Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00772 and MPMX19_00773 are separated by 135 nucleotides MPMX19_00773 and MPMX19_00774 are separated by 25 nucleotides
MPMX19_00772: MPMX19_00772 - hypothetical protein, at 790,715 to 791,101
_00772
MPMX19_00773: MPMX19_00773 - hypothetical protein, at 791,237 to 791,599
_00773
MPMX19_00774: MPMX19_00774 - hypothetical protein, at 791,625 to 793,262
_00774
Position (kb) 791
792 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 790.342 kb on + strand at 790.343 kb on - strand at 790.512 kb on + strand at 790.512 kb on + strand at 790.512 kb on + strand at 790.512 kb on + strand at 790.512 kb on + strand at 790.513 kb on - strand at 790.513 kb on - strand at 790.531 kb on + strand at 790.542 kb on + strand at 790.542 kb on + strand at 790.543 kb on - strand at 790.590 kb on - strand at 790.622 kb on + strand at 790.622 kb on + strand at 790.622 kb on + strand at 790.622 kb on + strand at 790.622 kb on + strand at 790.622 kb on + strand at 790.622 kb on + strand at 790.623 kb on - strand at 790.623 kb on - strand at 790.623 kb on - strand at 790.623 kb on - strand at 790.623 kb on - strand at 790.624 kb on + strand at 790.624 kb on + strand at 790.624 kb on + strand at 790.624 kb on + strand at 790.625 kb on - strand at 790.625 kb on - strand at 790.625 kb on - strand at 790.625 kb on - strand at 790.625 kb on - strand at 790.625 kb on - strand at 790.625 kb on - strand at 790.625 kb on - strand at 790.625 kb on - strand at 790.625 kb on - strand at 790.667 kb on + strand at 790.668 kb on - strand at 790.668 kb on - strand at 790.668 kb on - strand at 790.679 kb on - strand at 790.752 kb on - strand at 790.979 kb on - strand, within MPMX19_00772 at 790.979 kb on - strand, within MPMX19_00772 at 790.979 kb on - strand, within MPMX19_00772 at 791.147 kb on + strand at 791.147 kb on + strand at 791.147 kb on + strand at 791.148 kb on - strand at 791.148 kb on - strand at 791.168 kb on + strand at 791.168 kb on + strand at 791.168 kb on + strand at 791.168 kb on + strand at 791.237 kb on - strand at 791.339 kb on + strand, within MPMX19_00773 at 791.339 kb on + strand, within MPMX19_00773 at 791.340 kb on - strand, within MPMX19_00773 at 791.340 kb on - strand, within MPMX19_00773 at 791.340 kb on - strand, within MPMX19_00773 at 791.340 kb on - strand, within MPMX19_00773 at 791.340 kb on - strand, within MPMX19_00773 at 791.340 kb on - strand, within MPMX19_00773 at 791.555 kb on + strand, within MPMX19_00773 at 791.555 kb on + strand, within MPMX19_00773 at 791.555 kb on + strand, within MPMX19_00773 at 791.556 kb on - strand, within MPMX19_00773 at 791.556 kb on - strand, within MPMX19_00773 at 791.606 kb on + strand at 791.606 kb on + strand at 791.606 kb on + strand at 791.606 kb on + strand at 791.606 kb on + strand at 791.606 kb on + strand at 791.606 kb on + strand at 791.606 kb on + strand at 791.606 kb on + strand at 791.606 kb on + strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.626 kb on + strand at 791.626 kb on + strand at 791.626 kb on + strand at 791.626 kb on + strand at 791.626 kb on + strand at 791.627 kb on - strand at 791.627 kb on - strand at 791.627 kb on - strand at 791.797 kb on + strand, within MPMX19_00774 at 791.797 kb on + strand, within MPMX19_00774 at 791.798 kb on - strand, within MPMX19_00774 at 791.798 kb on - strand, within MPMX19_00774 at 791.798 kb on - strand, within MPMX19_00774 at 791.798 kb on - strand, within MPMX19_00774 at 791.798 kb on - strand, within MPMX19_00774 at 791.798 kb on - strand, within MPMX19_00774 at 791.798 kb on - strand, within MPMX19_00774 at 791.798 kb on - strand, within MPMX19_00774 at 791.798 kb on - strand, within MPMX19_00774 at 791.956 kb on + strand, within MPMX19_00774 at 791.956 kb on + strand, within MPMX19_00774 at 791.957 kb on - strand, within MPMX19_00774 at 791.957 kb on - strand, within MPMX19_00774 at 791.965 kb on + strand, within MPMX19_00774 at 791.965 kb on + strand, within MPMX19_00774 at 791.966 kb on - strand, within MPMX19_00774 at 791.966 kb on - strand, within MPMX19_00774 at 792.034 kb on + strand, within MPMX19_00774 at 792.166 kb on + strand, within MPMX19_00774 at 792.166 kb on + strand, within MPMX19_00774 at 792.166 kb on + strand, within MPMX19_00774 at 792.166 kb on + strand, within MPMX19_00774 at 792.166 kb on + strand, within MPMX19_00774 at 792.166 kb on + strand, within MPMX19_00774 at 792.166 kb on + strand, within MPMX19_00774 at 792.166 kb on + strand, within MPMX19_00774 at 792.166 kb on + strand, within MPMX19_00774 at 792.166 kb on + strand, within MPMX19_00774 at 792.167 kb on - strand, within MPMX19_00774 at 792.167 kb on - strand, within MPMX19_00774 at 792.167 kb on - strand, within MPMX19_00774 at 792.167 kb on - strand, within MPMX19_00774 at 792.167 kb on - strand, within MPMX19_00774 at 792.167 kb on - strand, within MPMX19_00774 at 792.167 kb on - strand, within MPMX19_00774 at 792.167 kb on - strand, within MPMX19_00774 at 792.167 kb on - strand, within MPMX19_00774 at 792.388 kb on + strand, within MPMX19_00774 at 792.388 kb on + strand, within MPMX19_00774 at 792.388 kb on + strand, within MPMX19_00774 at 792.388 kb on + strand, within MPMX19_00774 at 792.388 kb on + strand, within MPMX19_00774 at 792.388 kb on + strand, within MPMX19_00774 at 792.388 kb on + strand, within MPMX19_00774 at 792.389 kb on - strand, within MPMX19_00774 at 792.389 kb on - strand, within MPMX19_00774 at 792.389 kb on - strand, within MPMX19_00774 at 792.389 kb on - strand, within MPMX19_00774 at 792.389 kb on - strand, within MPMX19_00774 at 792.389 kb on - strand, within MPMX19_00774 at 792.389 kb on - strand, within MPMX19_00774 at 792.389 kb on - strand, within MPMX19_00774 at 792.389 kb on - strand, within MPMX19_00774 at 792.389 kb on - strand, within MPMX19_00774 at 792.389 kb on - strand, within MPMX19_00774 at 792.389 kb on - strand, within MPMX19_00774 at 792.416 kb on + strand, within MPMX19_00774 at 792.416 kb on + strand, within MPMX19_00774 at 792.416 kb on + strand, within MPMX19_00774 at 792.417 kb on - strand, within MPMX19_00774 at 792.417 kb on - strand, within MPMX19_00774
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 790,342 + +0.3 790,343 - +0.5 790,512 + -1.9 790,512 + -1.7 790,512 + -0.9 790,512 + +0.1 790,512 + -1.0 790,513 - +0.1 790,513 - +0.7 790,531 + -0.3 790,542 + +0.1 790,542 + -0.3 790,543 - +0.1 790,590 - +1.1 790,622 + -1.8 790,622 + -1.1 790,622 + +0.1 790,622 + +0.1 790,622 + -1.8 790,622 + -2.4 790,622 + +1.3 790,623 - -0.7 790,623 - +0.3 790,623 - +0.3 790,623 - -3.5 790,623 - +0.1 790,624 + -2.0 790,624 + +0.1 790,624 + -0.3 790,624 + -1.2 790,625 - +0.1 790,625 - +0.2 790,625 - -1.7 790,625 - -0.3 790,625 - +0.7 790,625 - -0.3 790,625 - -0.6 790,625 - +1.4 790,625 - +1.1 790,625 - -0.9 790,667 + -0.7 