Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03090

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03089 and MPMX19_03090 overlap by 4 nucleotidesMPMX19_03090 and MPMX19_03091 are separated by 33 nucleotidesMPMX19_03091 and MPMX19_03092 overlap by 4 nucleotides MPMX19_03089: MPMX19_03089 - Macrolide export protein MacA, at 360,045 to 361,253 _03089 MPMX19_03090: MPMX19_03090 - Macrolide export ATP-binding/permease protein MacB, at 361,250 to 363,181 _03090 MPMX19_03091: MPMX19_03091 - hypothetical protein, at 363,215 to 364,087 _03091 MPMX19_03092: MPMX19_03092 - High-affinity zinc uptake system membrane protein ZnuB, at 364,084 to 364,974 _03092 Position (kb) 361 362 363 364Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 360.492 kb on + strand, within MPMX19_03089at 360.493 kb on - strand, within MPMX19_03089at 360.493 kb on - strand, within MPMX19_03089at 360.493 kb on - strand, within MPMX19_03089at 360.604 kb on - strand, within MPMX19_03089at 360.615 kb on + strand, within MPMX19_03089at 360.615 kb on + strand, within MPMX19_03089at 360.615 kb on + strand, within MPMX19_03089at 360.615 kb on + strand, within MPMX19_03089at 360.615 kb on + strand, within MPMX19_03089at 360.615 kb on + strand, within MPMX19_03089at 360.615 kb on + strand, within MPMX19_03089at 360.615 kb on + strand, within MPMX19_03089at 360.616 kb on - strand, within MPMX19_03089at 360.616 kb on - strand, within MPMX19_03089at 360.616 kb on - strand, within MPMX19_03089at 360.616 kb on - strand, within MPMX19_03089at 360.616 kb on - strand, within MPMX19_03089at 360.616 kb on - strand, within MPMX19_03089at 360.616 kb on - strand, within MPMX19_03089at 360.616 kb on - strand, within MPMX19_03089at 360.616 kb on - strand, within MPMX19_03089at 360.616 kb on - strand, within MPMX19_03089at 360.681 kb on + strand, within MPMX19_03089at 360.681 kb on + strand, within MPMX19_03089at 360.681 kb on + strand, within MPMX19_03089at 360.681 kb on + strand, within MPMX19_03089at 360.681 kb on + strand, within MPMX19_03089at 360.681 kb on + strand, within MPMX19_03089at 360.682 kb on - strand, within MPMX19_03089at 360.682 kb on - strand, within MPMX19_03089at 360.786 kb on + strand, within MPMX19_03089at 360.786 kb on + strand, within MPMX19_03089at 360.786 kb on + strand, within MPMX19_03089at 360.786 kb on + strand, within MPMX19_03089at 360.786 kb on + strand, within MPMX19_03089at 360.787 kb on - strand, within MPMX19_03089at 360.787 kb on - strand, within MPMX19_03089at 360.787 kb on - strand, within MPMX19_03089at 360.787 kb on - strand, within MPMX19_03089at 360.787 kb on - strand, within MPMX19_03089at 360.933 kb on + strand, within MPMX19_03089at 360.933 kb on + strand, within MPMX19_03089at 360.933 kb on + strand, within MPMX19_03089at 360.933 kb on + strand, within MPMX19_03089at 360.934 kb on - strand, within MPMX19_03089at 360.934 kb on - strand, within MPMX19_03089at 360.934 kb on - strand, within MPMX19_03089at 360.934 kb on - strand, within MPMX19_03089at 360.934 kb on - strand, within MPMX19_03089at 361.292 kb on + strandat 361.292 kb on + strandat 361.292 kb on + strandat 361.292 kb on + strandat 361.292 kb on + strandat 361.293 kb on - strandat 361.293 kb on - strandat 361.293 kb on - strandat 361.293 kb on - strandat 361.293 kb on - strandat 361.293 kb on - strandat 361.538 kb on + strand, within MPMX19_03090at 361.538 kb on + strand, within MPMX19_03090at 361.538 kb on + strand, within MPMX19_03090at 361.538 kb on + strand, within MPMX19_03090at 361.538 kb on + strand, within MPMX19_03090at 361.538 kb on + strand, within MPMX19_03090at 361.539 kb on - strand, within MPMX19_03090at 361.539 kb on - strand, within MPMX19_03090at 361.539 kb on - strand, within MPMX19_03090at 361.539 kb on - strand, within MPMX19_03090at 361.539 kb on - strand, within MPMX19_03090at 361.539 kb on - strand, within MPMX19_03090at 361.539 kb on - strand, within MPMX19_03090at 361.539 kb on - strand, within MPMX19_03090at 361.539 kb on - strand, within MPMX19_03090at 361.592 kb on + strand, within MPMX19_03090at 361.593 kb on - strand, within MPMX19_03090at 361.946 kb on - strand, within MPMX19_03090at 361.981 kb on + strand, within MPMX19_03090at 362.106 kb on + strand, within MPMX19_03090at 362.106 kb on + strand, within MPMX19_03090at 362.107 kb on - strand, within MPMX19_03090at 362.107 kb on - strand, within MPMX19_03090at 362.107 kb on - strand, within MPMX19_03090at 362.183 kb on + strand, within MPMX19_03090at 362.183 kb on + strand, within MPMX19_03090at 362.183 kb on + strand, within MPMX19_03090at 362.183 kb on + strand, within MPMX19_03090at 362.183 kb on + strand, within MPMX19_03090at 362.183 kb on + strand, within MPMX19_03090at 362.183 kb on + strand, within MPMX19_03090at 362.183 kb on + strand, within MPMX19_03090at 362.183 kb on + strand, within MPMX19_03090at 362.183 kb on + strand, within MPMX19_03090at 362.183 kb on + strand, within MPMX19_03090at 362.184 kb on - strand, within MPMX19_03090at 362.184 kb on - strand, within MPMX19_03090at 362.184 kb on - strand, within MPMX19_03090at 362.184 kb on - strand, within MPMX19_03090at 362.184 kb on - strand, within MPMX19_03090at 362.184 kb on - strand, within MPMX19_03090at 362.184 kb on - strand, within MPMX19_03090at 362.184 kb on - strand, within MPMX19_03090at 362.184 kb on - strand, within MPMX19_03090at 362.288 kb on + strand, within MPMX19_03090at 362.289 kb on - strand, within MPMX19_03090at 363.179 kb on + strandat 363.180 kb on - strandat 363.180 kb on - strandat 363.399 kb on + strand, within MPMX19_03091at 363.399 kb on + strand, within MPMX19_03091at 363.399 kb on + strand, within MPMX19_03091at 363.400 kb on - strand, within MPMX19_03091at 363.801 kb on + strand, within MPMX19_03091

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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360,492 + MPMX19_03089 0.37 -0.0
360,493 - MPMX19_03089 0.37 -0.3
360,493 - MPMX19_03089 0.37 -1.5
360,493 - MPMX19_03089 0.37 -1.1
360,604 - MPMX19_03089 0.46 -0.9
360,615 + MPMX19_03089 0.47 -1.2
360,615 + MPMX19_03089 0.47 -1.2
360,615 + MPMX19_03089 0.47 -0.2
360,615 + MPMX19_03089 0.47 +1.3
360,615 + MPMX19_03089 0.47 +0.2
360,615 + MPMX19_03089 0.47 -1.0
360,615 + MPMX19_03089 0.47 +0.7
360,615 + MPMX19_03089 0.47 -0.5
