Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00418

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00416 and MPMX19_00417 are separated by 119 nucleotidesMPMX19_00417 and MPMX19_00418 are separated by 6 nucleotidesMPMX19_00418 and MPMX19_00419 are separated by 26 nucleotides MPMX19_00416: MPMX19_00416 - hypothetical protein, at 415,303 to 416,007 _00416 MPMX19_00417: MPMX19_00417 - hypothetical protein, at 416,127 to 416,984 _00417 MPMX19_00418: MPMX19_00418 - Putative glutamate--cysteine ligase 2, at 416,991 to 418,166 _00418 MPMX19_00419: MPMX19_00419 - Fe(3+) ions import ATP-binding protein FbpC 2, at 418,193 to 419,275 _00419 Position (kb) 416 417 418 419Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 416.054 kb on + strandat 416.054 kb on + strandat 416.054 kb on + strandat 416.055 kb on - strandat 416.055 kb on - strandat 416.055 kb on - strandat 416.074 kb on + strandat 416.074 kb on + strandat 416.075 kb on - strandat 416.075 kb on - strandat 416.075 kb on - strandat 416.116 kb on + strandat 416.116 kb on + strandat 416.116 kb on + strandat 416.117 kb on - strandat 416.117 kb on - strandat 416.117 kb on - strandat 416.117 kb on - strandat 416.126 kb on + strandat 416.126 kb on + strandat 416.126 kb on + strandat 416.126 kb on + strandat 416.126 kb on + strandat 416.126 kb on + strandat 416.127 kb on - strandat 416.127 kb on - strandat 416.127 kb on - strandat 416.127 kb on - strandat 416.127 kb on - strandat 416.127 kb on - strandat 416.127 kb on - strandat 416.127 kb on - strandat 416.127 kb on - strandat 416.127 kb on - strandat 416.127 kb on - strandat 416.127 kb on - strandat 416.127 kb on - strandat 416.352 kb on + strand, within MPMX19_00417at 416.352 kb on + strand, within MPMX19_00417at 416.353 kb on - strand, within MPMX19_00417at 416.353 kb on - strand, within MPMX19_00417at 416.353 kb on - strand, within MPMX19_00417at 416.353 kb on - strand, within MPMX19_00417at 416.353 kb on - strand, within MPMX19_00417at 416.353 kb on - strand, within MPMX19_00417at 416.568 kb on + strand, within MPMX19_00417at 416.568 kb on + strand, within MPMX19_00417at 416.568 kb on + strand, within MPMX19_00417at 416.568 kb on + strand, within MPMX19_00417at 416.568 kb on + strand, within MPMX19_00417at 416.568 kb on + strand, within MPMX19_00417at 416.569 kb on - strand, within MPMX19_00417at 416.569 kb on - strand, within MPMX19_00417at 416.569 kb on - strand, within MPMX19_00417at 416.569 kb on - strand, within MPMX19_00417at 416.569 kb on - strand, within MPMX19_00417at 416.569 kb on - strand, within MPMX19_00417at 416.569 kb on - strand, within MPMX19_00417at 416.781 kb on + strand, within MPMX19_00417at 416.781 kb on + strand, within MPMX19_00417at 416.781 kb on + strand, within MPMX19_00417at 416.781 kb on + strand, within MPMX19_00417at 416.782 kb on - strand, within MPMX19_00417at 416.782 kb on - strand, within MPMX19_00417at 416.782 kb on - strand, within MPMX19_00417at 416.782 kb on - strand, within MPMX19_00417at 416.782 kb on - strand, within MPMX19_00417at 416.970 kb on + strandat 416.971 kb on - strandat 417.042 kb on + strandat 417.042 kb on + strandat 417.042 kb on + strandat 417.042 kb on + strandat 417.042 kb on + strandat 417.042 kb on + strandat 417.042 kb on + strandat 417.042 