Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00144

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00142 and MPMX19_00143 overlap by 4 nucleotidesMPMX19_00143 and MPMX19_00144 are separated by 1 nucleotidesMPMX19_00144 and MPMX19_00145 are separated by 72 nucleotidesMPMX19_00145 and MPMX19_00146 overlap by 4 nucleotides MPMX19_00142: MPMX19_00142 - hypothetical protein, at 155,074 to 155,256 _00142 MPMX19_00143: MPMX19_00143 - Tyrosine recombinase XerC, at 155,253 to 156,251 _00143 MPMX19_00144: MPMX19_00144 - hypothetical protein, at 156,253 to 156,759 _00144 MPMX19_00145: MPMX19_00145 - DNA adenine methyltransferase YhdJ, at 156,832 to 157,623 _00145 MPMX19_00146: MPMX19_00146 - hypothetical protein, at 157,620 to 157,883 _00146 Position (kb) 156 157Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 155.364 kb on + strand, within MPMX19_00143at 155.364 kb on + strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.365 kb on - strand, within MPMX19_00143at 155.397 kb on + strand, within MPMX19_00143at 155.680 kb on - strand, within MPMX19_00143at 155.842 kb on - strand, within MPMX19_00143at 155.842 kb on - strand, within MPMX19_00143at 155.842 kb on - strand, within MPMX19_00143at 155.842 kb on - strand, within MPMX19_00143at 155.842 kb on - strand, within MPMX19_00143at 155.842 kb on - strand, within MPMX19_00143at 156.034 kb on - strand, within MPMX19_00143at 156.034 kb on - strand, within MPMX19_00143at 156.034 kb on - strand, within MPMX19_00143at 156.034 kb on - strand, within MPMX19_00143at 156.034 kb on - strand, within MPMX19_00143at 156.034 kb on - strand, within MPMX19_00143at 156.034 kb on - strand, within MPMX19_00143at 156.034 kb on - strand, within MPMX19_00143at 156.193 kb on - strandat 156.193 kb on - strandat 156.193 kb on - strandat 156.193 kb on - strandat 156.400 kb on + strand, within MPMX19_00144at 156.400 kb on + strand, within MPMX19_00144at 156.401 kb on - strand, within MPMX19_00144at 156.401 kb on - strand, within MPMX19_00144at 156.401 kb on - strand, within MPMX19_00144at 156.401 kb on - strand, within MPMX19_00144at 156.401 kb on - strand, within MPMX19_00144at 156.401 kb on - strand, within MPMX19_00144at 156.401 kb on - strand, within MPMX19_00144at 156.464 kb on - strand, within MPMX19_00144at 156.784 kb on + strandat 156.946 kb on + strand, within MPMX19_00145at 156.947 kb on - strand, within MPMX19_00145at 156.985 kb on + strand, within MPMX19_00145at 156.986 kb on - strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.567 kb on + strandat 157.568 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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155,364 + MPMX19_00143 0.11 +0.9
155,364 + MPMX19_00143 0.11 +0.9
155,365 - MPMX19_00143 0.11 +0.1
155,365 - MPMX19_00143 0.11 -1.1
155,365 - MPMX19_00143 0.11 +1.0
155,365 - MPMX19_00143 0.11 -0.1
155,365 - MPMX19_00143 0.11 -0.5
155,365 - MPMX19_00143 0.11 +1.2
155,365 - MPMX19_00143 0.11 +1.5
155,365 - MPMX19_00143 0.11 -0.5
155,365 - MPMX19_00143 0.11 +0.5
155,365 - MPMX19_00143 0.11 -0.3
155,365 - MPMX19_00143 0.11 -1.7
155,365 - MPMX19_00143 0.11 +0.5
155,365 - MPMX19_00143 0.11 -1.5
155,365 - MPMX19_00143 0.11 -0.7
155,365 - MPMX19_00143 0.11 +0.5
155,365 - MPMX19_00143 0.11 -2.6
155,365 - MPMX19_00143 0.11 -0.4
155,365 - MPMX19_00143 0.11 -2.9
155,397 + MPMX19_00143 0.14 +0.3
155,680 - MPMX19_00143 0.43 -0.5
155,842 - MPMX19_00143 0.59 -1.1
155,842 - MPMX19_00143 0.59 +0.8
155,842 - MPMX19_00143 0.59 +1.5
155,842 - MPMX19_00143 0.59 -1.3
155,842 - MPMX19_00143 0.59 -0.8
155,842 - MPMX19_00143 0.59 -2.2
156,034 - MPMX19_00143 0.78 -0.1
156,034 - MPMX19_00143 0.78 +0.5
156,034 - MPMX19_00143 0.78 +1.5
156,034 - MPMX19_00143 0.78 -1.8
156,034 - MPMX19_00143 0.78 +1.5
156,034 - MPMX19_00143 0.78 -1.5
156,034 - MPMX19_00143 0.78 +0.3
156,034 - MPMX19_00143 0.78 +0.7
156,193 - -1.3
156,193 - -1.9
156,193 - -0.3
156,193 - -1.2
156,400 + MPMX19_00144 0.29 -0.2
156,400 + MPMX19_00144 0.29 -0.1
156,401 - MPMX19_00144 0.29 -2.3
156,401 - MPMX19_00144 0.29 -0.6
156,401 - MPMX19_00144 0.29 +2.4
156,401 - MPMX19_00144 0.29 -0.1
156,401 - MPMX19_00144 0.29 -0.8
156,401 - MPMX19_00144 0.29 -0.8
156,401 - MPMX19_00144 0.29 -0.8
156,464 - MPMX19_00144 0.42 -0.7
156,784 + +1.6
156,946 + MPMX19_00145 0.14 +0.2
156,947 - MPMX19_00145 0.15 +0.5
156,985 + MPMX19_00145 0.19 -1.1
156,986 - MPMX19_00145 0.19 -1.3
157,276 + MPMX19_00145 0.56 -0.8
157,276 + MPMX19_00145 0.56 -0.5
157,276 + MPMX19_00145 0.56 -1.8
157,276 + MPMX19_00145 0.56 -0.6
157,276 + MPMX19_00145 0.56 -0.8
157,276 + MPMX19_00145 0.56 -2.5
157,276 + MPMX19_00145 0.56 -1.1
157,276 + MPMX19_00145 0.56 -0.7
157,276 + MPMX19_00145 0.56 +0.2
157,276 + MPMX19_00145 0.56 -1.3
157,276 + MPMX19_00145 0.56 +0.5
157,276 + MPMX19_00145 0.56 -2.0
157,276 + MPMX19_00145 0.56 -1.3
157,276 + MPMX19_00145 0.56 -0.1
157,277 - MPMX19_00145 0.56 -1.7
157,277 - MPMX19_00145 0.56 -1.7
157,277 - MPMX19_00145 0.56 +1.2
157,277 - MPMX19_00145 0.56 -1.5
157,277 - MPMX19_00145 0.56 +0.5
157,277 - MPMX19_00145 0.56 -0.5
157,277 - MPMX19_00145 0.56 -1.8
157,277 - MPMX19_00145 0.56 -1.1
157,277 - MPMX19_00145 0.56 +1.7
157,277 - MPMX19_00145 0.56 -0.8
157,277 - MPMX19_00145 0.56 -1.7
157,277 - MPMX19_00145 0.56 -1.5
157,277 - MPMX19_00145 0.56 -0.7
157,277 - MPMX19_00145 0.56 +0.2
157,277 - MPMX19_00145 0.56 -0.7
157,567 + +2.1
157,568 - -1.5

Or see this region's nucleotide sequence