Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00447 and MPMX19_00448 are separated by 345 nucleotides MPMX19_00448 and MPMX19_00449 are separated by 54 nucleotides MPMX19_00449 and MPMX19_00450 are separated by 48 nucleotides MPMX19_00450 and MPMX19_00451 are separated by 6 nucleotides
MPMX19_00447: MPMX19_00447 - hypothetical protein, at 446,368 to 447,141
_00447
MPMX19_00448: MPMX19_00448 - Phosphoribosylaminoimidazole-succinocarboxamide synthase, at 447,487 to 448,251
_00448
MPMX19_00449: MPMX19_00449 - Phosphoribosylformylglycinamidine synthase subunit PurS, at 448,306 to 448,548
_00449
MPMX19_00450: MPMX19_00450 - hypothetical protein, at 448,597 to 449,229
_00450
MPMX19_00451: MPMX19_00451 - Putative lipid kinase BmrU, at 449,236 to 450,207
_00451
Position (kb) 447
448
449 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 446.699 kb on - strand, within MPMX19_00447 at 446.863 kb on + strand, within MPMX19_00447 at 446.863 kb on + strand, within MPMX19_00447 at 446.864 kb on - strand, within MPMX19_00447 at 446.864 kb on - strand, within MPMX19_00447 at 446.864 kb on - strand, within MPMX19_00447 at 446.864 kb on - strand, within MPMX19_00447 at 446.864 kb on - strand, within MPMX19_00447 at 446.864 kb on - strand, within MPMX19_00447 at 446.864 kb on - strand, within MPMX19_00447 at 446.864 kb on - strand, within MPMX19_00447 at 446.864 kb on - strand, within MPMX19_00447 at 446.864 kb on - strand, within MPMX19_00447 at 447.121 kb on + strand at 447.121 kb on + strand at 447.121 kb on + strand at 447.121 kb on + strand at 447.121 kb on + strand at 447.121 kb on + strand at 447.121 kb on + strand at 447.121 kb on + strand at 447.122 kb on - strand at 447.122 kb on - strand at 447.122 kb on - strand at 447.122 kb on - strand at 447.122 kb on - strand at 447.122 kb on - strand at 447.206 kb on + strand at 447.207 kb on - strand at 447.207 kb on - strand at 447.207 kb on - strand at 447.217 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.415 kb on + strand at 447.416 kb on - strand at 447.416 kb on - strand at 447.416 kb on - strand at 447.416 kb on - strand at 447.416 kb on - strand at 447.416 kb on - strand at 447.416 kb on - strand at 447.417 kb on + strand at 447.417 kb on + strand at 447.417 kb on + strand at 447.465 kb on + strand at 447.465 kb on + strand at 447.465 kb on + strand at 447.465 kb on + strand at 447.465 kb on + strand at 447.465 kb on + strand at 447.465 kb on + strand at 447.465 kb on + strand at 447.465 kb on + strand at 447.465 kb on + strand at 447.465 kb on + strand at 447.465 kb on + strand at 447.466 kb on - strand at 447.466 kb on - strand at 447.469 kb on + strand at 447.469 kb on + strand at 447.469 kb on + strand at 447.469 kb on + strand at 447.469 kb on + strand at 447.469 kb on + strand at 447.469 kb on + strand at 447.469 kb on + strand at 447.469 kb on + strand at 447.469 kb on + strand at 447.469 kb on + strand at 447.469 kb on + strand at 447.470 kb on - strand at 447.470 kb on - strand at 447.470 kb on - strand at 447.508 kb on + strand at 447.508 kb on + strand at 447.508 kb on + strand at 447.508 kb on + strand at 447.508 kb on + strand at 447.508 kb on + strand at 447.508 kb on + strand at 447.508 kb on + strand at 447.509 kb on - strand at 447.527 kb on + strand at 447.527 kb on + strand at 447.527 kb on + strand at 447.527 kb on + strand at 447.527 kb on + strand at 447.527 kb on + strand at 447.527 kb on + strand