Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00516 and MPMX19_00517 are separated by 111 nucleotides MPMX19_00517 and MPMX19_00518 are separated by 4 nucleotides MPMX19_00518 and MPMX19_00519 are separated by 151 nucleotides
MPMX19_00516: MPMX19_00516 - Acetate kinase, at 523,036 to 524,220
_00516
MPMX19_00517: MPMX19_00517 - HTH-type transcriptional activator AmpR, at 524,332 to 525,222
_00517
MPMX19_00518: MPMX19_00518 - hypothetical protein, at 525,227 to 525,478
_00518
MPMX19_00519: MPMX19_00519 - Glucose-6-phosphate isomerase, at 525,630 to 527,294
_00519
Position (kb) 524
525
526 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 523.591 kb on + strand, within MPMX19_00516 at 523.591 kb on + strand, within MPMX19_00516 at 523.591 kb on + strand, within MPMX19_00516 at 523.591 kb on + strand, within MPMX19_00516 at 523.591 kb on + strand, within MPMX19_00516 at 523.591 kb on + strand, within MPMX19_00516 at 523.591 kb on + strand, within MPMX19_00516 at 523.591 kb on + strand, within MPMX19_00516 at 523.592 kb on - strand, within MPMX19_00516 at 523.592 kb on - strand, within MPMX19_00516 at 523.592 kb on - strand, within MPMX19_00516 at 523.592 kb on - strand, within MPMX19_00516 at 523.592 kb on - strand, within MPMX19_00516 at 523.597 kb on + strand, within MPMX19_00516 at 523.597 kb on + strand, within MPMX19_00516 at 523.597 kb on + strand, within MPMX19_00516 at 523.597 kb on + strand, within MPMX19_00516 at 523.597 kb on + strand, within MPMX19_00516 at 523.597 kb on + strand, within MPMX19_00516 at 523.597 kb on + strand, within MPMX19_00516 at 523.597 kb on + strand, within MPMX19_00516 at 523.597 kb on + strand, within MPMX19_00516 at 523.597 kb on + strand, within MPMX19_00516 at 523.597 kb on + strand, within MPMX19_00516 at 523.597 kb on + strand, within MPMX19_00516 at 523.597 kb on + strand, within MPMX19_00516 at 523.597 kb on + strand, within MPMX19_00516 at 523.597 kb on + strand, within MPMX19_00516 at 523.597 kb on + strand, within MPMX19_00516 at 523.598 kb on - strand, within MPMX19_00516 at 523.598 kb on - strand, within MPMX19_00516 at 523.598 kb on - strand, within MPMX19_00516 at 523.598 kb on - strand, within MPMX19_00516 at 523.598 kb on - strand, within MPMX19_00516 at 523.598 kb on - strand, within MPMX19_00516 at 523.598 kb on - strand, within MPMX19_00516 at 523.598 kb on - strand, within MPMX19_00516 at 523.598 kb on - strand, within MPMX19_00516 at 523.598 kb on - strand, within MPMX19_00516 at 523.598 kb on - strand, within MPMX19_00516 at 523.598 kb on - strand, within MPMX19_00516 at 523.598 kb on - strand, within MPMX19_00516 at 523.598 kb on - strand, within MPMX19_00516 at 523.598 kb on - strand, within MPMX19_00516 at 523.598 kb on - strand, within MPMX19_00516 at 523.598 kb on - strand, within MPMX19_00516 at 523.598 kb on - strand, within MPMX19_00516 at 523.598 kb on - strand, within MPMX19_00516 at 523.598 kb on - strand, within MPMX19_00516 at 523.598 