360,616 - MPMX19_03089 0.47 -1.3
360,616 - MPMX19_03089 0.47 +1.1
360,616 - MPMX19_03089 0.47 -1.0
360,616 - MPMX19_03089 0.47 +0.5
360,616 - MPMX19_03089 0.47 +0.4
360,616 - MPMX19_03089 0.47 -1.8
360,616 - MPMX19_03089 0.47 -1.3
360,616 - MPMX19_03089 0.47 +2.3
360,616 - MPMX19_03089 0.47 -0.6
360,616 - MPMX19_03089 0.47 +0.1
360,681 + MPMX19_03089 0.53 +0.1
360,681 + MPMX19_03089 0.53 -0.9
360,681 + MPMX19_03089 0.53 +1.7
360,681 + MPMX19_03089 0.53 -1.8
360,681 + MPMX19_03089 0.53 +2.3
360,681 + MPMX19_03089 0.53 -0.1
360,682 - MPMX19_03089 0.53 -1.5
360,682 - MPMX19_03089 0.53 -1.6
360,786 + MPMX19_03089 0.61 -0.1
360,786 + MPMX19_03089 0.61 -0.8
360,786 + MPMX19_03089 0.61 +0.1
360,786 + MPMX19_03089 0.61 -1.1
360,786 + MPMX19_03089 0.61 -1.1
360,787 - MPMX19_03089 0.61 +1.7
360,787 - MPMX19_03089 0.61 -0.6
360,787 - MPMX19_03089 0.61 +0.4
360,787 - MPMX19_03089 0.61 +0.7
360,787 - MPMX19_03089 0.61 -0.6
360,933 + MPMX19_03089 0.73 -0.6
360,933 + MPMX19_03089 0.73 -0.3
360,933 + MPMX19_03089 0.73 -0.3
360,933 + MPMX19_03089 0.73 -0.3
360,934 - MPMX19_03089 0.74 -0.4
360,934 - MPMX19_03089 0.74 -0.9
360,934 - MPMX19_03089 0.74 +0.5
360,934 - MPMX19_03089 0.74 +0.1
360,934 - MPMX19_03089 0.74 -0.6
361,292 + +0.1
361,292 + -1.4
361,292 + +0.4
361,292 + -2.7
361,292 + -1.3
361,293 - +1.0
361,293 - -1.9
361,293 - -0.0
361,293 - +0.1
361,293 - -0.3
361,293 - -1.6
361,538 + MPMX19_03090 0.15 -1.3
361,538 + MPMX19_03090 0.15 +0.0
361,538 + MPMX19_03090 0.15 +1.3
361,538 + MPMX19_03090 0.15 -1.3
361,538 + MPMX19_03090 0.15 +1.0
361,538 + MPMX19_03090 0.15 -0.6
361,539 - MPMX19_03090 0.15 -1.3
361,539 - MPMX19_03090 0.15 -0.7
361,539 - MPMX19_03090 0.15 +0.5
361,539 - MPMX19_03090 0.15 -0.9
361,539 - MPMX19_03090 0.15 +0.1
361,539 - MPMX19_03090 0.15 -0.9
361,539 - MPMX19_03090 0.15 +1.5
361,539 - MPMX19_03090 0.15 -1.0
361,539 - MPMX19_03090 0.15 -2.8
361,592 + MPMX19_03090 0.18 -0.3
361,593 - MPMX19_03090 0.18 -0.3
361,946 - MPMX19_03090 0.36 -0.3
361,981 + MPMX19_03090 0.38 +1.1
362,106 + MPMX19_03090 0.44 +0.4
362,106 + MPMX19_03090 0.44 +0.1
362,107 - MPMX19_03090 0.44 -1.3
362,107 - MPMX19_03090 0.44 +1.0
362,107 - MPMX19_03090 0.44 +2.0
362,183 + MPMX19_03090 0.48 -1.6
362,183 + MPMX19_03090 0.48 +0.7
362,183 + MPMX19_03090 0.48 -0.3
362,183 + MPMX19_03090 0.48 +0.1
362,183 + MPMX19_03090 0.48 -0.1
362,183 + MPMX19_03090 0.48 -0.1
362,183 + MPMX19_03090 0.48 +1.4
362,183 + MPMX19_03090 0.48 -0.5
362,183 + MPMX19_03090 0.48 -0.6
362,183 + MPMX19_03090 0.48 -0.9
362,183 + MPMX19_03090 0.48 +1.3
362,184 - MPMX19_03090 0.48 -0.9
362,184 - MPMX19_03090 0.48 -0.4
362,184 - MPMX19_03090 0.48 +1.7
362,184 - MPMX19_03090 0.48 -0.6
362,184 - MPMX19_03090 0.48 +0.1
362,184 - MPMX19_03090 0.48 -0.9
362,184 - MPMX19_03090 0.48 +1.7
362,184 - MPMX19_03090 0.48 +0.1
362,184 - MPMX19_03090 0.48 +0.7
362,288 + MPMX19_03090 0.54 -1.7
362,289 - MPMX19_03090 0.54 -0.6
363,179 + +0.1
363,180 - +0.0
363,180 - +0.1
363,399 + MPMX19_03091 0.21 -0.6
363,399 + MPMX19_03091 0.21 -0.6
363,399 + MPMX19_03091 0.21 +0.7
363,400 - MPMX19_03091 0.21 +0.1
363,801 + MPMX19_03091 0.67 -0.3

Or see this region's nucleotide sequence