at 447.527 kb on + strand at 447.527 kb on + strand at 447.527 kb on + strand at 447.527 kb on + strand at 447.527 kb on + strand at 447.527 kb on + strand at 447.528 kb on - strand at 447.565 kb on + strand, within MPMX19_00448 at 447.565 kb on + strand, within MPMX19_00448 at 447.565 kb on + strand, within MPMX19_00448 at 447.565 kb on + strand, within MPMX19_00448 at 447.566 kb on - strand, within MPMX19_00448 at 447.566 kb on - strand, within MPMX19_00448 at 447.652 kb on + strand, within MPMX19_00448 at 447.652 kb on + strand, within MPMX19_00448 at 447.652 kb on + strand, within MPMX19_00448 at 447.844 kb on + strand, within MPMX19_00448 at 447.844 kb on + strand, within MPMX19_00448 at 447.844 kb on + strand, within MPMX19_00448 at 447.844 kb on + strand, within MPMX19_00448 at 447.847 kb on + strand, within MPMX19_00448 at 447.847 kb on + strand, within MPMX19_00448 at 447.847 kb on + strand, within MPMX19_00448 at 447.847 kb on + strand, within MPMX19_00448 at 447.847 kb on + strand, within MPMX19_00448 at 447.847 kb on + strand, within MPMX19_00448 at 447.848 kb on - strand, within MPMX19_00448 at 447.850 kb on + strand, within MPMX19_00448 at 447.850 kb on + strand, within MPMX19_00448 at 447.850 kb on + strand, within MPMX19_00448 at 447.850 kb on + strand, within MPMX19_00448 at 447.850 kb on + strand, within MPMX19_00448 at 447.850 kb on + strand, within MPMX19_00448 at 447.850 kb on + strand, within MPMX19_00448 at 447.850 kb on + strand, within MPMX19_00448 at 447.850 kb on + strand, within MPMX19_00448 at 447.850 kb on + strand, within MPMX19_00448 at 447.850 kb on + strand, within MPMX19_00448 at 447.850 kb on + strand, within MPMX19_00448 at 447.850 kb on + strand, within MPMX19_00448 at 447.850 kb on + strand, within MPMX19_00448 at 447.850 kb on + strand, within MPMX19_00448 at 447.851 kb on - strand, within MPMX19_00448 at 447.851 kb on - strand, within MPMX19_00448 at 447.851 kb on - strand, within MPMX19_00448 at 447.967 kb on + strand, within MPMX19_00448 at 447.967 kb on + strand, within MPMX19_00448 at 447.967 kb on + strand, within MPMX19_00448 at 447.967 kb on + strand, within MPMX19_00448 at 447.967 kb on + strand, within MPMX19_00448 at 447.967 kb on + strand, within MPMX19_00448 at 447.967 kb on + strand, within MPMX19_00448 at 447.967 kb on + strand, within MPMX19_00448 at 447.967 kb on + strand, within MPMX19_00448 at 447.967 kb on + strand, within MPMX19_00448 at 447.967 kb on + strand, within MPMX19_00448 at 447.967 kb on + strand, within MPMX19_00448 at 447.968 kb on - strand, within MPMX19_00448 at 447.968 kb on - strand, within MPMX19_00448 at 447.968 kb on - strand, within MPMX19_00448 at 448.171 kb on + strand, within MPMX19_00448 at 448.171 kb on + strand, within MPMX19_00448 at 448.171 kb on + strand, within MPMX19_00448 at 448.171 kb on + strand, within MPMX19_00448 at 448.172 kb on - strand, within MPMX19_00448 at 448.287 kb on + strand at 448.525 kb on + strand at 448.525 kb on + strand at 448.526 kb on - strand at 448.526 kb on - strand at 448.526 kb on - strand at 448.865 kb on - strand, within MPMX19_00450 at 448.865 kb on - strand, within MPMX19_00450 at 448.996 kb on + strand, within MPMX19_00450 at 448.996 kb on + strand, within MPMX19_00450 at 448.996 kb on + strand, within MPMX19_00450 at 448.996 kb on + strand, within MPMX19_00450 at 448.996 kb on + strand, within MPMX19_00450 at 448.996 kb on + strand, within MPMX19_00450 at 