Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02018

Experiment: NF_with10percent_fullN

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NF_with10percent_fullN
2,107,076	+		MPMX19_02016	0.66	-1.0
2,107,076	+		MPMX19_02016	0.66	-1.0
2,107,076	+		MPMX19_02016	0.66	+0.3
2,107,076	+		MPMX19_02016	0.66	-1.0
2,107,076	+		MPMX19_02016	0.66	-0.8
2,107,076	+		MPMX19_02016	0.66	-1.0
2,107,076	+		MPMX19_02016	0.66	-1.4
2,107,076	+		MPMX19_02016	0.66	-0.4
2,107,076	+		MPMX19_02016	0.66	-0.6
2,107,076	+		MPMX19_02016	0.66	-0.7
2,107,076	+		MPMX19_02016	0.66	+0.2
2,107,077	-		MPMX19_02016	0.66	-0.7
2,107,077	-		MPMX19_02016	0.66	+0.1
2,107,077	-		MPMX19_02016	0.66	-0.3
2,107,077	-		MPMX19_02016	0.66	+0.5
2,107,077	-		MPMX19_02016	0.66	-0.3
2,107,077	-		MPMX19_02016	0.66	+0.3
2,107,077	-		MPMX19_02016	0.66	-1.1
2,107,077	-		MPMX19_02016	0.66	+0.0
2,107,077	-		MPMX19_02016	0.66	+2.2
2,107,077	-		MPMX19_02016	0.66	-0.4
2,107,077	-		MPMX19_02016	0.66	-1.2
2,107,077	-		MPMX19_02016	0.66	-2.8
2,107,077	-		MPMX19_02016	0.66	-0.2
2,107,077	-		MPMX19_02016	0.66	-0.3
2,107,077	-		MPMX19_02016	0.66	-1.7
2,107,140	-		MPMX19_02016	0.72	-0.8
2,107,172	+		MPMX19_02016	0.76	-1.5
2,107,172	+		MPMX19_02016	0.76	-0.7
2,107,172	+		MPMX19_02016	0.76	-1.6
2,107,172	+		MPMX19_02016	0.76	-0.9
2,107,172	+		MPMX19_02016	0.76	+0.2
2,107,172	+		MPMX19_02016	0.76	+0.8
2,107,172	+		MPMX19_02016	0.76	-0.2
2,107,172	+		MPMX19_02016	0.76	-0.4
2,107,172	+		MPMX19_02016	0.76	-1.9
2,107,172	+		MPMX19_02016	0.76	-0.8
2,107,172	+		MPMX19_02016	0.76	+0.0
2,107,173	-		MPMX19_02016	0.76	-1.3
2,107,173	-		MPMX19_02016	0.76	+0.3
2,107,173	-		MPMX19_02016	0.76	+0.4
2,107,173	-		MPMX19_02016	0.76	-0.4
2,107,173	-		MPMX19_02016	0.76	-1.4
2,107,173	-		MPMX19_02016	0.76	-0.7
2,107,173	-		MPMX19_02016	0.76	-0.6
2,107,173	-		MPMX19_02016	0.76	-0.6
2,107,283	+		MPMX19_02016	0.87	+0.0
2,107,283	+		MPMX19_02016	0.87	-0.6
2,107,283	+		MPMX19_02016	0.87	-0.7
2,107,283	+		MPMX19_02016	0.87	-1.0
2,107,283	+		MPMX19_02016	0.87	+1.3
2,107,283	+		MPMX19_02016	0.87	+3.2
2,107,283	+		MPMX19_02016	0.87	-0.6
2,107,284	-		MPMX19_02016	0.88	+1.0
2,107,284	-		MPMX19_02016	0.88	-0.7
2,107,415	-				-1.2
2,107,415	-				-0.1
2,107,509	+				-1.7
2,107,509	+				-2.6
2,107,509	+				+0.0
2,107,509	+				+0.0
2,107,509	+				-0.8
2,107,509	+				-0.4
2,107,509	+				-0.3
2,107,509	+				-1.6
2,107,510	-				-1.0
2,107,510	-				+1.0
2,107,510	-				+0.6
2,107,510	-				-0.2
2,107,510	-				-1.0
2,107,510	-				-0.3
2,107,510	-				+0.0
2,107,510	-				-1.4
2,107,590	+		MPMX19_02017	0.11	-0.9