790,668 - +0.1 790,668 - +0.3 790,668 - +0.7 790,679 - -0.7 790,752 - +0.7 790,979 - MPMX19_00772 0.68 -1.1 790,979 - MPMX19_00772 0.68 -0.1 790,979 - MPMX19_00772 0.68 +0.1 791,147 + -0.3 791,147 + -1.1 791,147 + -0.2 791,148 - +0.3 791,148 - -1.8 791,168 + -0.1 791,168 + +0.1 791,168 + +0.2 791,168 + -1.1 791,237 - +0.1 791,339 + MPMX19_00773 0.28 -1.5 791,339 + MPMX19_00773 0.28 -0.8 791,340 - MPMX19_00773 0.28 -0.9 791,340 - MPMX19_00773 0.28 +0.1 791,340 - MPMX19_00773 0.28 -1.3 791,340 - MPMX19_00773 0.28 -1.9 791,340 - MPMX19_00773 0.28 -1.2 791,340 - MPMX19_00773 0.28 -1.7 791,555 + MPMX19_00773 0.88 +1.3 791,555 + MPMX19_00773 0.88 +0.1 791,555 + MPMX19_00773 0.88 -0.7 791,556 - MPMX19_00773 0.88 -0.7 791,556 - MPMX19_00773 0.88 -1.8 791,606 + -1.3 791,606 + -0.7 791,606 + -0.3 791,606 + +0.3 791,606 + -0.7 791,606 + +0.3 791,606 + +0.1 791,606 + +0.7 791,606 + +0.5 791,606 + -1.8 791,607 - -0.1 791,607 - -0.3 791,607 - -0.1 791,607 - -0.5 791,607 - -0.1 791,607 - -0.9 791,607 - +0.2 791,607 - -1.0 791,607 - -0.7 791,607 - +1.1 791,607 - -0.7 791,607 - -1.8 791,607 - -1.9 791,607 - -0.7 791,607 - -0.2 791,607 - +1.5 791,607 - +0.4 791,607 - +0.1 791,626 + -0.8 791,626 + +1.3 791,626 + -0.3 791,626 + -1.3 791,626 + -1.3 791,627 - +0.4 791,627 - -1.6 791,627 - -0.4 791,797 + MPMX19_00774 0.11 -1.3 791,797 + MPMX19_00774 0.11 -1.1 791,798 - MPMX19_00774 0.11 -0.3 791,798 - MPMX19_00774 0.11 -2.1 791,798 - MPMX19_00774 0.11 -0.9 791,798 - MPMX19_00774 0.11 -1.7 791,798 - MPMX19_00774 0.11 -0.8 791,798 - MPMX19_00774 0.11 +0.7 791,798 - MPMX19_00774 0.11 -0.6 791,798 - MPMX19_00774 0.11 -0.7 791,798 - MPMX19_00774 0.11 -0.3 791,956 + MPMX19_00774 0.20 -0.9 791,956 + MPMX19_00774 0.20 -0.3 791,957 - MPMX19_00774 0.20 -0.9 791,957 - MPMX19_00774 0.20 +0.9 791,965 + MPMX19_00774 0.21 -1.8 791,965 + MPMX19_00774 0.21 +0.1 791,966 - MPMX19_00774 0.21 -0.1 791,966 - MPMX19_00774 0.21 -1.5 792,034 + MPMX19_00774 0.25 -0.1 792,166 + MPMX19_00774 0.33 +0.7 792,166 + MPMX19_00774 0.33 -0.1 792,166 + MPMX19_00774 0.33 -0.3 792,166 + MPMX19_00774 0.33 +1.7 792,166 + MPMX19_00774 0.33 +0.3 792,166 + MPMX19_00774 0.33 -2.0 792,166 + MPMX19_00774 0.33 -0.3 792,166 + MPMX19_00774 0.33 -0.7 792,166 + MPMX19_00774 0.33 -0.3 792,166 + MPMX19_00774 0.33 +1.7 792,167 - MPMX19_00774 0.33 +3.3 792,167 - MPMX19_00774 0.33 -0.9 792,167 - MPMX19_00774 0.33 +0.1 792,167 - MPMX19_00774 0.33 -1.1 792,167 - MPMX19_00774 0.33 -0.9 792,167 - MPMX19_00774 0.33 -0.7 792,167 - MPMX19_00774 0.33 -0.7 792,167 - MPMX19_00774 0.33 -0.7 792,167 - MPMX19_00774 0.33 +0.7 792,388 + MPMX19_00774 0.47 -0.7 792,388 + MPMX19_00774 0.47 -1.9 792,388 + MPMX19_00774 0.47 -0.5 792,388 + MPMX19_00774 0.47 -1.5 792,388 + MPMX19_00774 0.47 -0.5 792,388 + MPMX19_00774 0.47 -0.1 792,388 + MPMX19_00774 0.47 +2.1 792,389 - MPMX19_00774 0.47 +0.1 792,389 - MPMX19_00774 0.47 +0.1 792,389 - MPMX19_00774 0.47 -1.1 792,389 - MPMX19_00774 0.47 -0.9 792,389 - MPMX19_00774 0.47 -2.9 792,389 - MPMX19_00774 0.47 -1.1 792,389 - MPMX19_00774 0.47 +0.9 792,389 - MPMX19_00774 0.47 +1.7 792,389 - MPMX19_00774 0.47 +0.3 792,389 - MPMX19_00774 0.47 +0.1 792,389 - MPMX19_00774 0.47 -0.9 792,389 - MPMX19_00774 0.47 +0.7 792,416 + MPMX19_00774 0.48 +0.3 792,416 + MPMX19_00774 0.48 -0.1 792,416 + MPMX19_00774 0.48 +0.3 792,417 - MPMX19_00774 0.48 -1.7 792,417 - MPMX19_00774 0.48 -0.3
Or see this region's nucleotide sequence