Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02898 and MPMX19_02899 are separated by 505 nucleotides MPMX19_02899 and MPMX19_02900 overlap by 4 nucleotides
MPMX19_02898: MPMX19_02898 - hypothetical protein, at 152,947 to 154,317
_02898
MPMX19_02899: MPMX19_02899 - hypothetical protein, at 154,823 to 155,476
_02899
MPMX19_02900: MPMX19_02900 - hypothetical protein, at 155,473 to 158,457
_02900
Position (kb) 154
155
156 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 153.852 kb on - strand, within MPMX19_02898 at 153.868 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.887 kb on + strand, within MPMX19_02898 at 153.888 kb on - strand, within MPMX19_02898 at 153.888 kb on - strand, within MPMX19_02898 at 153.944 kb on + strand, within MPMX19_02898 at 153.944 kb on + strand, within MPMX19_02898 at 153.945 kb on - strand, within MPMX19_02898 at 154.026 kb on + strand, within MPMX19_02898 at 154.060 kb on + strand, within MPMX19_02898 at 154.060 kb on + strand, within MPMX19_02898 at 154.060 kb on + strand, within MPMX19_02898 at 154.061 kb on - strand, within MPMX19_02898 at 154.098 kb on - strand, within MPMX19_02898 at 154.098 kb on - strand, within MPMX19_02898 at 154.112 kb on + strand, within MPMX19_02898 at 154.112 kb on + strand, within MPMX19_02898 at 154.112 kb on + strand, within MPMX19_02898 at 154.197 kb on + strand at 154.197 kb on + strand at 154.197 kb on + strand at 154.198 kb on - strand at 154.198 kb on - strand at 154.198 kb on - strand at 154.198 kb on - strand at 154.383 kb on + strand at 154.453 kb on + strand at 154.453 kb on + strand at 154.453 kb on + strand at 154.453 kb on + strand at 154.453 kb on + strand at 154.453 kb on + strand at 154.453 kb on + strand at 154.453 kb on + strand at 154.454 kb on - strand at 154.454 kb on - strand at 154.454 kb on - strand at 154.454 kb on - strand at 154.454 kb on - strand at 154.454 kb on - strand at 154.493 kb on + strand at 154.494 kb on - strand at 154.494 kb on - strand at 154.610 kb on + strand at 154.610 kb on + strand at 154.611 kb on - strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.874 kb on + strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.875 kb on - strand at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.937 kb on + strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 154.938 kb on - strand, within MPMX19_02899 at 155.032 kb on + strand, within MPMX19_02899 at 155.032 kb on + strand, within MPMX19_02899 at 155.032 kb on + strand, within MPMX19_02899 at 155.032 kb on + strand, within MPMX19_02899 at 155.033 kb on - strand, within MPMX19_02899 at 155.033 kb on - strand, within MPMX19_02899 at 155.033 kb on - strand, within MPMX19_02899 at 155.033 kb on - strand, within MPMX19_02899 at 155.033 kb on - strand, within MPMX19_02899 at 155.033 kb on - strand, within MPMX19_02899 at 155.033 kb on - strand, within MPMX19_02899 at 155.195 kb on + strand, within MPMX19_02899 at 155.195 kb on + strand, within MPMX19_02899 at 155.196 kb on - strand, within MPMX19_02899 at 155.196 kb on - strand, within MPMX19_02899 at 155.196 kb on - strand, within MPMX19_02899 at 155.196 kb on - strand, within MPMX19_02899 at 155.749 kb on + strand at 155.749 kb on + strand at 155.749 kb on + strand at 155.750 kb on - strand at 155.822 kb on - strand, within MPMX19_02900 at 155.944 kb on + strand, within MPMX19_02900 at 155.944 kb on + strand, within MPMX19_02900 at 155.944 kb on + strand, within MPMX19_02900 at 155.945 kb on - strand, within MPMX19_02900 at 155.945 kb on - strand, within MPMX19_02900 at 156.301 kb on + strand, within MPMX19_02900 at 156.302 kb on - strand, within MPMX19_02900 at 156.370 kb on + strand, within MPMX19_02900 at 156.370 kb on + strand, within MPMX19_02900 at 156.371 kb on - strand, within MPMX19_02900 at 156.371 kb on - strand, within MPMX19_02900 at 156.443 kb on + strand, within MPMX19_02900 at 156.443 kb on + strand, within MPMX19_02900 at 156.444 kb on - strand, within MPMX19_02900 at 156.444 kb on - strand, within MPMX19_02900 at 156.444 kb on - strand, within MPMX19_02900