2,107,590	+		MPMX19_02017	0.11	-0.4
2,107,590	+		MPMX19_02017	0.11	-0.4
2,107,590	+		MPMX19_02017	0.11	-0.4
2,107,590	+		MPMX19_02017	0.11	-1.7
2,107,590	+		MPMX19_02017	0.11	-1.9
2,107,590	+		MPMX19_02017	0.11	-0.7
2,107,590	+		MPMX19_02017	0.11	-1.0
2,107,590	+		MPMX19_02017	0.11	+0.1
2,107,590	+		MPMX19_02017	0.11	-1.0
2,107,590	+		MPMX19_02017	0.11	+0.0
2,107,590	+		MPMX19_02017	0.11	-0.9
2,107,590	+		MPMX19_02017	0.11	+0.0
2,107,590	+		MPMX19_02017	0.11	+0.4
2,107,590	+		MPMX19_02017	0.11	-2.1
2,107,590	+		MPMX19_02017	0.11	-2.0
2,107,590	+		MPMX19_02017	0.11	+0.0
2,107,590	+		MPMX19_02017	0.11	+1.0
2,107,590	+		MPMX19_02017	0.11	+0.3
2,107,590	+		MPMX19_02017	0.11	+1.6
2,107,590	+		MPMX19_02017	0.11	+0.6
2,107,590	+		MPMX19_02017	0.11	+0.8
2,107,590	+		MPMX19_02017	0.11	+0.4
2,107,590	+		MPMX19_02017	0.11	+0.0
2,107,590	+		MPMX19_02017	0.11	-0.1
2,107,590	+		MPMX19_02017	0.11	+0.5
2,107,590	+		MPMX19_02017	0.11	+0.0
2,107,591	-		MPMX19_02017	0.12	+1.2
2,107,591	-		MPMX19_02017	0.12	+2.6
2,107,591	-		MPMX19_02017	0.12	+0.6
2,107,591	-		MPMX19_02017	0.12	+0.6
2,107,591	-		MPMX19_02017	0.12	+0.3
2,107,591	-		MPMX19_02017	0.12	-0.2
2,107,591	-		MPMX19_02017	0.12	-1.9
2,107,591	-		MPMX19_02017	0.12	+0.0
2,107,591	-		MPMX19_02017	0.12	-1.0
2,107,591	-		MPMX19_02017	0.12	-0.4
2,107,591	-		MPMX19_02017	0.12	+0.3
2,107,591	-		MPMX19_02017	0.12	-0.4
2,107,591	-		MPMX19_02017	0.12	-1.0
2,107,591	-		MPMX19_02017	0.12	-0.4
2,107,591	-		MPMX19_02017	0.12	-0.7
2,107,591	-		MPMX19_02017	0.12	-1.9
2,107,591	-		MPMX19_02017	0.12	-1.2
2,107,591	-		MPMX19_02017	0.12	-0.4
2,107,591	-		MPMX19_02017	0.12	-0.4
2,107,591	-		MPMX19_02017	0.12	-0.4
2,107,591	-		MPMX19_02017	0.12	-1.0
2,107,668	+		MPMX19_02017	0.30	-0.2
2,107,668	+		MPMX19_02017	0.30	+0.6
2,107,668	+		MPMX19_02017	0.30	+0.0
2,107,669	-		MPMX19_02017	0.30	+0.3
2,107,669	-		MPMX19_02017	0.30	+0.6
2,107,669	-		MPMX19_02017	0.30	+1.2
2,107,669	-		MPMX19_02017	0.30	+1.9
2,107,689	+		MPMX19_02017	0.35	-2.0
2,107,689	+		MPMX19_02017	0.35	+0.0
2,107,689	+		MPMX19_02017	0.35	+1.0
2,107,689	+		MPMX19_02017	0.35	+2.2
2,107,689	+		MPMX19_02017	0.35	-1.8
2,107,689	+		MPMX19_02017	0.35	+0.0
2,107,689	+		MPMX19_02017	0.35	-1.0
2,107,690	-		MPMX19_02017	0.35	-0.4
2,107,690	-		MPMX19_02017	0.35	-0.4
2,107,690	-		MPMX19_02017	0.35	-1.9
2,107,690	-		MPMX19_02017	0.35	+0.0
2,107,690	-		MPMX19_02017	0.35	-1.4
2,107,815	+		MPMX19_02017	0.64	+1.0
2,107,815	+		MPMX19_02017	0.64	-2.0
2,107,815	+		MPMX19_02017	0.64	+0.3
2,107,816	-		MPMX19_02017	0.64	-0.1
2,107,816	-		MPMX19_02017	0.64	-1.2
