Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03121 and MPMX19_03122 are separated by 221 nucleotides MPMX19_03122 and MPMX19_03123 are separated by 59 nucleotides MPMX19_03123 and MPMX19_03124 overlap by 4 nucleotides
MPMX19_03121: MPMX19_03121 - NADP-dependent malic enzyme, at 407,523 to 409,823
_03121
MPMX19_03122: MPMX19_03122 - [Citrate [pro-3S]-lyase] ligase, at 410,045 to 411,163
_03122
MPMX19_03123: MPMX19_03123 - Citrate lyase acyl carrier protein, at 411,223 to 411,519
_03123
MPMX19_03124: MPMX19_03124 - Citrate lyase subunit beta, at 411,516 to 412,388
_03124
Position (kb)
410
411
412 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 409.047 kb on + strand, within MPMX19_03121 at 409.047 kb on + strand, within MPMX19_03121 at 409.047 kb on + strand, within MPMX19_03121 at 409.047 kb on + strand, within MPMX19_03121 at 409.047 kb on + strand, within MPMX19_03121 at 409.047 kb on + strand, within MPMX19_03121 at 409.047 kb on + strand, within MPMX19_03121 at 409.048 kb on - strand, within MPMX19_03121 at 409.048 kb on - strand, within MPMX19_03121 at 409.048 kb on - strand, within MPMX19_03121 at 409.048 kb on - strand, within MPMX19_03121 at 409.048 kb on - strand, within MPMX19_03121 at 409.048 kb on - strand, within MPMX19_03121 at 409.059 kb on + strand, within MPMX19_03121 at 409.059 kb on + strand, within MPMX19_03121 at 409.060 kb on - strand, within MPMX19_03121 at 409.197 kb on + strand, within MPMX19_03121 at 409.198 kb on - strand, within MPMX19_03121 at 409.198 kb on - strand, within MPMX19_03121 at 409.296 kb on + strand, within MPMX19_03121 at 409.296 kb on + strand, within MPMX19_03121 at 409.296 kb on + strand, within MPMX19_03121 at 409.296 kb on + strand, within MPMX19_03121 at 409.296 kb on + strand, within MPMX19_03121 at 409.296 kb on + strand, within MPMX19_03121 at 409.296 kb on + strand, within MPMX19_03121 at 409.297 kb on - strand, within MPMX19_03121 at 409.297 kb on - strand, within MPMX19_03121 at 409.297 kb on - strand, within MPMX19_03121 at 409.297 kb on - strand, within MPMX19_03121 at 409.297 kb on - strand, within MPMX19_03121 at 409.297 kb on - strand, within MPMX19_03121 at 409.821 kb on + strand at 409.822 kb on - strand at 410.066 kb on + strand at 410.067 kb on - strand at 410.067 kb on - strand at 410.067 kb on - strand at 410.141 kb on + strand at 410.141 kb on + strand at 410.141 kb on + strand at 410.142 kb on - strand at 410.303 kb on + strand, within MPMX19_03122 at 410.303 kb on + strand, within MPMX19_03122 at 410.304 kb on - strand, within MPMX19_03122 at 410.304 kb on - strand, within MPMX19_03122 at 410.333 kb on + strand, within MPMX19_03122 at 410.333 kb on + strand, within MPMX19_03122 at 410.333 kb on + strand, within MPMX19_03122 at 410.334 kb on - strand, within MPMX19_03122 at 410.334 kb on - strand, within MPMX19_03122 at 410.334 kb on - strand, within MPMX19_03122 at 410.378 kb on + strand, within MPMX19_03122 at 410.378 kb on + strand, within MPMX19_03122 at 410.378 kb on + strand, within MPMX19_03122 at 410.378 kb on + strand, within MPMX19_03122 at 410.378 kb on + strand, within MPMX19_03122 at 410.378 kb on + strand, within MPMX19_03122 at 410.378 