kb on + strandat 417.042 kb on + strandat 417.042 kb on + strandat 417.042 kb on + strandat 417.042 kb on + strandat 417.043 kb on - strandat 417.043 kb on - strandat 417.043 kb on - strandat 417.043 kb on - strandat 417.043 kb on - strandat 417.043 kb on - strandat 417.043 kb on - strandat 417.043 kb on - strandat 417.043 kb on - strandat 417.043 kb on - strandat 417.043 kb on - strandat 417.043 kb on - strandat 417.043 kb on - strandat 417.043 kb on - strandat 417.043 kb on - strandat 417.043 kb on - strandat 417.043 kb on - strandat 417.043 kb on - strandat 417.330 kb on + strand, within MPMX19_00418at 417.330 kb on + strand, within MPMX19_00418at 417.330 kb on + strand, within MPMX19_00418at 417.330 kb on + strand, within MPMX19_00418at 417.330 kb on + strand, within MPMX19_00418at 417.330 kb on + strand, within MPMX19_00418at 417.331 kb on - strand, within MPMX19_00418at 417.331 kb on - strand, within MPMX19_00418at 417.331 kb on - strand, within MPMX19_00418at 417.331 kb on - strand, within MPMX19_00418at 417.331 kb on - strand, within MPMX19_00418at 417.331 kb on - strand, within MPMX19_00418at 417.331 kb on - strand, within MPMX19_00418at 417.331 kb on - strand, within MPMX19_00418at 417.331 kb on - strand, within MPMX19_00418at 417.331 kb on - strand, within MPMX19_00418at 417.450 kb on + strand, within MPMX19_00418at 417.450 kb on + strand, within MPMX19_00418at 417.450 kb on + strand, within MPMX19_00418at 417.450 kb on + strand, within MPMX19_00418at 417.451 kb on - strand, within MPMX19_00418at 417.451 kb on - strand, within MPMX19_00418at 417.451 kb on - strand, within MPMX19_00418at 417.525 kb on + strand, within MPMX19_00418at 417.526 kb on - strand, within MPMX19_00418at 417.585 kb on + strand, within MPMX19_00418at 417.585 kb on + strand, within MPMX19_00418at 417.585 kb on + strand, within MPMX19_00418at 417.585 kb on + strand, within MPMX19_00418at 417.585 kb on + strand, within MPMX19_00418at 417.585 kb on + strand, within MPMX19_00418at 417.585 kb on + strand, within MPMX19_00418at 417.585 kb on + strand, within MPMX19_00418at 417.585 kb on + strand, within MPMX19_00418at 417.585 kb on + strand, within MPMX19_00418at 417.585 kb on + strand, within MPMX19_00418at 417.585 kb on + strand, within MPMX19_00418at 417.585 kb on + strand, within MPMX19_00418at 417.585 kb on + strand, within MPMX19_00418at 417.585 kb on + strand, within MPMX19_00418at 417.585 kb on + strand, within MPMX19_00418at 417.585 kb on + strand, within MPMX19_00418at 417.585 kb on + strand, within MPMX19_00418at 417.585 kb on + strand, within MPMX19_00418at 417.585 kb on + strand, within MPMX19_00418at 417.585 kb on + strand, within MPMX19_00418at 417.585 kb on + strand, within MPMX19_00418at 417.585 kb on + strand, within MPMX19_00418at 417.585 kb on + strand, within MPMX19_00418at 417.586 kb on - strand, within MPMX19_00418at 417.586 kb on - strand, within MPMX19_00418at 417.586 kb on - strand, within MPMX19_00418at 417.586 kb on - strand, within MPMX19_00418at 417.586 kb on - strand, within MPMX19_00418at 417.586 kb on - strand, within MPMX19_00418at 417.586 kb on - strand, within MPMX19_00418at 417.586 kb on - strand, within MPMX19_00418at 417.594 kb on + strand, within MPMX19_00418at 417.594 kb on + strand, within