448.996 kb on + strand, within MPMX19_00450 at 448.997 kb on - strand, within MPMX19_00450 at 448.997 kb on - strand, within MPMX19_00450 at 448.997 kb on - strand, within MPMX19_00450 at 448.997 kb on - strand, within MPMX19_00450 at 448.997 kb on - strand, within MPMX19_00450 at 448.997 kb on - strand, within MPMX19_00450 at 448.997 kb on - strand, within MPMX19_00450 at 448.997 kb on - strand, within MPMX19_00450 at 448.997 kb on - strand, within MPMX19_00450 at 448.997 kb on - strand, within MPMX19_00450 at 448.997 kb on - strand, within MPMX19_00450 at 448.997 kb on - strand, within MPMX19_00450 at 448.997 kb on - strand, within MPMX19_00450 at 448.997 kb on - strand, within MPMX19_00450 at 448.997 kb on - strand, within MPMX19_00450 at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.173 kb on + strand at 449.174 kb on - strand at 449.174 kb on - strand at 449.174 kb on - strand at 449.174 kb on - strand at 449.174 kb on - strand at 449.174 kb on - strand at 449.174 kb on - strand at 449.174 kb on - strand at 449.174 kb on - strand at 449.174 kb on - strand at 449.174 kb on - strand at 449.174 kb on - strand at 449.174 kb on - strand at 449.174 kb on - strand at 449.174 kb on - strand at 449.174 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 446,699 - MPMX19_00447 0.43 +0.6 446,863 + MPMX19_00447 0.64 +0.2 446,863 + MPMX19_00447 0.64 -0.7 446,864 - MPMX19_00447 0.64 -1.7 446,864 - MPMX19_00447 0.64 -1.4 446,864 - MPMX19_00447 0.64 -0.3 446,864 - MPMX19_00447 0.64 -1.0 446,864 - MPMX19_00447 0.64 +0.6 446,864 - MPMX19_00447 0.64 -0.7 446,864 - MPMX19_00447 0.64 -1.2 446,864 - MPMX19_00447 0.64 -0.7 446,864 - MPMX19_00447 0.64 +0.0 446,864 - MPMX19_00447 0.64 -1.5 447,121 + +0.0 447,121 + -1.8 447,121 + -1.2 447,121 + -0.4 447,121 + -0.1 447,121 + -0.1 447,121 + +0.8 447,121 + +0.0 447,122 - +0.0 447,122 - -2.0 447,122 - -0.2 447,122 - +0.3 447,122 - +0.9 447,122 - +1.0 447,206 + -0.8 447,207 - -0.4 447,207 - +0.0 447,207 - +0.0 447,217 + +0.0 447,415 + +0.0 447,415 + +0.6 447,415 + +2.2 447,415 + -1.0 447,415 + -0.6 447,415 + -1.2 447,415 + -0.7 447,415 + -0.4 447,415 + -0.4 447,415 + -1.4 447,415 + -0.7 447,415 + +0.0 447,415 + -0.4 447,415 + -0.2 447,415 + -1.0 447,415 + -1.7 447,415 + -0.4 447,415 + +0.0 447,415 + -1.0 447,415 + -0.8 447,415 + -1.0 447,415 + -0.7 447,415 + -0.4 447,415 + -0.7 447,415 + -1.0 447,415 + -1.7 447,415 + -1.5 447,415 + -0.2 447,415 + +0.0 447,415 + -1.0 447,415 + +0.0 447,416 - +1.9 447,416 - +1.2 447,416 - +1.6 447,416 - +0.6 447,416 - +0.0 447,416 - +1.6 447,416 - +1.3 447,417 + +0.3 447,417 + +0.7 447,417 + +0.6 447,465 + +1.6 447,465 + -1.0 447,465 + -1.1 447,465 + -1.1 447,465 + -0.1 447,465 + -1.0 447,465 + -0.7 447,465 + -0.4 447,465 + -0.5 447,465 + -0.0 447,465 + -0.3 447,465 + -1.0 447,466 - +4.2 447,466 - -0.4 447,469 + -0.1 447,469 + -1.5 447,469 + +1.6 447,469 + -0.7 447,469 + +0.3 447,469 + +0.0 447,469 + -0.3 447,469 + -0.5 447,469 + +0.0 447,469 + +0.6 447,469 + +0.3 447,469 + +2.6 447,470 - +1.6 447,470 - -0.4 447,470 - +0.4 447,508 + -0.4 447,508 + +0.3 447,508 + +0.0 447,508 + +0.0 447,508 + -0.3 447,508 + -0.4 447,508 + -1.0 447,508 + +0.2 447,509 - +2.2 447,527 + +0.3 447,527 + -1.0 447,527 + +0.6 447,527 + -1.0 447,527 + +0.6 447,527 + -0.7 447,527 + +0.0 447,527 + -0.4 447,527 + +1.6 447,527 + +0.0 447,527 + -1.0 447,527 + -0.7 447,527 + -0.4 447,528 - +1.6 447,565 + MPMX19_00448 0.10 -0.5 447,565 + MPMX19_00448 