kb on - strand, within MPMX19_00516 at 523.598 kb on - strand, within MPMX19_00516 at 523.792 kb on + strand, within MPMX19_00516 at 523.792 kb on + strand, within MPMX19_00516 at 523.792 kb on + strand, within MPMX19_00516 at 523.792 kb on + strand, within MPMX19_00516 at 523.792 kb on + strand, within MPMX19_00516 at 523.793 kb on - strand, within MPMX19_00516 at 523.793 kb on - strand, within MPMX19_00516 at 523.793 kb on - strand, within MPMX19_00516 at 523.793 kb on - strand, within MPMX19_00516 at 523.793 kb on - strand, within MPMX19_00516 at 523.793 kb on - strand, within MPMX19_00516 at 523.793 kb on - strand, within MPMX19_00516 at 523.793 kb on - strand, within MPMX19_00516 at 523.793 kb on - strand, within MPMX19_00516 at 523.793 kb on - strand, within MPMX19_00516 at 523.793 kb on - strand, within MPMX19_00516 at 523.793 kb on - strand, within MPMX19_00516 at 523.793 kb on - strand, within MPMX19_00516 at 523.793 kb on - strand, within MPMX19_00516 at 523.793 kb on - strand, within MPMX19_00516 at 523.793 kb on - strand, within MPMX19_00516 at 523.793 kb on - strand, within MPMX19_00516 at 523.840 kb on + strand, within MPMX19_00516 at 523.840 kb on + strand, within MPMX19_00516 at 523.840 kb on + strand, within MPMX19_00516 at 523.840 kb on + strand, within MPMX19_00516 at 523.840 kb on + strand, within MPMX19_00516 at 523.840 kb on + strand, within MPMX19_00516 at 523.841 kb on - strand, within MPMX19_00516 at 523.841 kb on - strand, within MPMX19_00516 at 523.841 kb on - strand, within MPMX19_00516 at 523.841 kb on - strand, within MPMX19_00516 at 523.841 kb on - strand, within MPMX19_00516 at 523.841 kb on - strand, within MPMX19_00516 at 523.841 kb on - strand, within MPMX19_00516 at 523.841 kb on - strand, within MPMX19_00516 at 523.841 kb on - strand, within MPMX19_00516 at 523.841 kb on - strand, within MPMX19_00516 at 523.841 kb on - strand, within MPMX19_00516 at 523.841 kb on - strand, within MPMX19_00516 at 523.841 kb on - strand, within MPMX19_00516 at 523.841 kb on - strand, within MPMX19_00516 at 523.841 kb on - strand, within MPMX19_00516 at 523.841 kb on - strand, within MPMX19_00516 at 524.152 kb on + strand at 524.152 kb on + strand at 524.152 kb on + strand at 524.152 kb on + strand at 524.152 kb on + strand at 524.152 kb on + strand at 524.152 kb on + strand at 524.152 kb on + strand at 524.152 kb on + strand at 524.152 kb on + strand at 524.152 kb on + strand at 524.152 kb on + strand at 524.152 kb on + strand at 524.152 kb on + strand at 524.152 kb on + strand at 524.152 kb on + strand at 524.152 kb on + strand at 524.152 kb on + strand at 524.153 kb on - strand at 524.153 kb on - strand at 524.153 kb on - strand at 524.153 kb on - strand at 524.292 kb on + strand at 524.292 kb on + strand at 524.292 kb on + strand at 524.292 kb on + strand at 524.292 kb on + strand at 524.292 kb on + strand at 524.292 kb on + strand at 524.292 kb on + strand at 524.292 kb on + strand at 