MPMX19_00418at 417.595 kb on - strand, within MPMX19_00418at 417.753 kb on + strand, within MPMX19_00418at 417.753 kb on + strand, within MPMX19_00418at 417.753 kb on + strand, within MPMX19_00418at 417.754 kb on - strand, within MPMX19_00418at 417.754 kb on - strand, within MPMX19_00418at 417.754 kb on - strand, within MPMX19_00418at 417.754 kb on - strand, within MPMX19_00418at 417.754 kb on - strand, within MPMX19_00418at 417.754 kb on - strand, within MPMX19_00418at 417.754 kb on - strand, within MPMX19_00418at 417.813 kb on + strand, within MPMX19_00418at 417.813 kb on + strand, within MPMX19_00418at 417.813 kb on + strand, within MPMX19_00418at 417.813 kb on + strand, within MPMX19_00418at 417.813 kb on + strand, within MPMX19_00418at 417.813 kb on + strand, within MPMX19_00418at 417.813 kb on + strand, within MPMX19_00418at 417.813 kb on + strand, within MPMX19_00418at 417.813 kb on + strand, within MPMX19_00418at 417.814 kb on - strand, within MPMX19_00418at 417.814 kb on - strand, within MPMX19_00418at 417.814 kb on - strand, within MPMX19_00418at 417.814 kb on - strand, within MPMX19_00418at 417.858 kb on + strand, within MPMX19_00418at 417.858 kb on + strand, within MPMX19_00418at 417.858 kb on + strand, within MPMX19_00418at 417.858 kb on + strand, within MPMX19_00418at 417.859 kb on - strand, within MPMX19_00418at 417.910 kb on - strand, within MPMX19_00418at 417.910 kb on - strand, within MPMX19_00418at 417.910 kb on - strand, within MPMX19_00418at 417.910 kb on - strand, within MPMX19_00418at 417.910 kb on - strand, within MPMX19_00418at 417.910 kb on - strand, within MPMX19_00418at 417.910 kb on - strand, within MPMX19_00418at 417.999 kb on - strand, within MPMX19_00418at 418.605 kb on + strand, within MPMX19_00419at 418.605 kb on + strand, within MPMX19_00419at 418.606 kb on - strand, within MPMX19_00419at 419.028 kb on + strand, within MPMX19_00419at 419.028 kb on + strand, within MPMX19_00419at 419.028 kb on + strand, within MPMX19_00419at 419.028 kb on + strand, within MPMX19_00419at 419.028 kb on + strand, within MPMX19_00419at 419.028 kb on + strand, within MPMX19_00419at 419.028 kb on + strand, within MPMX19_00419at 419.028 kb on + strand, within MPMX19_00419at 419.028 kb on + strand, within MPMX19_00419at 419.028 kb on + strand, within MPMX19_00419at 419.028 kb on + strand, within MPMX19_00419at 419.028 kb on + strand, within MPMX19_00419at 419.028 kb on + strand, within MPMX19_00419at 419.028 kb on + strand, within MPMX19_00419at 419.029 kb on - strand, within MPMX19_00419at 419.029 kb on - strand, within MPMX19_00419at 419.029 kb on - strand, within MPMX19_00419at 419.029 kb on - strand, within MPMX19_00419at 419.029 kb on - strand, within MPMX19_00419at 419.029 kb on - strand, within MPMX19_00419at 419.029 kb on - strand, within MPMX19_00419at 419.029 kb on - strand, within MPMX19_00419at 419.029 kb on - strand, within MPMX19_00419at 419.029 kb on - strand, within MPMX19_00419at 419.029 kb on - strand, within MPMX19_00419at 419.029 kb on - strand, within MPMX19_00419at 419.029 kb on - strand, within MPMX19_00419at 419.029 kb on - strand, within MPMX19_00419at 419.029 kb on - strand, within MPMX19_00419at 419.029 kb on - strand, within MPMX19_00419at 419.029 kb on - strand, within MPMX19_00419at 419.029 kb on - strand, within MPMX19_00419

