Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03112

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03111 and MPMX19_03112 are separated by 39 nucleotidesMPMX19_03112 and MPMX19_03113 are separated by 5 nucleotidesMPMX19_03113 and MPMX19_03114 overlap by 4 nucleotides MPMX19_03111: MPMX19_03111 - Putative fatty-acid--CoA ligase FadD21, at 395,978 to 397,651 _03111 MPMX19_03112: MPMX19_03112 - Ribonuclease BN, at 397,691 to 398,431 _03112 MPMX19_03113: MPMX19_03113 - hypothetical protein, at 398,437 to 399,270 _03113 MPMX19_03114: MPMX19_03114 - hypothetical protein, at 399,267 to 400,196 _03114 Position (kb) 397 398 399Strain fitness (log2 ratio) -2 -1 0 1at 396.836 kb on + strand, within MPMX19_03111at 396.836 kb on + strand, within MPMX19_03111at 396.836 kb on + strand, within MPMX19_03111at 396.836 kb on + strand, within MPMX19_03111at 396.836 kb on + strand, within MPMX19_03111at 396.837 kb on - strand, within MPMX19_03111at 396.837 kb on - strand, within MPMX19_03111at 396.837 kb on - strand, within MPMX19_03111at 396.837 kb on - strand, within MPMX19_03111at 396.932 kb on + strand, within MPMX19_03111at 397.692 kb on + strandat 397.692 kb on + strandat 397.733 kb on + strandat 397.733 kb on + strandat 397.733 kb on + strandat 397.733 kb on + strandat 397.733 kb on + strandat 397.734 kb on - strandat 397.734 kb on - strandat 397.734 kb on - strandat 397.734 kb on - strandat 397.734 kb on - strandat 397.794 kb on + strand, within MPMX19_03112at 397.794 kb on + strand, within MPMX19_03112at 397.794 kb on + strand, within MPMX19_03112at 397.794 kb on + strand, within MPMX19_03112at 397.794 kb on + strand, within MPMX19_03112at 397.794 kb on + strand, within MPMX19_03112at 397.794 kb on + strand, within MPMX19_03112at 397.794 kb on + strand, within MPMX19_03112at 397.795 kb on - strand, within MPMX19_03112at 397.795 kb on - strand, within MPMX19_03112at 397.795 kb on - strand, within MPMX19_03112at 397.795 kb on - strand, within MPMX19_03112at 397.795 kb on - strand, within MPMX19_03112at 397.795 kb on - strand, within MPMX19_03112at 397.795 kb on - strand, within MPMX19_03112at 397.795 kb on - strand, within MPMX19_03112at 397.795 kb on - strand, within MPMX19_03112at 398.265 kb on + strand, within MPMX19_03112at 398.265 kb on + strand, within MPMX19_03112at 398.265 kb on + strand, within MPMX19_03112at 398.265 kb on + strand, within MPMX19_03112at 398.266 kb on - strand, within MPMX19_03112at 398.266 kb on - strand, within MPMX19_03112at 398.615 kb on + strand, within MPMX19_03113at 398.615 kb on + strand, within MPMX19_03113at 398.615 kb on + strand, within MPMX19_03113at 398.615 kb on + strand, within MPMX19_03113at 398.615 kb on + strand, within MPMX19_03113at 398.615 kb on + strand, within MPMX19_03113at 398.616 kb on - strand, within MPMX19_03113at 398.616 kb on - strand, within MPMX19_03113at 398.616 kb on - strand, within MPMX19_03113at 398.616 kb on - strand, within MPMX19_03113at 398.616 kb on - strand, within MPMX19_03113at 398.867 kb on + strand, within MPMX19_03113at 398.868 kb on - strand, within MPMX19_03113at 398.868 kb on - strand, within MPMX19_03113at 398.868 kb on - strand, within MPMX19_03113at 398.891 kb on + strand, within MPMX19_03113at 398.891 kb on + strand, within MPMX19_03113at 398.891 kb on + strand, within MPMX19_03113at 398.891 kb on + strand, within MPMX19_03113at 398.891 kb on + strand, within MPMX19_03113at 398.892 kb on - strand, within MPMX19_03113at 399.131 kb on + strand, within MPMX19_03113at 399.131 kb on + strand, within MPMX19_03113at 399.131 kb on + strand, within MPMX19_03113at 399.131 kb on + strand, within MPMX19_03113at 399.132 kb on - strand, within MPMX19_03113at 399.132 kb on - strand, within MPMX19_03113at 399.132 kb on - strand, within MPMX19_03113at 399.232 kb on + strandat 399.232 kb on + strandat 399.232 kb on + strandat 399.232 kb on + strandat 399.233 kb on - strandat 399.233 kb on - strandat 399.304 kb on + strandat 399.304 kb on + strandat 399.304 kb on + strandat 399.305 kb on - strandat 399.305 kb on - strandat 399.305 kb on - strandat 399.334 kb on + strandat 399.335 kb on - strandat 399.335 kb on - strandat 399.335 kb on - strandat 399.335 kb on - strandat 399.335 kb on - strandat 399.367 kb on + strand, within MPMX19_03114at 399.367 kb on + strand, within MPMX19_03114at 399.391 kb on + strand, within MPMX19_03114at 399.392 kb on - strand, within MPMX19_03114