kb on + strand, within MPMX19_03122 at 410.378 kb on + strand, within MPMX19_03122 at 410.378 kb on + strand, within MPMX19_03122 at 410.378 kb on + strand, within MPMX19_03122 at 410.378 kb on + strand, within MPMX19_03122 at 410.379 kb on - strand, within MPMX19_03122 at 410.379 kb on - strand, within MPMX19_03122 at 410.379 kb on - strand, within MPMX19_03122 at 410.379 kb on - strand, within MPMX19_03122 at 410.379 kb on - strand, within MPMX19_03122 at 410.379 kb on - strand, within MPMX19_03122 at 410.402 kb on + strand, within MPMX19_03122 at 410.403 kb on - strand, within MPMX19_03122 at 410.444 kb on + strand, within MPMX19_03122 at 410.444 kb on + strand, within MPMX19_03122 at 410.444 kb on + strand, within MPMX19_03122 at 410.445 kb on - strand, within MPMX19_03122 at 410.547 kb on - strand, within MPMX19_03122 at 410.547 kb on - strand, within MPMX19_03122 at 410.547 kb on - strand, within MPMX19_03122 at 410.547 kb on - strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.699 kb on + strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.700 kb on - strand, within MPMX19_03122 at 410.729 kb on + strand, within MPMX19_03122 at 410.729 kb on + strand, within MPMX19_03122 at 410.730 kb on - strand, within MPMX19_03122 at 410.730 kb on - strand, within MPMX19_03122 at 410.730 kb on - strand, within MPMX19_03122 at 410.870 kb on + strand, within MPMX19_03122 at 410.870 kb on + strand, within MPMX19_03122 at 410.871 kb on - strand, within MPMX19_03122 at 410.871 kb on - strand, within MPMX19_03122 at 411.068 kb on + strand at 411.068 kb on + strand at 411.068 kb on + strand at 411.068 kb on + strand at 411.068 kb on + strand at 411.068 kb on + strand at 411.068 kb on + strand at 411.068 kb on + strand at 411.068 kb on + strand at 411.068 kb on + strand at 411.069 kb on - strand at 411.069 kb on - strand at 411.069 kb on - strand at 411.069 kb on - strand at 411.069 kb on - strand at 411.284 kb on + strand, within MPMX19_03123 at 411.284 kb on + strand, within MPMX19_03123 at 411.284 kb on + strand, within MPMX19_03123 at 411.285 kb on - strand, within MPMX19_03123 at 411.285 kb on - strand, within MPMX19_03123 at 411.585 kb on + strand at 411.585 kb on + strand at 411.585 kb on + strand at 411.585 kb on + strand at 411.585 kb on + strand at 411.585 kb on + strand at 411.585 kb on + strand at 411.586 kb on - strand at 411.586 kb on - strand at 411.586 kb on - strand at 411.586 kb on - strand at 411.984 kb on + strand, within MPMX19_03124 at 411.984 kb on + strand, within MPMX19_03124 at 411.984 kb on + strand, within MPMX19_03124 at 411.984 kb on + strand, within MPMX19_03124 at 411.984 kb on + strand, within MPMX19_03124 at 411.984 kb on + strand, within MPMX19_03124 at 411.984 kb on + strand, within MPMX19_03124 at 411.984 kb on + strand, within MPMX19_03124 at 411.984 kb on + strand, within MPMX19_03124 at 411.984 kb on + strand, within MPMX19_03124 at 411.985 kb on - strand, within MPMX19_03124 at 411.985 kb on - strand, within MPMX19_03124 at 411.985 kb on - strand, within MPMX19_03124 at 411.985 kb on - strand, within MPMX19_03124 at 411.985 kb on - strand, within MPMX19_03124 at 411.985 kb on - strand, within