524.292 kb on + strand at 524.292 kb on + strand at 524.292 kb on + strand at 524.293 kb on - strand at 524.293 kb on - strand at 524.293 kb on - strand at 524.293 kb on - strand at 524.293 kb on - strand at 524.344 kb on + strand at 524.344 kb on + strand at 524.344 kb on + strand at 524.344 kb on + strand at 524.758 kb on + strand, within MPMX19_00517 at 524.758 kb on + strand, within MPMX19_00517 at 524.758 kb on + strand, within MPMX19_00517 at 524.758 kb on + strand, within MPMX19_00517 at 524.758 kb on + strand, within MPMX19_00517 at 524.758 kb on + strand, within MPMX19_00517 at 524.758 kb on + strand, within MPMX19_00517 at 524.758 kb on + strand, within MPMX19_00517 at 524.758 kb on + strand, within MPMX19_00517 at 524.759 kb on - strand, within MPMX19_00517 at 524.759 kb on - strand, within MPMX19_00517 at 524.905 kb on + strand, within MPMX19_00517 at 524.906 kb on - strand, within MPMX19_00517 at 525.124 kb on + strand, within MPMX19_00517 at 525.124 kb on + strand, within MPMX19_00517 at 525.124 kb on + strand, within MPMX19_00517 at 525.125 kb on - strand, within MPMX19_00517 at 525.125 kb on - strand, within MPMX19_00517 at 525.125 kb on - strand, within MPMX19_00517 at 525.125 kb on - strand, within MPMX19_00517 at 525.444 kb on + strand, within MPMX19_00518 at 525.444 kb on + strand, within MPMX19_00518 at 525.444 kb on + strand, within MPMX19_00518 at 525.444 kb on + strand, within MPMX19_00518 at 525.444 kb on + strand, within MPMX19_00518 at 525.444 kb on + strand, within MPMX19_00518 at 525.444 kb on + strand, within MPMX19_00518 at 525.444 kb on + strand, within MPMX19_00518 at 525.445 kb on - strand, within MPMX19_00518 at 525.445 kb on - strand, within MPMX19_00518 at 525.445 kb on - strand, within MPMX19_00518 at 525.445 kb on - strand, within MPMX19_00518 at 525.445 kb on - strand, within MPMX19_00518 at 525.445 kb on - strand, within MPMX19_00518 at 525.445 kb on - strand, within MPMX19_00518 at 525.445 kb on - strand, within MPMX19_00518 at 525.464 kb on + strand at 525.464 kb on + strand at 525.464 kb on + strand at 525.465 kb on - strand at 525.593 kb on + strand at 525.593 kb on + strand at 525.593 kb on + strand at 525.593 kb on + strand at 525.594 kb on - strand at 525.594 kb on - strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.599 kb on + strand at 525.600 kb on - strand at 525.600 kb on - strand at 525.600 kb on - strand at 525.600 kb on - strand at 525.600 kb on - strand at 525.600 kb on - strand at 525.605 kb on + strand at 525.605 kb on + strand at 525.605 kb on + strand at 525.606 kb on - strand at 525.631 kb on + strand at 525.631 kb on + strand at 525.631 kb on + strand at 525.632 kb on - strand at 525.632 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 523,591 + MPMX19_00516 0.47 +0.6 523,591 + MPMX19_00516 0.47 +2.1 523,591 + MPMX19_00516 0.47 -1.7 523,591 + MPMX19_00516 0.47 +0.4 523,591 + MPMX19_00516 0.47 +1.2 523,591 + MPMX19_00516 0.47 +0.0 523,591 + MPMX19_00516 0.47 -1.4 523,591 + MPMX19_00516 0.47 -0.9 523,592 - MPMX19_00516 0.47 -0.7 523,592 - MPMX19_00516 0.47 +1.3 523,592 - MPMX19_00516 0.47 -1.8 523,592 - MPMX19_00516 0.47 -0.2 523,592 - MPMX19_00516 0.47 -0.2 523,597 + MPMX19_00516 0.47 +0.0 523,597 + MPMX19_00516 0.47 -0.7 523,597 + MPMX19_00516 0.47 -1.2 523,597 + MPMX19_00516 0.47 -1.2 523,597 + MPMX19_00516 0.47 +0.0 523,597 + MPMX19_00516 0.47 +2.2 523,597 + MPMX19_00516 0.47 -0.4 523,597 + MPMX19_00516 0.47 +0.0 523,597 + MPMX19_00516 0.47 +1.3 523,597 + MPMX19_00516 0.47 +0.8 523,597 + MPMX19_00516 0.47 -0.4 523,597 + MPMX19_00516 0.47 +0.0 523,597 + MPMX19_00516 0.47 +0.0 523,597 + MPMX19_00516 0.47 -2.0 523,597 + MPMX19_00516 0.47 -1.2 523,597 + MPMX19_00516 0.47 +0.6 523,598 - MPMX19_00516 0.47 -1.6 523,598 - MPMX19_00516 0.47 +0.6 523,598 - MPMX19_00516 0.47 -1.0 523,598 - MPMX19_00516 0.47 -1.2 523,598 - MPMX19_00516 0.47 -0.7 523,598 - MPMX19_00516 0.47 -1.8 523,598 - MPMX19_00516 0.47 -0.3 523,598 - MPMX19_00516 0.47 +0.0 523,598 - MPMX19_00516 0.47 -1.2 523,598 - MPMX19_00516 0.47 -0.4 523,598 - MPMX19_00516 0.47 -0.7 523,598 - MPMX19_00516 0.47 -0.7 523,598 - MPMX19_00516 0.47 -0.8 523,598 - MPMX19_00516 0.47 -1.6 523,598 - MPMX19_00516 0.47 -0.3 523,598 - MPMX19_00516 0.47 +1.6 523,598 - MPMX19_00516 0.47 -0.4 523,598 - MPMX19_00516 0.47 +1.6 523,598 - MPMX19_00516 0.47 +0.9 523,598 - MPMX19_00516 0.47 +3.6 523,598 - MPMX19_00516 0.47 -0.2 523,598 - MPMX19_00516 0.47 +0.3 523,792 + MPMX19_00516 0.64 +0.6 523,792 + MPMX19_00516 0.64 +0.6 523,792 + MPMX19_00516 0.64 -1.7 523,792 + MPMX19_00516 0.64 +0.6 523,792 + MPMX19_00516 0.64 +0.2 523,793 - MPMX19_00516 0.64 +0.6 523,793 - MPMX19_00516 0.64 +1.6 523,793 - MPMX19_00516 0.64 -0.7 523,793 - MPMX19_00516 0.64 +1.6 523,793 - MPMX19_00516 0.64 -0.4 523,793 - MPMX19_00516 0.64 -0.4 523,793 - MPMX19_00516 0.64 +0.0 523,793 - MPMX19_00516 0.64 +0.9 523,793 - MPMX19_00516 0.64 -1.8 523,793 - MPMX19_00516 0.64 +0.0 523,793 - MPMX19_00516 0.64 -2.1 523,793 - MPMX19_00516 0.64 +1.6 523,793 - MPMX19_00516 0.64 +0.4 523,793 - MPMX19_00516 0.64 -1.0 523,793 - MPMX19_00516 0.64 +0.8 523,793 - MPMX19_00516 0.64 +0.2 523,793 - MPMX19_00516 0.64 -0.7 523,840 + MPMX19_00516 0.68 +1.6 523,840 + MPMX19_00516 0.68 +0.6 523,840 + MPMX19_00516 0.68 +0.6 523,840 + MPMX19_00516 0.68 -0.4 523,840 + MPMX19_00516 0.68 +0.3 523,840 + MPMX19_00516 0.68 +0.8 523,841 - MPMX19_00516 0.68 +1.9 523,841 - MPMX19_00516 0.68 +1.6 523,841 - MPMX19_00516 0.68 +0.0 523,841 - MPMX19_00516 0.68 -0.8 523,841 - MPMX19_00516 0.68 -0.1 523,841 - MPMX19_00516 0.68 +1.0 523,841 - MPMX19_00516 0.68 +0.3 523,841 - MPMX19_00516 0.68 -1.7 523,841 - MPMX19_00516 0.68 +0.6 523,841 - MPMX19_00516 0.68 +0.0 523,841 - MPMX19_00516 0.68 +0.5 523,841 - MPMX19_00516 0.68 +0.6 523,841 - MPMX19_00516 0.68 +1.0 523,841 - MPMX19_00516 0.68 -0.2 523,841 - MPMX19_00516 0.68 +0.0 523,841 - MPMX19_00516 0.68 +0.0 524,152 + +0.0 524,152 + +2.2 524,152 + +0.6 524,152 + +0.4 524,152 + -1.6 524,152 + -0.7 524,152 + +0.3 524,152 + +0.0 524,152 + -0.7 524,152 + -0.8 524,152 + -1.9 524,152 + +0.0 524,152 + +0.3 524,152 + -0.4 524,152 + -1.0 524,152 + -1.7 524,152 + +1.3 524,152 + +0.9 524,153 - +0.0 524,153 - +1.6 524,153 - +1.0 524,153 - +0.0 524,292 + -1.2 524,292 + +0.0 524,292 + -2.1 524,292 + +0.2 524,292 + -0.7 524,292 + +0.0 524,292 + +0.6 524,292 + -1.1 524,292 + -1.0 524,292 + -0.6 524,292 + +0.5 524,292 + -0.6 524,293 - +0.3 524,293 - -0.3 524,293 - +1.0 524,293 - -0.4 524,293 - -1.8 524,344 + -1.3 524,344 + -1.2 524,344 + +0.3 524,344 + +0.0 524,758 + MPMX19_00517 0.48 -0.7 524,758 + MPMX19_00517 0.48 -0.4 524,758 + MPMX19_00517 0.48 +0.0 524,758 + MPMX19_00517 0.48 +0.6 524,758 + MPMX19_00517 0.48 +0.0 524,758 + MPMX19_00517 0.48 +0.0 524,758 + MPMX19_00517 0.48 -0.4 524,758 + MPMX19_00517 0.48 -0.7 524,758 + MPMX19_00517 0.48 -0.7 524,759 - MPMX19_00517 0.48 -2.1 524,759 - MPMX19_00517 0.48 +0.6 524,905 + MPMX19_00517 0.64 -0.7 524,906 - MPMX19_00517 0.64 -1.4 525,124 + MPMX19_00517 0.89 +0.3 525,124 + MPMX19_00517 0.89 +0.6 525,124 + MPMX19_00517 0.89 +1.0 525,125 - MPMX19_00517 0.89 -1.4 525,125 - MPMX19_00517 0.89 -1.5 525,125 - MPMX19_00517 0.89 -1.0 525,125 - MPMX19_00517 0.89 -2.3 525,444 + MPMX19_00518 0.86 -0.7 525,444 + MPMX19_00518 0.86 +0.3 525,444 + MPMX19_00518 0.86 -0.4 525,444 + MPMX19_00518 0.86 -3.1 525,444 + MPMX19_00518 0.86 -0.2 525,444 + MPMX19_00518 0.86 -2.0 525,444 + MPMX19_00518 0.86 +0.0 525,444 + MPMX19_00518 0.86 +1.6 525,445 - MPMX19_00518 0.87 +1.6 525,445 - MPMX19_00518 0.87 +0.7 525,445 - MPMX19_00518 0.87 -0.7 525,445 - MPMX19_00518 0.87 -2.7 525,445 - MPMX19_00518 0.87 -0.4 525,445 - MPMX19_00518 0.87 +0.7 525,445 - MPMX19_00518 0.87 +0.0 525,445 - MPMX19_00518 0.87 -2.1 525,464 + +1.6 525,464 + -0.5 525,464 + +1.1 525,465 - -2.1 525,593 + -0.8 525,593 + -1.5 525,593 + +0.6 525,593 + +0.3 525,594 - -0.4 525,594 - -0.7 525,595 + -0.9 525,595 + -0.8 525,595 + -0.1 525,595 + +0.2 525,595 + -2.0 525,595 + -1.5 525,595 + +1.2 525,595 + -0.1 525,595 + +2.4 525,595 + -0.1 525,595 + -0.4 525,595 + +1.0 525,595 + +0.6 525,595 + -0.3 525,595 + -1.0 525,595 + -0.4 525,595 + +1.0 525,595 + +0.0 525,595 + -0.7 525,595 + +1.4 525,595 + -1.7 525,595 + -0.1 525,595 + +0.3 525,596 - -1.8 525,596 - -0.7 525,596 - -0.4 525,596 - -0.7 525,596 - +0.6 525,596 - -0.7 525,596 - -1.2 525,596 - -0.4 525,596 - +1.3 525,596 - +0.0 525,596 - +0.0 525,596 - +0.0 525,596 - -1.2 525,596 - -2.4 525,596 - -0.4 525,596 - +1.6 525,596 - +0.4 525,596 - -0.7 525,596 - -1.5 525,596 - -1.8 525,596 - +0.5 525,596 - +0.6 525,596 - -0.7 525,596 - -0.7 525,596 - -0.4 525,596 - -1.0 525,599 + -3.1 525,600 - -1.2 525,600 - +0.6 525,600 - +1.5 525,600 - -0.7 525,600 - +0.9 525,600 - -0.2 525,605 + -0.7 525,605 + -1.7 525,605 + -1.5 525,606 - +0.2 525,631 + -0.5 525,631 + +1.2 525,631 + -0.2 525,632 - +0.3 525,632 - +0.3
Or see this region's nucleotide sequence