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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416,054 + -1.3
416,054 + +1.6
416,054 + +0.3
416,055 - +0.4
416,055 - -1.0
416,055 - +0.0
416,074 + +1.6
416,074 + -1.0
416,075 - -1.2
416,075 - +0.6
416,075 - +0.0
416,116 + +1.6
416,116 + -0.7
416,116 + -0.7
416,117 - +2.2
416,117 - -0.7
416,117 - -0.7
416,117 - +0.0
416,126 + -0.7
416,126 + +1.6
416,126 + +0.0
416,126 + -1.0
416,126 + -0.0
416,126 + -0.4
416,127 - +0.9
416,127 - -0.4
416,127 - -0.4
416,127 - +0.0
416,127 - -0.1
416,127 - -0.2
416,127 - -0.7
416,127 - -0.2
416,127 - -0.7
416,127 - +1.0
416,127 - -2.3
416,127 - +0.0
416,127 - -0.2
416,352 + MPMX19_00417 0.26 +1.0
416,352 + MPMX19_00417 0.26 -1.1
416,353 - MPMX19_00417 0.26 -1.0
416,353 - MPMX19_00417 0.26 -1.0
416,353 - MPMX19_00417 0.26 +1.6
416,353 - MPMX19_00417 0.26 +0.6
416,353 - MPMX19_00417 0.26 +0.0
416,353 - MPMX19_00417 0.26 +0.3
416,568 + MPMX19_00417 0.51 +0.3
416,568 + MPMX19_00417 0.51 -0.4
416,568 + MPMX19_00417 0.51 -1.4
416,568 + MPMX19_00417 0.51 -0.4
416,568 + MPMX19_00417 0.51 +0.3
416,568 + MPMX19_00417 0.51 -0.4
416,569 - MPMX19_00417 0.52 -0.9
416,569 - MPMX19_00417 0.52 -1.2
416,569 - MPMX19_00417 0.52 -0.7
416,569 - MPMX19_00417 0.52 +1.6
416,569 - MPMX19_00417 0.52 -0.6
416,569 - MPMX19_00417 0.52 +0.0
416,569 - MPMX19_00417 0.52 +1.2
416,781 + MPMX19_00417 0.76 +0.6
416,781 + MPMX19_00417 0.76 -1.7
416,781 + MPMX19_00417 0.76 +1.1
416,781 + MPMX19_00417 0.76 -0.8
416,782 - MPMX19_00417 0.76 +0.0
416,782 - MPMX19_00417 0.76 -1.0
416,782 - MPMX19_00417 0.76 -2.2
416,782 - MPMX19_00417 0.76 +1.0
416,782 - MPMX19_00417 0.76 +0.0
416,970 + -2.3
416,971 - -0.4
417,042 + +0.0
417,042 + -0.8
417,042 + +0.2
417,042 + +0.6
417,042 + -0.2
417,042 + +0.6
417,042 + -0.4
417,042 + -0.4
417,042 + -1.2
417,042 + -2.2
417,042 + -2.4
417,042 + -0.4
417,043 - -0.5
417,043 - +0.0
417,043 - -0.8
417,043 - +0.0
417,043 - -0.1
417,043 - +0.6
417,043 - +0.0
417,043 - -2.5
417,043 - -0.5
417,043 - +0.4
417,043 - -1.1
417,043 - +0.0
417,043 - +0.4
417,043 - -0.4
417,043 - +1.2
417,043 - -1.4
417,043 - +0.1
417,043 - +0.3
417,330 + MPMX19_00418 0.29 +0.6
417,330 + MPMX19_00418 0.29 -1.0
417,330 + MPMX19_00418 0.29 +0.1
417,330 + MPMX19_00418 0.29 -1.5
417,330 + MPMX19_00418 0.29 +1.2
417,330 + MPMX19_00418 0.29 +0.0
417,331 - MPMX19_00418 0.29 +0.6
417,331 - MPMX19_00418 0.29 -0.9
417,331 - MPMX19_00418 0.29 -1.8
417,331 - MPMX19_00418 0.29 +2.8
417,331 - MPMX19_00418 0.29 -0.4
417,331 - MPMX19_00418 0.29 -0.4
417,331 - MPMX19_00418 0.29 +0.0
417,331 - MPMX19_00418 0.29 -1.2
417,331 - MPMX19_00418 0.29 -0.7
417,331 - MPMX19_00418 0.29 -0.7
417,450 + MPMX19_00418 0.39 -1.9
417,450 + MPMX19_00418 0.39 +0.6
417,450 + MPMX19_00418 0.39 -0.4
417,450 + MPMX19_00418 0.39 -1.3
417,451 - MPMX19_00418 0.39 -1.1
417,451 - MPMX19_00418 0.39 -0.4
417,451 - MPMX19_00418 0.39 -0.7
417,525 + MPMX19_00418 0.45 +0.0
417,526 - MPMX19_00418 0.45 +0.4
417,585 + MPMX19_00418 0.51 +0.9
417,585 + MPMX19_00418 0.51 -1.2
417,585 + MPMX19_00418 0.51 +1.0
417,585 + MPMX19_00418 0.51 -1.4
417,585 + MPMX19_00418 0.51 -1.7
417,585 + MPMX19_00418 0.51 -1.2
417,585 + MPMX19_00418 0.51 -1.8
417,585 + MPMX19_00418 0.51 -1.2
