Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00760 and MPMX19_00761 are separated by 200 nucleotides MPMX19_00761 and MPMX19_00762 are separated by 145 nucleotides MPMX19_00762 and MPMX19_00763 are separated by 94 nucleotides
MPMX19_00760: MPMX19_00760 - DNA primase, at 774,955 to 776,862
_00760
MPMX19_00761: MPMX19_00761 - RNA polymerase sigma factor RpoD, at 777,063 to 779,096
_00761
MPMX19_00762: MPMX19_00762 - tRNA-Met, at 779,242 to 779,317
_00762
MPMX19_00763: MPMX19_00763 - hypothetical protein, at 779,412 to 781,043
_00763
Position (kb) 777
778
779
780 Strain fitness (log2 ratio) -2
-1
0
1
2 at 776.877 kb on + strand at 776.877 kb on + strand at 776.877 kb on + strand at 776.877 kb on + strand at 776.877 kb on + strand at 776.877 kb on + strand at 776.877 kb on + strand at 776.877 kb on + strand at 776.877 kb on + strand at 776.877 kb on + strand at 776.877 kb on + strand at 776.908 kb on + strand at 776.908 kb on + strand at 776.908 kb on + strand at 776.908 kb on + strand at 776.908 kb on + strand at 776.964 kb on + strand at 776.964 kb on + strand at 776.964 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 776.968 kb on + strand at 779.589 kb on + strand, within MPMX19_00763 at 779.589 kb on + strand, within MPMX19_00763 at 779.589 kb on + strand, within MPMX19_00763 at 779.589 kb on + strand, within MPMX19_00763 at 779.589 kb on + strand, within MPMX19_00763 at 779.590 kb on - strand, within MPMX19_00763 at 779.590 kb on - strand, within MPMX19_00763 at 779.590 kb on - strand, within MPMX19_00763 at 779.590 kb on - strand, within MPMX19_00763 at 779.755 kb on - strand, within MPMX19_00763
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 776,877 + +0.5 776,877 + +0.5 776,877 + +0.7 776,877 + -0.9 776,877 + +0.3 776,877 + -0.6 776,877 + -0.3 776,877 + +0.3 776,877 + -0.3 776,877 + -0.6 776,877 + -1.6 776,908 + +1.1 776,908 + -0.6 776,908 + -0.6 776,908 + -0.3 776,908 + +0.4 776,964 + +0.2 776,964 + -1.1 776,964 + -1.9 776,968 + -0.1 776,968 + -0.6 776,968 + +0.1 776,968 + -2.2 776,968 + -0.8 776,968 + -0.1 776,968 + +0.4 776,968 + +1.3 776,968 + -1.6 776,968 + -0.5 776,968 + -0.6 776,968 + +0.4 776,968 + +1.4 776,968 + -0.9 776,968 + +0.3 776,968 + +0.7 776,968 + +2.0 776,968 + +0.7 776,968 + -1.1 776,968 + -0.1 776,968 + -0.6 776,968 + -0.6 776,968 + +1.3 776,968 + -0.1 776,968 + +1.2 776,968 + +0.3 776,968 + -2.0 776,968 + +1.3 776,968 + +0.4 776,968 + +0.7 776,968 + -0.6 776,968 + -1.1 776,968 + -1.1 776,968 + +0.9 776,968 + -0.2 776,968 + +0.7 776,968 + -1.8 776,968 + -1.8 776,968 + -0.1 776,968 + +0.4 776,968 + +1.1 776,968 + +0.7 776,968 + -0.9 776,968 + -0.4 776,968 + -0.6 776,968 + +0.0 776,968 + -1.6 776,968 + -2.4 776,968 + -0.9 776,968 + -0.6 776,968 + -0.9 776,968 + +0.1 776,968 + -0.5 776,968 + -1.1 776,968 + +0.4 776,968 + +0.7 776,968 + +0.1 776,968 + -0.1 776,968 + -0.7 779,589 + MPMX19_00763 0.11 -0.6 779,589 + MPMX19_00763 0.11 +0.3 779,589 + MPMX19_00763 0.11 -0.3 779,589 + MPMX19_00763 0.11 -0.6 779,589 + MPMX19_00763 0.11 +0.6 779,590 - MPMX19_00763 0.11 -1.5 779,590 - MPMX19_00763 0.11 +1.0 779,590 - MPMX19_00763 0.11 -0.4 779,590 - MPMX19_00763 0.11 -0.4 779,755 - MPMX19_00763 0.21 -1.5
Or see this region's nucleotide sequence