MPMX19_03124 at 411.985 kb on - strand, within MPMX19_03124 at 412.032 kb on + strand, within MPMX19_03124 at 412.032 kb on + strand, within MPMX19_03124 at 412.032 kb on + strand, within MPMX19_03124 at 412.032 kb on + strand, within MPMX19_03124 at 412.032 kb on + strand, within MPMX19_03124 at 412.033 kb on - strand, within MPMX19_03124 at 412.033 kb on - strand, within MPMX19_03124 at 412.033 kb on - strand, within MPMX19_03124 at 412.033 kb on - strand, within MPMX19_03124 at 412.033 kb on - strand, within MPMX19_03124
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 409,047 + MPMX19_03121 0.66 -2.5 409,047 + MPMX19_03121 0.66 -1.0 409,047 + MPMX19_03121 0.66 +0.1 409,047 + MPMX19_03121 0.66 -0.3 409,047 + MPMX19_03121 0.66 -0.4 409,047 + MPMX19_03121 0.66 +0.1 409,047 + MPMX19_03121 0.66 -0.0 409,048 - MPMX19_03121 0.66 -0.3 409,048 - MPMX19_03121 0.66 -0.9 409,048 - MPMX19_03121 0.66 -1.8 409,048 - MPMX19_03121 0.66 -1.8 409,048 - MPMX19_03121 0.66 -1.5 409,048 - MPMX19_03121 0.66 -0.2 409,059 + MPMX19_03121 0.67 -2.1 409,059 + MPMX19_03121 0.67 -0.1 409,060 - MPMX19_03121 0.67 -0.3 409,197 + MPMX19_03121 0.73 -1.8 409,198 - MPMX19_03121 0.73 -2.7 409,198 - MPMX19_03121 0.73 -1.1 409,296 + MPMX19_03121 0.77 +1.3 409,296 + MPMX19_03121 0.77 +0.7 409,296 + MPMX19_03121 0.77 +2.1 409,296 + MPMX19_03121 0.77 -1.5 409,296 + MPMX19_03121 0.77 +1.7 409,296 + MPMX19_03121 0.77 +0.1 409,296 + MPMX19_03121 0.77 -1.3 409,297 - MPMX19_03121 0.77 -0.4 409,297 - MPMX19_03121 0.77 -0.5 409,297 - MPMX19_03121 0.77 -0.2 409,297 - MPMX19_03121 0.77 -0.9 409,297 - MPMX19_03121 0.77 +0.0 409,297 - MPMX19_03121 0.77 -1.3 409,821 + -1.5 409,822 - -2.0 410,066 + +1.7 410,067 - -1.6 410,067 - +0.7 410,067 - -1.8 410,141 + -0.9 410,141 + -0.0 410,141 + +0.1 410,142 - -0.5 410,303 + MPMX19_03122 0.23 -0.3 410,303 + MPMX19_03122 0.23 -0.3 410,304 - MPMX19_03122 0.23 +1.1 410,304 - MPMX19_03122 0.23 +1.0 410,333 + MPMX19_03122 0.26 -0.9 410,333 + MPMX19_03122 0.26 -1.1 410,333 + MPMX19_03122 0.26 -1.3 410,334 - MPMX19_03122 0.26 -1.1 410,334 - MPMX19_03122 0.26 -0.3 410,334 - MPMX19_03122 0.26 +1.1 410,378 + MPMX19_03122 0.30 +0.3 410,378 + MPMX19_03122 0.30 -0.8 410,378 + MPMX19_03122 0.30 -0.9 410,378 + MPMX19_03122 0.30 +0.4 410,378 + MPMX19_03122 0.30 -0.6 410,378 + MPMX19_03122 0.30 +0.2 410,378 + MPMX19_03122 0.30 -1.3 410,378 + MPMX19_03122 0.30 -1.3 410,378 + MPMX19_03122 0.30 +1.1 410,378 + MPMX19_03122 0.30 -0.8 410,378 + MPMX19_03122 0.30 -0.6 410,379 - MPMX19_03122 0.30 -1.2 410,379 - MPMX19_03122 0.30 +0.2 410,379 - MPMX19_03122 0.30 -0.6 410,379 - MPMX19_03122 0.30 -1.0 410,379 - MPMX19_03122 0.30 +1.1 410,379 - MPMX19_03122 0.30 -1.2 410,402 + MPMX19_03122 0.32 -1.3 410,403 - MPMX19_03122 0.32 -2.1 410,444 + MPMX19_03122 0.36 -0.9 410,444 + MPMX19_03122 0.36 -1.8 410,444 + MPMX19_03122 0.36 -1.6 410,445 - MPMX19_03122 0.36 -0.3 410,547 - MPMX19_03122 0.45 +0.4 410,547 - MPMX19_03122 0.45 -1.1 410,547 - MPMX19_03122 0.45 +0.4 410,547 - MPMX19_03122 0.45 -0.6 410,699 + MPMX19_03122 0.58 +1.1 410,699 + MPMX19_03122 0.58 -0.9 410,699 + MPMX19_03122 0.58 -0.3 410,699 + MPMX19_03122 0.58 -0.3 410,699 + MPMX19_03122 0.58 -0.3 410,699 + MPMX19_03122 0.58 -1.8 410,699 + MPMX19_03122 0.58 -0.5 410,699 + MPMX19_03122 0.58 -0.6 410,699 + MPMX19_03122 0.58 +0.5 410,699 + MPMX19_03122 0.58 +0.7 410,699 + MPMX19_03122 0.58 -1.9 410,699 + MPMX19_03122 0.58 -1.6 410,699 + MPMX19_03122 0.58 -1.8 410,699 + MPMX19_03122 0.58 +0.1 410,699 + MPMX19_03122 0.58 -0.5 410,699 + MPMX19_03122 0.58 -0.6 410,699 + MPMX19_03122 0.58 +0.1 410,699 + MPMX19_03122 0.58 -0.9 410,699 + MPMX19_03122 0.58 +0.1 410,699 + MPMX19_03122 0.58 +0.4 410,699 + MPMX19_03122 0.58 -1.9 410,699 + MPMX19_03122 0.58 -2.2 410,699 + MPMX19_03122 0.58 -0.6 410,699 + MPMX19_03122 0.58 -0.9 410,699 + MPMX19_03122 0.58 +0.4 410,700 - MPMX19_03122 0.59 -1.1 410,700 - MPMX19_03122 0.59 -2.0 410,700 - MPMX19_03122 0.59 -1.1 410,700 - MPMX19_03122 0.59 -1.0 410,700 - MPMX19_03122 0.59 -0.1 410,700 - MPMX19_03122 0.59 -0.8 410,700 - MPMX19_03122 0.59 +0.4 410,700 - MPMX19_03122 0.59 +0.1 410,700 - MPMX19_03122 0.59 +1.0 410,700 - MPMX19_03122 0.59 -0.6 410,700 - MPMX19_03122 0.59 +0.4 410,700 - MPMX19_03122 0.59 -0.3 410,700 - MPMX19_03122 0.59 -1.1 410,700 - MPMX19_03122 0.59 -1.3 410,700 - MPMX19_03122 0.59 -1.6 410,700 - MPMX19_03122 0.59 -0.5 410,700 - MPMX19_03122 0.59 +0.1 410,700 - MPMX19_03122 0.59 -0.6 410,700 - MPMX19_03122 0.59 -0.6 410,700 - MPMX19_03122 0.59 -1.3 410,700 - MPMX19_03122 0.59 +0.1 410,700 - MPMX19_03122 0.59 -2.0 410,700 - MPMX19_03122 0.59 +0.1 410,729 + MPMX19_03122 0.61 +1.4 410,729 + MPMX19_03122 0.61 +0.7 410,730 - MPMX19_03122 0.61 -0.6 410,730 - MPMX19_03122 0.61 -0.3 410,730 - MPMX19_03122 0.61 -1.8 410,870 + MPMX19_03122 0.74 -1.6 410,870 + MPMX19_03122 0.74 -0.3 410,871 - MPMX19_03122 0.74 +0.1 410,871 - MPMX19_03122 0.74 -2.0 411,068 + +0.4 411,068 + +2.3 411,068 + +0.7 411,068 + +0.7 411,068 + -0.0 411,068 + +0.4 411,068 + +1.5 411,068 + -0.6 411,068 + +1.3 411,068 + +0.1 411,069 - +0.4 411,069 - -0.8 411,069 - -0.3 411,069 - +0.2 411,069 - -0.3 411,284 + MPMX19_03123 0.21 -0.2 411,284 + MPMX19_03123 0.21 +0.2 411,284 + MPMX19_03123 0.21 -0.6 411,285 - MPMX19_03123 0.21 -2.0 411,285 - MPMX19_03123 0.21 -1.8 411,585 + -1.1 411,585 + -0.3 411,585 + +0.7 411,585 + -0.6 411,585 + -0.6 411,585 + -0.3 411,585 + -1.2 411,586 - -0.6 411,586 - +0.7 411,586 - +0.2 411,586 - -0.1 411,984 + MPMX19_03124 0.54 +0.5 411,984 + MPMX19_03124 0.54 -0.3 411,984 + MPMX19_03124 0.54 -1.6 411,984 + MPMX19_03124 0.54 +0.4 411,984 + MPMX19_03124 0.54 +0.0 411,984 + MPMX19_03124 0.54 -0.6 411,984 + MPMX19_03124 0.54 +0.4 411,984 + MPMX19_03124 0.54 +0.8 411,984 + MPMX19_03124 0.54 -1.2 411,984 + MPMX19_03124 0.54 +0.1 411,985 - MPMX19_03124 0.54 +1.0 411,985 - MPMX19_03124 0.54 +1.3 411,985 - MPMX19_03124 0.54 -1.4 411,985 - MPMX19_03124 0.54 -2.2 411,985 - MPMX19_03124 0.54 -0.5 411,985 - MPMX19_03124 0.54 +0.1 411,985 - MPMX19_03124 0.54 +0.9 412,032 + MPMX19_03124 0.59 +0.1 412,032 + MPMX19_03124 0.59 -0.1 412,032 + MPMX19_03124 0.59 +1.1 412,032 + MPMX19_03124 0.59 +1.1 412,032 + MPMX19_03124 0.59 -0.4 412,033 - MPMX19_03124 0.59 -0.6 412,033 - MPMX19_03124 0.59 +0.5 412,033 - MPMX19_03124 0.59 -1.5 412,033 - MPMX19_03124 0.59 -1.1 412,033 - MPMX19_03124 0.59 +0.1
Or see this region's nucleotide sequence