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 153,852 - MPMX19_02898 0.66 -0.9 153,868 + MPMX19_02898 0.67 -0.3 153,887 + MPMX19_02898 0.69 -0.4 153,887 + MPMX19_02898 0.69 -1.3 153,887 + MPMX19_02898 0.69 -1.1 153,887 + MPMX19_02898 0.69 -0.6 153,887 + MPMX19_02898 0.69 +0.1 153,887 + MPMX19_02898 0.69 +0.1 153,887 + MPMX19_02898 0.69 -1.1 153,887 + MPMX19_02898 0.69 -0.6 153,888 - MPMX19_02898 0.69 -0.4 153,888 - MPMX19_02898 0.69 -0.7 153,944 + MPMX19_02898 0.73 -0.2 153,944 + MPMX19_02898 0.73 -0.7 153,945 - MPMX19_02898 0.73 +0.1 154,026 + MPMX19_02898 0.79 +0.7 154,060 + MPMX19_02898 0.81 -1.0 154,060 + MPMX19_02898 0.81 -0.6 154,060 + MPMX19_02898 0.81 +0.9 154,061 - MPMX19_02898 0.81 -0.1 154,098 - MPMX19_02898 0.84 -0.3 154,098 - MPMX19_02898 0.84 -0.8 154,112 + MPMX19_02898 0.85 +0.7 154,112 + MPMX19_02898 0.85 -0.3 154,112 + MPMX19_02898 0.85 -1.6 154,197 + -1.2 154,197 + -1.1 154,197 + -1.4 154,198 - -0.3 154,198 - +0.7 154,198 - +1.9 154,198 - -0.5 154,383 + +1.1 154,453 + -0.6 154,453 + +0.7 154,453 + -1.5 154,453 + +0.5 154,453 + -0.6 154,453 + -0.9 154,453 + -0.3 154,453 + -1.3 154,454 - -1.6 154,454 - -1.1 154,454 - +0.1 154,454 - +0.4 154,454 - -0.3 154,454 - -0.6 154,493 + +1.4 154,494 - -0.6 154,494 - +0.9 154,610 + -0.3 154,610 + +0.1 154,611 - -0.6 154,874 + -0.9 154,874 + -1.1 154,874 + +0.9 154,874 + +0.4 154,874 + +0.3 154,874 + -0.9 154,874 + -1.1 154,874 + -0.3 154,874 + -0.3 154,874 + -1.1 154,875 - -0.6 154,875 - +0.4 154,875 - +0.1 154,875 - +1.7 154,875 - +0.9 154,875 - +0.1 154,875 - +0.7 154,875 - +0.1 154,875 - -0.6 154,875 - -0.7 154,937 + MPMX19_02899 0.17 -0.6 154,937 + MPMX19_02899 0.17 +0.9 154,937 + MPMX19_02899 0.17 -1.3 154,937 + MPMX19_02899 0.17 +1.2 154,937 + MPMX19_02899 0.17 -1.0 154,937 + MPMX19_02899 0.17 -0.8 154,937 + MPMX19_02899 0.17 -3.1 154,937 + MPMX19_02899 0.17 -0.9 154,937 + MPMX19_02899 0.17 -0.8 154,938 - MPMX19_02899 0.18 -0.3 154,938 - MPMX19_02899 0.18 -1.3 154,938 - MPMX19_02899 0.18 -0.3 154,938 - MPMX19_02899 0.18 -1.9 154,938 - MPMX19_02899 0.18 +0.2 154,938 - MPMX19_02899 0.18 +0.1 154,938 - MPMX19_02899 0.18 -1.1 154,938 - MPMX19_02899 0.18 -0.6 155,032 + MPMX19_02899 0.32 -1.5 155,032 + MPMX19_02899 0.32 -2.4 155,032 + MPMX19_02899 0.32 +1.7 155,032 + MPMX19_02899 0.32 +0.7 155,033 - MPMX19_02899 0.32 +2.0 155,033 - MPMX19_02899 0.32 -0.6 155,033 - MPMX19_02899 0.32 +0.7 155,033 - MPMX19_02899 0.32 -1.2 155,033 - MPMX19_02899 0.32 -2.5 155,033 - MPMX19_02899 0.32 -0.4 155,033 - MPMX19_02899 0.32 +0.7 155,195 + MPMX19_02899 0.57 +0.2 155,195 + MPMX19_02899 0.57 -1.0 155,196 - MPMX19_02899 0.57 -0.6 155,196 - MPMX19_02899 0.57 -1.1 155,196 - MPMX19_02899 0.57 -0.9 155,196 - MPMX19_02899 0.57 -1.9 155,749 + -2.1 155,749 + -1.3 155,749 + +1.1 155,750 - -1.0 155,822 - MPMX19_02900 0.12 -0.9 155,944 + MPMX19_02900 0.16 +0.7 155,944 + MPMX19_02900 0.16 +0.1 155,944 + MPMX19_02900 0.16 -1.4 155,945 - MPMX19_02900 0.16 +0.1 155,945 - MPMX19_02900 0.16 +0.1 156,301 + MPMX19_02900 0.28 -0.4 156,302 - MPMX19_02900 0.28 -1.3 156,370 + MPMX19_02900 0.30 -0.6 156,370 + MPMX19_02900 0.30 -0.3 156,371 - MPMX19_02900 0.30 -0.8 156,371 - MPMX19_02900 0.30 +0.4 156,443 + MPMX19_02900 0.32 +0.5 156,443 + MPMX19_02900 0.32 +0.9 156,444 - MPMX19_02900 0.33 +0.1 156,444 - MPMX19_02900 0.33 -1.9 156,444 - MPMX19_02900 0.33 -0.9
Or see this region's nucleotide sequence