_03124 0.59 +0.5
412,033 - MPMX19_03124 0.59 -1.5
412,033 - MPMX19_03124 0.59 -1.1
412,033 - MPMX19_03124 0.59 +0.1

Or see this region's nucleotide sequence