0.10 -0.4 447,565 + MPMX19_00448 0.10 -1.7 447,565 + MPMX19_00448 0.10 -2.0 447,566 - MPMX19_00448 0.10 +0.6 447,566 - MPMX19_00448 0.10 +0.0 447,652 + MPMX19_00448 0.22 -1.5 447,652 + MPMX19_00448 0.22 -0.8 447,652 + MPMX19_00448 0.22 -0.4 447,844 + MPMX19_00448 0.47 +0.0 447,844 + MPMX19_00448 0.47 -0.3 447,844 + MPMX19_00448 0.47 +0.6 447,844 + MPMX19_00448 0.47 -2.0 447,847 + MPMX19_00448 0.47 -1.0 447,847 + MPMX19_00448 0.47 +0.4 447,847 + MPMX19_00448 0.47 -1.7 447,847 + MPMX19_00448 0.47 +2.2 447,847 + MPMX19_00448 0.47 -0.4 447,847 + MPMX19_00448 0.47 +0.8 447,848 - MPMX19_00448 0.47 +3.2 447,850 + MPMX19_00448 0.47 +0.0 447,850 + MPMX19_00448 0.47 -2.2 447,850 + MPMX19_00448 0.47 -0.7 447,850 + MPMX19_00448 0.47 +1.6 447,850 + MPMX19_00448 0.47 -1.8 447,850 + MPMX19_00448 0.47 -0.6 447,850 + MPMX19_00448 0.47 -1.2 447,850 + MPMX19_00448 0.47 +0.0 447,850 + MPMX19_00448 0.47 +0.6 447,850 + MPMX19_00448 0.47 +0.3 447,850 + MPMX19_00448 0.47 -0.5 447,850 + MPMX19_00448 0.47 -0.7 447,850 + MPMX19_00448 0.47 -1.8 447,850 + MPMX19_00448 0.47 +0.0 447,850 + MPMX19_00448 0.47 -1.2 447,851 - MPMX19_00448 0.48 +0.0 447,851 - MPMX19_00448 0.48 +0.3 447,851 - MPMX19_00448 0.48 +1.6 447,967 + MPMX19_00448 0.63 -1.0 447,967 + MPMX19_00448 0.63 -0.2 447,967 + MPMX19_00448 0.63 +0.6 447,967 + MPMX19_00448 0.63 +0.3 447,967 + MPMX19_00448 0.63 +0.6 447,967 + MPMX19_00448 0.63 +0.0 447,967 + MPMX19_00448 0.63 +0.0 447,967 + MPMX19_00448 0.63 +1.0 447,967 + MPMX19_00448 0.63 -0.2 447,967 + MPMX19_00448 0.63 -1.4 447,967 + MPMX19_00448 0.63 -1.0 447,967 + MPMX19_00448 0.63 +1.2 447,968 - MPMX19_00448 0.63 +0.9 447,968 - MPMX19_00448 0.63 +2.9 447,968 - MPMX19_00448 0.63 +0.9 448,171 + MPMX19_00448 0.89 -0.7 448,171 + MPMX19_00448 0.89 -1.0 448,171 + MPMX19_00448 0.89 +0.3 448,171 + MPMX19_00448 0.89 +0.0 448,172 - MPMX19_00448 0.90 -1.2 448,287 + -0.7 448,525 + +0.6 448,525 + +2.1 448,526 - +0.6 448,526 - -0.7 448,526 - +0.0 448,865 - MPMX19_00450 0.42 -0.8 448,865 - MPMX19_00450 0.42 +0.5 448,996 + MPMX19_00450 0.63 +0.4 448,996 + MPMX19_00450 0.63 +2.2 448,996 + MPMX19_00450 0.63 +0.0 448,996 + MPMX19_00450 0.63 -0.4 448,996 + MPMX19_00450 0.63 -0.6 448,996 + MPMX19_00450 0.63 +0.6 448,996 + MPMX19_00450 0.63 +0.6 448,997 - MPMX19_00450 0.63 -0.0 448,997 - MPMX19_00450 0.63 +0.5 448,997 - MPMX19_00450 0.63 -0.4 448,997 - MPMX19_00450 0.63 -2.0 448,997 - MPMX19_00450 0.63 -1.8 448,997 - MPMX19_00450 0.63 -1.2 448,997 - MPMX19_00450 0.63 +0.0 448,997 - MPMX19_00450 0.63 -0.4 448,997 - MPMX19_00450 0.63 -0.2 448,997 - MPMX19_00450 0.63 +0.4 448,997 - MPMX19_00450 0.63 +1.6 448,997 - MPMX19_00450 0.63 -0.3 448,997 - MPMX19_00450 0.63 -0.1 448,997 - MPMX19_00450 0.63 -0.8 448,997 - MPMX19_00450 0.63 -0.7 449,173 + -1.2 449,173 + +1.4 449,173 + -1.0 449,173 + -0.4 449,173 + -0.7 449,173 + -1.4 449,173 + +0.6 449,173 + +0.0 449,173 + -2.2 449,173 + -1.0 449,173 + -1.5 449,173 + +0.2 449,173 + +0.3 449,173 + -0.7 449,173 + -1.5 449,173 + +0.6 449,173 + -1.6 449,173 + -1.7 449,173 + -0.6 449,173 + -1.4 449,173 + +2.0 449,173 + +1.6 449,173 + +0.6 449,173 + +0.4 449,173 + +0.0 449,173 + -1.4 449,173 + +0.2 449,173 + -0.7 449,174 - +0.8 449,174 - -0.7 449,174 - -1.1 449,174 - -0.4 449,174 - -1.8 449,174 - -0.1 449,174 - +1.6 449,174 - +0.6 449,174 - -0.4 449,174 - -0.1 449,174 - -1.6 449,174 - -1.2 449,174 - +0.0 449,174 - -1.0 449,174 - +0.3 449,174 - -1.2
Or see this region's nucleotide sequence