Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03009 and MPMX19_03010 are separated by 421 nucleotides MPMX19_03010 and MPMX19_03011 are separated by 100 nucleotides MPMX19_03011 and MPMX19_03012 overlap by 61 nucleotides
MPMX19_03009: MPMX19_03009 - Erythritol catabolism regulatory protein EryD, at 272,388 to 273,374
_03009
MPMX19_03010: MPMX19_03010 - 3,4-dihydroxy-2-butanone 4-phosphate synthase, at 273,796 to 274,458
_03010
MPMX19_03011: MPMX19_03011 - hypothetical protein, at 274,559 to 275,140
_03011
MPMX19_03012: MPMX19_03012 - hypothetical protein, at 275,080 to 275,538
_03012
Position (kb) 273
274
275 Strain fitness (log2 ratio) -2
-1
0
1
2 at 273.494 kb on + strand at 273.494 kb on + strand at 273.494 kb on + strand at 273.494 kb on + strand at 273.494 kb on + strand at 273.494 kb on + strand at 273.494 kb on + strand at 273.494 kb on + strand at 273.494 kb on + strand at 273.494 kb on + strand at 273.494 kb on + strand at 273.494 kb on + strand at 273.495 kb on - strand at 273.495 kb on - strand at 273.495 kb on - strand at 273.495 kb on - strand at 273.495 kb on - strand at 273.495 kb on - strand at 273.495 kb on - strand at 273.637 kb on + strand at 273.637 kb on + strand at 273.637 kb on + strand at 273.638 kb on - strand at 273.638 kb on - strand at 273.638 kb on - strand at 273.808 kb on + strand at 273.808 kb on + strand at 273.808 kb on + strand at 273.808 kb on + strand at 273.808 kb on + strand at 273.808 kb on + strand at 273.809 kb on - strand at 274.269 kb on + strand, within MPMX19_03010 at 274.270 kb on - strand, within MPMX19_03010 at 274.561 kb on - strand at 274.668 kb on + strand, within MPMX19_03011 at 274.669 kb on - strand, within MPMX19_03011 at 274.848 kb on + strand, within MPMX19_03011 at 274.848 kb on + strand, within MPMX19_03011 at 274.848 kb on + strand, within MPMX19_03011 at 274.849 kb on - strand, within MPMX19_03011 at 274.849 kb on - strand, within MPMX19_03011 at 274.849 kb on - strand, within MPMX19_03011 at 274.849 kb on - strand, within MPMX19_03011 at 274.924 kb on - strand, within MPMX19_03011 at 274.924 kb on - strand, within MPMX19_03011 at 274.924 kb on - strand, within MPMX19_03011 at 274.971 kb on + strand, within MPMX19_03011
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 273,494 + +0.4 273,494 + +2.3 273,494 + +0.7 273,494 + -0.6 273,494 + -0.1 273,494 + +0.1 273,494 + -0.4 273,494 + +0.7 273,494 + +1.7 273,494 + -0.6 273,494 + -2.5 273,494 + +0.7 273,495 - -0.4 273,495 - -0.6 273,495 - -1.6 273,495 - -0.9 273,495 - -0.3 273,495 - -0.3 273,495 - +0.5 273,637 + -1.3 273,637 + -0.9 273,637 + -1.3 273,638 - -0.7 273,638 - +0.1 273,638 - -0.3 273,808 + -0.6 273,808 + -0.3 273,808 + +0.1 273,808 + -1.3 273,808 + -0.3 273,808 + +0.9 273,809 - +0.1 274,269 + MPMX19_03010 0.71 -1.3 274,270 - MPMX19_03010 0.71 -0.6 274,561 - -0.7 274,668 + MPMX19_03011 0.19 -1.8 274,669 - MPMX19_03011 0.19 -2.0 274,848 + MPMX19_03011 0.50 -1.2 274,848 + MPMX19_03011 0.50 -0.8 274,848 + MPMX19_03011 0.50 -0.3 274,849 - MPMX19_03011 0.50 -1.6 274,849 - MPMX19_03011 0.50 +1.7 274,849 - MPMX19_03011 0.50 -0.1 274,849 - MPMX19_03011 0.50 -1.1 274,924 - MPMX19_03011 0.63 -0.3 274,924 - MPMX19_03011 0.63 -0.6 274,924 - MPMX19_03011 0.63 -0.6 274,971 + MPMX19_03011 0.71 -0.3
Or see this region's nucleotide sequence