Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00088 and MPMX19_00089 are separated by 158 nucleotides MPMX19_00089 and MPMX19_00090 are separated by 51 nucleotides
MPMX19_00088: MPMX19_00088 - HTH-type transcriptional regulator HdfR, at 95,120 to 96,082
_00088
MPMX19_00089: MPMX19_00089 - hypothetical protein, at 96,241 to 96,477
_00089
MPMX19_00090: MPMX19_00090 - L-asparaginase 1, at 96,529 to 97,617
_00090
Position (kb) 96
97 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 95.656 kb on - strand, within MPMX19_00088 at 95.727 kb on + strand, within MPMX19_00088 at 95.728 kb on - strand, within MPMX19_00088 at 95.728 kb on - strand, within MPMX19_00088 at 95.775 kb on + strand, within MPMX19_00088 at 95.775 kb on + strand, within MPMX19_00088 at 95.775 kb on + strand, within MPMX19_00088 at 95.775 kb on + strand, within MPMX19_00088 at 95.775 kb on + strand, within MPMX19_00088 at 95.776 kb on - strand, within MPMX19_00088 at 95.776 kb on - strand, within MPMX19_00088 at 95.871 kb on + strand, within MPMX19_00088 at 95.872 kb on - strand, within MPMX19_00088 at 95.872 kb on - strand, within MPMX19_00088 at 95.872 kb on - strand, within MPMX19_00088 at 95.872 kb on - strand, within MPMX19_00088 at 95.872 kb on - strand, within MPMX19_00088 at 95.872 kb on - strand, within MPMX19_00088 at 95.872 kb on - strand, within MPMX19_00088 at 95.872 kb on - strand, within MPMX19_00088 at 96.106 kb on + strand at 96.106 kb on + strand at 96.106 kb on + strand at 96.107 kb on - strand at 96.107 kb on - strand at 96.107 kb on - strand at 96.107 kb on - strand at 96.107 kb on - strand at 96.107 kb on - strand at 96.107 kb on - strand at 96.168 kb on + strand at 96.168 kb on + strand at 96.168 kb on + strand at 96.168 kb on + strand at 96.168 kb on + strand at 96.169 kb on - strand at 96.175 kb on + strand at 96.175 kb on + strand at 96.175 kb on + strand at 96.349 kb on + strand, within MPMX19_00089 at 96.349 kb on + strand, within MPMX19_00089 at 96.349 kb on + strand, within MPMX19_00089 at 96.350 kb on - strand, within MPMX19_00089 at 96.350 kb on - strand, within MPMX19_00089 at 96.350 kb on - strand, within MPMX19_00089 at 96.350 kb on - strand, within MPMX19_00089 at 96.475 kb on + strand at 96.475 kb on + strand at 96.475 kb on + strand at 96.475 kb on + strand at 96.476 kb on - strand at 96.476 kb on - strand at 96.476 kb on - strand at 96.476 kb on - strand at 96.476 kb on - strand at 96.476 kb on - strand at 96.476 kb on - strand at 96.476 kb on - strand at 96.476 kb on - strand at 96.491 kb on + strand at 96.491 kb on + strand at 96.492 kb on - strand at 96.492 kb on - strand at 96.506 kb on - strand at 96.506 kb on - strand at 96.506 kb on - strand at 96.506 kb on - strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.550 kb on + strand at 96.550 kb on + strand at 96.550 kb on + strand at 96.550 kb on + strand at 96.550 kb on + strand at 96.550 kb on + strand at 96.550 kb on + strand at 96.550 kb on + strand at 96.550 kb on + strand at 96.551 kb on - strand at 96.551 kb on - strand at 96.551 kb on - strand at 96.551 kb on - strand at 96.551 kb on - strand at 96.673 kb on + strand, within MPMX19_00090 at 96.674 kb on - strand, within MPMX19_00090 at 96.778 kb on + strand, within MPMX19_00090 at 96.778 kb on + strand, within MPMX19_00090 at 96.779 kb on - strand, within MPMX19_00090 at 96.779 kb on - strand, within MPMX19_00090 at 96.779 kb on - strand, within MPMX19_00090 at 96.787 kb on + strand, within MPMX19_00090 at 96.787 kb on + strand, within MPMX19_00090 at 96.787 kb on + strand, within MPMX19_00090 at 96.787 kb on + strand, within MPMX19_00090 at 96.787 kb on + strand, within MPMX19_00090 at 96.787 kb on + strand, within MPMX19_00090 at 96.787 kb on + strand, within MPMX19_00090 at 96.787 kb on + strand, within MPMX19_00090 at 96.787 kb on + strand, within MPMX19_00090 at 96.788 kb on - strand, within MPMX19_00090 at 96.788 kb on - strand, within MPMX19_00090 at 96.788 kb on - strand, within MPMX19_00090 at 96.788 kb on - strand, within MPMX19_00090 at 96.788 kb on - strand, within MPMX19_00090 at 96.788 kb on - strand, within MPMX19_00090 at 96.788 kb on - strand, within MPMX19_00090 at 96.788 kb on - strand, within MPMX19_00090 at 96.788 kb on - strand, within MPMX19_00090 at 96.788 kb on - strand, within MPMX19_00090 at 96.788 kb on - strand, within MPMX19_00090 at 96.829 kb on + strand, within MPMX19_00090 at 96.829 kb on + strand, within MPMX19_00090 at 96.829 kb on + strand, within MPMX19_00090 at 96.829 kb on + strand, within MPMX19_00090 at 96.829 kb on + strand, within MPMX19_00090 at 96.829 kb on + strand, within MPMX19_00090 at 96.829 kb on + strand, within MPMX19_00090 at 96.829 kb on + strand, within MPMX19_00090 at 96.830 kb on - strand, within MPMX19_00090 at 96.830 kb on - strand, within MPMX19_00090 at 96.830 kb on - strand, within MPMX19_00090 at 96.830 kb on - strand, within MPMX19_00090 at 96.830 kb on - strand, within MPMX19_00090 at 96.830 kb on - strand, within MPMX19_00090 at 96.830 kb on - strand, within MPMX19_00090 at 96.830 kb on - strand, within MPMX19_00090 at 96.991 kb on + strand, within MPMX19_00090 at 96.991 kb on + strand, within MPMX19_00090 at 96.992 kb on - strand, within MPMX19_00090 at 96.992 kb on - strand, within MPMX19_00090 at 96.992 kb on - strand, within MPMX19_00090 at 96.992 kb on - strand, within MPMX19_00090 at 96.992 kb on - strand, within MPMX19_00090 at 97.193 kb on + strand, within MPMX19_00090 at 97.194 kb on - strand, within MPMX19_00090 at 97.194 kb on - strand, within MPMX19_00090 at 97.246 kb on + strand, within MPMX19_00090 at 97.246 kb on + strand, within MPMX19_00090 at 97.247 kb on - strand, within MPMX19_00090 at 97.247 kb on - strand, within MPMX19_00090 at 97.319 kb on + strand, within MPMX19_00090 at 97.319 kb on + strand, within MPMX19_00090 at 97.319 kb on + strand, within MPMX19_00090 at 97.319 kb on + strand, within MPMX19_00090 at 97.327 kb on + strand, within MPMX19_00090 at 97.327 kb on + strand, within MPMX19_00090 at 97.327 kb on + strand, within MPMX19_00090 at 97.328 kb on - strand, within MPMX19_00090 at 97.328 kb on - strand, within MPMX19_00090 at 97.328 kb on - strand, within MPMX19_00090 at 97.450 kb on + strand, within MPMX19_00090 at 97.450 kb on + strand, within MPMX19_00090 at 97.451 kb on - strand, within MPMX19_00090 at 97.451 kb on - strand, within MPMX19_00090 at 97.451 kb on - strand, within MPMX19_00090 at 97.451 kb on - strand, within MPMX19_00090 at 97.451 kb on - strand, within MPMX19_00090 at 97.451 kb on - strand, within MPMX19_00090 at 97.451 kb on - strand, within MPMX19_00090 at 97.451 kb on - strand, within MPMX19_00090
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 95,656 - MPMX19_00088 0.56 -0.8 95,727 + MPMX19_00088 0.63 -0.3 95,728 - MPMX19_00088 0.63 +0.2 95,728 - MPMX19_00088 0.63 +0.4 95,775 + MPMX19_00088 0.68 -0.1 95,775 + MPMX19_00088 0.68 +0.5 95,775 + MPMX19_00088 0.68 +0.8 95,775 + MPMX19_00088 0.68 -1.2 95,775 + MPMX19_00088 0.68 +0.8 95,776 - MPMX19_00088 0.68 +0.5 95,776 - MPMX19_00088 0.68 -1.3 95,871 + MPMX19_00088 0.78 +1.5 95,872 - MPMX19_00088 0.78 -1.5 95,872 - MPMX19_00088 0.78 -1.1 95,872 - MPMX19_00088 0.78 -2.1 95,872 - MPMX19_00088 0.78 -0.3 95,872 - MPMX19_00088 0.78 -1.7 95,872 - MPMX19_00088 0.78 -0.1 95,872 - MPMX19_00088 0.78 -0.4 95,872 - MPMX19_00088 0.78 -1.3 96,106 + +0.1 96,106 + -1.1 96,106 + +1.5 96,107 - -0.1 96,107 - +0.9 96,107 - -1.7 96,107 - -1.2 96,107 - -0.8 96,107 - -0.1 96,107 - -0.5 96,168 + +0.5 96,168 + +2.1 96,168 + -0.5 96,168 + -1.1 96,168 + -0.3 96,169 - -0.4 96,175 + -1.8 96,175 + +0.3 96,175 + -0.8 96,349 + MPMX19_00089 0.46 -0.3 96,349 + MPMX19_00089 0.46 -0.8 96,349 + MPMX19_00089 0.46 -0.8 96,350 - MPMX19_00089 0.46 -0.3 96,350 - MPMX19_00089 0.46 -0.8 96,350 - MPMX19_00089 0.46 -0.5 96,350 - MPMX19_00089 0.46 -0.8 96,475 + -0.4 96,475 + +1.2 96,475 + +0.5 96,475 + +0.5 96,476 - +1.5 96,476 - -1.9 96,476 - -0.9 96,476 - -0.5 96,476 - -0.8 96,476 - -0.7 96,476 - -0.7 96,476 - +1.2 96,476 - -1.1 96,491 + -0.5 96,491 + -0.8 96,492 - -0.8 96,492 - -0.3 96,506 - -0.1 96,506 - -0.8 96,506 - -2.2 96,506 - +1.5 96,509 + -0.5 96,509 + -0.5 96,509 + -0.1 96,509 + -1.1 96,509 + +0.3 96,509 + +1.1 96,509 + -1.9 96,509 + -1.1 96,509 + +0.2 96,509 + +0.3 96,509 + +1.0 96,509 + -1.5 96,509 + +0.5 96,509 + -1.5 96,509 + -1.5 96,509 + -0.1 96,509 + +1.1 96,509 + -0.8 96,509 + -0.8 96,509 + -1.2 96,509 + +1.8 96,509 + -1.4 96,509 + -1.1 96,509 + -0.1 96,510 - -0.8 96,510 - -2.1 96,510 - -1.5 96,510 - -0.4 96,510 - +0.2 96,510 - +0.7 96,510 - +0.5 96,510 - -0.5 96,510 - +3.1 96,510 - +2.8 96,510 - -0.8 96,510 - -0.4 96,510 - -0.9 96,510 - -0.8 96,510 - -0.1 96,510 - -1.9 96,510 - -0.1 96,510 - +1.1 96,510 - +0.7 96,510 - -0.3 96,510 - +2.8 96,510 - -0.8 96,510 - -0.5 96,510 - -0.3 96,510 - +0.1 96,510 - +0.8 96,510 - -2.4 96,541 + +0.5 96,541 + -1.3 96,541 + -0.8 96,541 + -1.1 96,541 + +0.3 96,541 + +0.5 96,541 + -1.4 96,541 + +0.5 96,541 + -0.8 96,541 + -1.3 96,541 + -1.8 96,541 + -1.8 96,541 + +1.3 96,541 + -0.6 96,541 + +1.5 96,541 + -0.8 96,541 + -0.1 96,541 + +0.5 96,541 + +1.5 96,541 + -0.1 96,541 + -1.5 96,541 + +0.1 96,542 - +0.8 96,542 - -0.1 96,542 - +0.2 96,542 - -2.2 96,542 - -1.9 96,542 - -0.2 96,542 - +0.2 96,542 - -0.4 96,542 - -0.5 96,542 - -0.5 96,542 - -1.5 96,542 - +0.7 96,542 - -0.1 96,542 - -1.9 96,542 - -1.2 96,542 - -0.3 96,542 - +0.5 96,542 - -0.1 96,542 - -0.5 96,542 - -0.5 96,542 - -0.1 96,542 - -1.0 96,542 - -0.9 96,542 - -0.5 96,542 - -2.7 96,542 - +0.7 96,542 - -0.3 96,542 - +2.1 96,542 - +0.9 96,550 + +1.5 96,550 + -1.4 96,550 + -1.3 96,550 + +0.1 96,550 + -0.5 96,550 + -0.1 96,550 + +0.0 96,550 + +0.9 96,550 + -0.1 96,551 - -0.9 96,551 - -0.3 96,551 - +0.5 96,551 - +0.7 96,551 - -0.4 96,673 + MPMX19_00090 0.13 -0.8 96,674 - MPMX19_00090 0.13 -0.8 96,778 + MPMX19_00090 0.23 +0.9 96,778 + MPMX19_00090 0.23 -0.5 96,779 - MPMX19_00090 0.23 -0.8 96,779 - MPMX19_00090 0.23 -0.5 96,779 - MPMX19_00090 0.23 -1.1 96,787 + MPMX19_00090 0.24 -0.5 96,787 + MPMX19_00090 0.24 -0.5 96,787 + MPMX19_00090 0.24 +0.5 96,787 + MPMX19_00090 0.24 +0.5 96,787 + MPMX19_00090 0.24 -1.3 96,787 + MPMX19_00090 0.24 -0.5 96,787 + MPMX19_00090 0.24 +1.1 96,787 + MPMX19_00090 0.24 +1.8 96,787 + MPMX19_00090 0.24 -0.7 96,788 - MPMX19_00090 0.24 -0.8 96,788 - MPMX19_00090 0.24 -1.9 96,788 - MPMX19_00090 0.24 -2.2 96,788 - MPMX19_00090 0.24 -1.7 96,788 - MPMX19_00090 0.24 -1.5 96,788 - MPMX19_00090 0.24 -0.5 96,788 - MPMX19_00090 0.24 +0.5 96,788 - MPMX19_00090 0.24 -0.8 96,788 - MPMX19_00090 0.24 +0.2 96,788 - MPMX19_00090 0.24 -0.8 96,788 - MPMX19_00090 0.24 +0.5 96,829 + MPMX19_00090 0.28 -0.5 96,829 + MPMX19_00090 0.28 +1.8 96,829 + MPMX19_00090 0.28 -2.0 96,829 + MPMX19_00090 0.28 -0.2 96,829 + MPMX19_00090 0.28 -0.1 96,829 + MPMX19_00090 0.28 -0.5 96,829 + MPMX19_00090 0.28 +0.2 96,829 + MPMX19_00090 0.28 -0.7 96,830 - MPMX19_00090 0.28 +2.2 96,830 - MPMX19_00090 0.28 +0.9 96,830 - MPMX19_00090 0.28 +1.1 96,830 - MPMX19_00090 0.28 -0.9 96,830 - MPMX19_00090 0.28 +2.5 96,830 - MPMX19_00090 0.28 +0.7 96,830 - MPMX19_00090 0.28 +0.2 96,830 - MPMX19_00090 0.28 -0.5 96,991 + MPMX19_00090 0.42 +1.1 96,991 + MPMX19_00090 0.42 -1.1 96,992 - MPMX19_00090 0.43 +0.8 96,992 - MPMX19_00090 0.43 -1.8 96,992 - MPMX19_00090 0.43 -1.4 96,992 - MPMX19_00090 0.43 -0.8 96,992 - MPMX19_00090 0.43 -0.8 97,193 + MPMX19_00090 0.61 -1.2 97,194 - MPMX19_00090 0.61 -0.5 97,194 - MPMX19_00090 0.61 -2.1 97,246 + MPMX19_00090 0.66 -0.8 97,246 + MPMX19_00090 0.66 -0.8 97,247 - MPMX19_00090 0.66 -0.3 97,247 - MPMX19_00090 0.66 -2.6 97,319 + MPMX19_00090 0.73 +0.1 97,319 + MPMX19_00090 0.73 -1.7 97,319 + MPMX19_00090 0.73 -1.0 97,319 + MPMX19_00090 0.73 +0.9 97,327 + MPMX19_00090 0.73 +0.2 97,327 + MPMX19_00090 0.73 -0.8 97,327 + MPMX19_00090 0.73 +1.5 97,328 - MPMX19_00090 0.73 +1.5 97,328 - MPMX19_00090 0.73 -0.9 97,328 - MPMX19_00090 0.73 +1.5 97,450 + MPMX19_00090 0.85 +0.9 97,450 + MPMX19_00090 0.85 +0.5 97,451 - MPMX19_00090 0.85 +0.5 97,451 - MPMX19_00090 0.85 -0.1 97,451 - MPMX19_00090 0.85 +0.4 97,451 - MPMX19_00090 0.85 -1.1 97,451 - MPMX19_00090 0.85 -1.3 97,451 - MPMX19_00090 0.85 +0.5 97,451 - MPMX19_00090 0.85 -0.6 97,451 - MPMX19_00090 0.85 -1.6
Or see this region's nucleotide sequence