417,585 + MPMX19_00418 0.51 -1.5
417,585 + MPMX19_00418 0.51 -0.3
417,585 + MPMX19_00418 0.51 -1.6
417,585 + MPMX19_00418 0.51 -0.4
417,585 + MPMX19_00418 0.51 +0.6
417,585 + MPMX19_00418 0.51 -0.5
417,585 + MPMX19_00418 0.51 +0.0
417,585 + MPMX19_00418 0.51 -0.7
417,585 + MPMX19_00418 0.51 -1.0
417,585 + MPMX19_00418 0.51 -1.4
417,585 + MPMX19_00418 0.51 +0.6
417,585 + MPMX19_00418 0.51 +0.6
417,585 + MPMX19_00418 0.51 -0.9
417,585 + MPMX19_00418 0.51 -0.7
417,585 + MPMX19_00418 0.51 -0.4
417,585 + MPMX19_00418 0.51 -1.8
417,586 - MPMX19_00418 0.51 -1.0
417,586 - MPMX19_00418 0.51 +0.0
417,586 - MPMX19_00418 0.51 +0.3
417,586 - MPMX19_00418 0.51 -1.2
417,586 - MPMX19_00418 0.51 +1.6
417,586 - MPMX19_00418 0.51 +0.9
417,586 - MPMX19_00418 0.51 -1.7
417,586 - MPMX19_00418 0.51 -0.1
417,594 + MPMX19_00418 0.51 -0.6
417,594 + MPMX19_00418 0.51 +1.2
417,595 - MPMX19_00418 0.51 -0.2
417,753 + MPMX19_00418 0.65 +0.2
417,753 + MPMX19_00418 0.65 -1.5
417,753 + MPMX19_00418 0.65 -0.4
417,754 - MPMX19_00418 0.65 -2.9
417,754 - MPMX19_00418 0.65 -0.2
417,754 - MPMX19_00418 0.65 +0.0
417,754 - MPMX19_00418 0.65 -1.3
417,754 - MPMX19_00418 0.65 -1.7
417,754 - MPMX19_00418 0.65 +1.6
417,754 - MPMX19_00418 0.65 -1.0
417,813 + MPMX19_00418 0.70 -0.4
417,813 + MPMX19_00418 0.70 -0.2
417,813 + MPMX19_00418 0.70 -0.7
417,813 + MPMX19_00418 0.70 -0.2
417,813 + MPMX19_00418 0.70 -0.7
417,813 + MPMX19_00418 0.70 +0.0
417,813 + MPMX19_00418 0.70 +0.0
417,813 + MPMX19_00418 0.70 -1.5
417,813 + MPMX19_00418 0.70 -1.0
417,814 - MPMX19_00418 0.70 -0.7
417,814 - MPMX19_00418 0.70 +0.9
417,814 - MPMX19_00418 0.70 +0.3
417,814 - MPMX19_00418 0.70 -0.8
417,858 + MPMX19_00418 0.74 +0.2
417,858 + MPMX19_00418 0.74 -1.2
417,858 + MPMX19_00418 0.74 +0.2
417,858 + MPMX19_00418 0.74 -0.5
417,859 - MPMX19_00418 0.74 +0.6
417,910 - MPMX19_00418 0.78 -1.0
417,910 - MPMX19_00418 0.78 +1.6
417,910 - MPMX19_00418 0.78 -0.5
417,910 - MPMX19_00418 0.78 +0.6
417,910 - MPMX19_00418 0.78 +1.2
417,910 - MPMX19_00418 0.78 -1.2
417,910 - MPMX19_00418 0.78 +0.0
417,999 - MPMX19_00418 0.86 -0.7
418,605 + MPMX19_00419 0.38 -0.7
418,605 + MPMX19_00419 0.38 +1.0
418,606 - MPMX19_00419 0.38 +0.6
419,028 + MPMX19_00419 0.77 -1.0
419,028 + MPMX19_00419 0.77 -0.1
419,028 + MPMX19_00419 0.77 -1.2
419,028 + MPMX19_00419 0.77 +0.4
419,028 + MPMX19_00419 0.77 +0.6
419,028 + MPMX19_00419 0.77 +0.3
419,028 + MPMX19_00419 0.77 -1.0
419,028 + MPMX19_00419 0.77 +0.6
419,028 + MPMX19_00419 0.77 +0.1
419,028 + MPMX19_00419 0.77 -0.7
419,028 + MPMX19_00419 0.77 -1.3
419,028 + MPMX19_00419 0.77 +0.1
419,028 + MPMX19_00419 0.77 +0.6
419,028 + MPMX19_00419 0.77 -0.4
419,029 - MPMX19_00419 0.77 +0.6
419,029 - MPMX19_00419 0.77 +0.0
419,029 - MPMX19_00419 0.77 -1.7
419,029 - MPMX19_00419 0.77 -0.8
419,029 - MPMX19_00419 0.77 +0.3
419,029 - MPMX19_00419 0.77 -0.4
419,029 - MPMX19_00419 0.77 -0.4
419,029 - MPMX19_00419 0.77 +0.6
419,029 - MPMX19_00419 0.77 +0.4
419,029 - MPMX19_00419 0.77 +0.0
419,029 - MPMX19_00419 0.77 +0.6
419,029 - MPMX19_00419 0.77 -0.7
419,029 - MPMX19_00419 0.77 -1.6
419,029 - MPMX19_00419 0.77 +0.6
419,029 - MPMX19_00419 0.77 +0.8
419,029 - MPMX19_00419 0.77 -0.4
419,029 - MPMX19_00419 0.77 -0.4
419,029 - MPMX19_00419 0.77 -0.8

Or see this region's nucleotide sequence