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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396,836 + MPMX19_03111 0.51 +1.7
396,836 + MPMX19_03111 0.51 -0.1
396,836 + MPMX19_03111 0.51 -0.8
396,836 + MPMX19_03111 0.51 +0.1
396,836 + MPMX19_03111 0.51 -0.3
396,837 - MPMX19_03111 0.51 +0.4
396,837 - MPMX19_03111 0.51 +0.7
396,837 - MPMX19_03111 0.51 -0.0
396,837 - MPMX19_03111 0.51 +1.0
396,932 + MPMX19_03111 0.57 -0.8
397,692 + +0.7
397,692 + -0.6
397,733 + -0.7
397,733 + -1.1
397,733 + -1.8
397,733 + +0.1
397,733 + -0.1
397,734 - -0.2
397,734 - -0.1
397,734 - +0.1
397,734 - +0.1
397,734 - -0.9
397,794 + MPMX19_03112 0.14 -0.3
397,794 + MPMX19_03112 0.14 +0.4
397,794 + MPMX19_03112 0.14 +1.1
397,794 + MPMX19_03112 0.14 -1.1
397,794 + MPMX19_03112 0.14 -0.6
397,794 + MPMX19_03112 0.14 +0.7
397,794 + MPMX19_03112 0.14 -0.9
397,794 + MPMX19_03112 0.14 -0.6
397,795 - MPMX19_03112 0.14 +0.2
397,795 - MPMX19_03112 0.14 -0.3
397,795 - MPMX19_03112 0.14 +0.0
397,795 - MPMX19_03112 0.14 -0.9
397,795 - MPMX19_03112 0.14 -1.1
397,795 - MPMX19_03112 0.14 -1.4
397,795 - MPMX19_03112 0.14 -0.6
397,795 - MPMX19_03112 0.14 -0.3
397,795 - MPMX19_03112 0.14 -0.6
398,265 + MPMX19_03112 0.77 +1.3
398,265 + MPMX19_03112 0.77 +0.3
398,265 + MPMX19_03112 0.77 -1.1
398,265 + MPMX19_03112 0.77 -2.0
398,266 - MPMX19_03112 0.78 -0.4
398,266 - MPMX19_03112 0.78 +0.7
398,615 + MPMX19_03113 0.21 -1.1
398,615 + MPMX19_03113 0.21 -0.6
398,615 + MPMX19_03113 0.21 -0.9
398,615 + MPMX19_03113 0.21 -0.9
398,615 + MPMX19_03113 0.21 +0.6
398,615 + MPMX19_03113 0.21 +0.2
398,616 - MPMX19_03113 0.21 +0.7
398,616 - MPMX19_03113 0.21 +1.1
398,616 - MPMX19_03113 0.21 +1.7
398,616 - MPMX19_03113 0.21 +1.7
398,616 - MPMX19_03113 0.21 -2.3
398,867 + MPMX19_03113 0.52 -0.3
398,868 - MPMX19_03113 0.52 -1.0
398,868 - MPMX19_03113 0.52 +0.4
398,868 - MPMX19_03113 0.52 -0.6
398,891 + MPMX19_03113 0.54 -0.6
398,891 + MPMX19_03113 0.54 -1.6
398,891 + MPMX19_03113 0.54 -1.1
398,891 + MPMX19_03113 0.54 +0.1
398,891 + MPMX19_03113 0.54 -1.4
398,892 - MPMX19_03113 0.55 +1.7
399,131 + MPMX19_03113 0.83 -0.6
399,131 + MPMX19_03113 0.83 -2.3
399,131 + MPMX19_03113 0.83 +0.3
399,131 + MPMX19_03113 0.83 -0.6
399,132 - MPMX19_03113 0.83 -0.0
399,132 - MPMX19_03113 0.83 -2.3
399,132 - MPMX19_03113 0.83 -0.4
399,232 + -0.8
399,232 + -0.9
399,232 + +0.4
399,232 + -0.6
399,233 - -1.1
399,233 - -1.2
399,304 + -1.6
399,304 + +0.4
399,304 + +0.1
399,305 - -1.4
399,305 - +0.5
399,305 - -0.6
399,334 + +1.1
399,335 - -0.6
399,335 - -0.8
399,335 - -0.3
399,335 - -0.8
399,335 - -1.5
399,367 + MPMX19_03114 0.11 +1.4
399,367 + MPMX19_03114 0.11 -1.5
399,391 + MPMX19_03114 0.13 +0.7
399,392 - MPMX19_03114 0.13 +0.4

Or see this region's nucleotide sequence