2,107,816	-		MPMX19_02017	0.64	+0.0
2,107,816	-		MPMX19_02017	0.64	-0.7
2,107,971	+				-2.0
2,107,971	+				+0.2
2,107,971	+				-1.3
2,107,971	+				+0.8
2,107,972	-				+0.0
2,107,972	-				+0.6
2,107,980	+				-0.4
2,107,980	+				-0.7
2,107,980	+				+1.6
2,107,980	+				+1.6
2,107,981	-				-0.7
2,107,981	-				-1.2
2,107,981	-				-1.0
2,107,981	-				-1.2
2,107,981	-				+0.0
2,107,981	-				-0.4
2,108,865	+				-1.7
2,108,865	+				-0.3
2,108,866	-				-0.7
2,109,011	+				-1.2
2,109,012	-				-0.4
2,109,126	+				-2.1
2,109,126	+				+1.3
2,109,126	+				-1.1
2,109,126	+				-1.0
2,109,126	+				-1.0
2,109,126	+				-2.0
2,109,126	+				-1.0
2,109,126	+				-0.4
2,109,126	+				+0.1
2,109,126	+				-0.9
2,109,126	+				+0.2
2,109,126	+				-2.0
2,109,126	+				-0.2
2,109,126	+				-0.1
2,109,126	+				-0.3
2,109,126	+				-0.4
2,109,126	+				-1.0
2,109,127	-				+0.3
2,109,127	-				-0.7
2,109,127	-				-1.6
2,109,127	-				-2.0
2,109,127	-				+1.2
2,109,127	-				-0.4
2,109,127	-				+2.0
2,109,127	-				+0.0
2,109,127	-				+1.2
2,109,127	-				-1.7
2,109,127	-				-1.1
2,109,127	-				-2.0
2,109,127	-				+2.3
2,109,127	-				-1.2
2,109,132	+				+0.3
2,109,132	+				-1.7
2,109,132	+				-1.0
2,109,132	+				-0.4
2,109,132	+				-0.7
2,109,132	+				-0.7
2,109,132	+				-1.1
2,109,133	-				-0.4
2,109,133	-				+0.0
2,109,133	-				-0.9
2,109,133	-				-2.0
2,109,234	+				-0.2
2,109,234	+				+0.3
2,109,234	+				-0.4
2,109,234	+				-1.0
2,109,234	+				-0.0
2,109,234	+				-1.2
2,109,234	+				+0.4
2,109,234	+				-0.4
2,109,234	+				+0.0
2,109,234	+				+1.0
2,109,235	-				-0.4
2,109,235	-				-1.1
2,109,235	-				-1.0
2,109,235	-				+0.6
2,109,235	-				-1.4
2,109,235	-				-1.0
2,109,235	-				-1.6
2,109,235	-				+0.0
2,109,235	-				-0.7
2,109,235	-				+0.1
2,109,235	-				-1.0
2,109,235	-				+1.6
2,109,235	-				-0.7
2,109,558	+		MPMX19_02019	0.28	-0.2
2,109,558	+		MPMX19_02019	0.28	+1.9
2,109,558	+		MPMX19_02019	0.28	+0.0
2,109,559	-		MPMX19_02019	0.28	+0.0
2,109,559	-		MPMX19_02019	0.28	-1.7
2,109,559	-		MPMX19_02019	0.28	-0.7
2,109,559	-		MPMX19_02019	0.28	-0.7
2,109,559	-		MPMX19_02019	0.28	-1.0
2,109,559	-		MPMX19_02019	0.28	+0.0
2,109,559	-		MPMX19_02019	0.28	+0.4
2,109,576	+		MPMX19_02019	0.29	-1.0
2,109,576	+		MPMX19_02019	0.29	-1.4
2,109,576	+		MPMX19_02019	0.29	-1.9
2,109,577	-		MPMX19_02019	0.29	-0.3
2,109,577	-		MPMX19_02019	0.29	-1.0
2,109,577	-		MPMX19_02019	0.29	-0.4
2,109,577	-		MPMX19_02019	0.29	-1.4
2,109,885	+		MPMX19_02019	0.49	-0.4
2,109,885	+		MPMX19_02019	0.49	-1.6
2,109,885	+		MPMX19_02019	0.49	+0.0
2,109,885	+		MPMX19_02019	0.49	+0.0