Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02521

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02519 and MPMX26_02520 are separated by 33 nucleotidesMPMX26_02520 and MPMX26_02521 are separated by 9 nucleotidesMPMX26_02521 and MPMX26_02522 are separated by 243 nucleotidesMPMX26_02522 and MPMX26_02523 are separated by 116 nucleotides MPMX26_02519: MPMX26_02519 - hypothetical protein, at 2,605,546 to 2,607,822 _02519 MPMX26_02520: MPMX26_02520 - hypothetical protein, at 2,607,856 to 2,608,512 _02520 MPMX26_02521: MPMX26_02521 - hypothetical protein, at 2,608,522 to 2,609,985 _02521 MPMX26_02522: MPMX26_02522 - dCTP deaminase, at 2,610,229 to 2,610,798 _02522 MPMX26_02523: MPMX26_02523 - hypothetical protein, at 2,610,915 to 2,611,508 _02523 Position (kb) 2608 2609 2610Strain fitness (log2 ratio) -1 0 1at 2607.952 kb on + strand, within MPMX26_02520at 2609.006 kb on - strand, within MPMX26_02521at 2610.251 kb on - strandat 2610.252 kb on - strandat 2610.301 kb on - strand, within MPMX26_02522at 2610.301 kb on - strand, within MPMX26_02522at 2610.309 kb on - strand, within MPMX26_02522at 2610.311 kb on - strand, within MPMX26_02522at 2610.311 kb on - strand, within MPMX26_02522at 2610.311 kb on - strand, within MPMX26_02522at 2610.311 kb on - strand, within MPMX26_02522at 2610.311 kb on - strand, within MPMX26_02522at 2610.311 kb on - strand, within MPMX26_02522at 2610.338 kb on - strand, within MPMX26_02522at 2610.338 kb on - strand, within MPMX26_02522at 2610.345 kb on - strand, within MPMX26_02522at 2610.345 kb on - strand, within MPMX26_02522at 2610.345 kb on - strand, within MPMX26_02522at 2610.360 kb on - strand, within MPMX26_02522at 2610.407 kb on - strand, within MPMX26_02522at 2610.421 kb on - strand, within MPMX26_02522at 2610.421 kb on - strand, within MPMX26_02522at 2610.421 kb on - strand, within MPMX26_02522at 2610.421 kb on - strand, within MPMX26_02522at 2610.421 kb on - strand, within MPMX26_02522at 2610.421 kb on - strand, within MPMX26_02522at 2610.421 kb on - strand, within MPMX26_02522at 2610.458 kb on - strand, within MPMX26_02522at 2610.458 kb on - strand, within MPMX26_02522at 2610.469 kb on - strand, within MPMX26_02522at 2610.513 kb on - strand, within MPMX26_02522at 2610.518 kb on - strand, within MPMX26_02522at 2610.551 kb on - strand, within MPMX26_02522at 2610.551 kb on - strand, within MPMX26_02522at 2610.551 kb on - strand, within MPMX26_02522at 2610.650 kb on - strand, within MPMX26_02522at 2610.650 kb on - strand, within MPMX26_02522at 2610.665 kb on - strand, within MPMX26_02522at 2610.665 kb on - strand, within MPMX26_02522at 2610.676 kb on - strand, within MPMX26_02522at 2610.676 kb on - strand, within MPMX26_02522at 2610.678 kb on - strand, within MPMX26_02522at 2610.678 kb on - strand, within MPMX26_02522at 2610.681 kb on - strand, within MPMX26_02522at 2610.746 kb on - strandat 2610.746 kb on - strandat 2610.838 kb on - strandat 2610.932 kb on - strandat 2610.932 kb on - strandat 2610.932 kb on - strandat 2610.932 kb on - strandat 2610.932 kb on - strandat 2610.963 kb on - strandat 2610.968 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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2,607,952 + MPMX26_02520 0.15 +0.5
2,609,006 - MPMX26_02521 0.33 -1.1
2,610,251 - +0.2
2,610,252 - +0.2
2,610,301 - MPMX26_02522 0.13 -0.3
2,610,301 - MPMX26_02522 0.13 -0.4
2,610,309 - MPMX26_02522 0.14 -0.4
2,610,311 - MPMX26_02522 0.14 +0.1
2,610,311 - MPMX26_02522 0.14 -0.5
2,610,311 - MPMX26_02522 0.14 -0.3
2,610,311 - MPMX26_02522 0.14 +0.7
2,610,311 - MPMX26_02522 0.14 -0.3
2,610,311 - MPMX26_02522 0.14 +0.4
2,610,338 - MPMX26_02522 0.19 -0.2
2,610,338 - MPMX26_02522 0.19 +0.3
2,610,345 - MPMX26_02522 0.20 -0.4
2,610,345 - MPMX26_02522 0.20 -0.2
2,610,345 - MPMX26_02522 0.20 -0.1
2,610,360 - MPMX26_02522 0.23 -0.3
2,610,407 - MPMX26_02522 0.31 -0.2
2,610,421 - MPMX26_02522 0.34 -0.1
2,610,421 - MPMX26_02522 0.34 -0.1
2,610,421 - MPMX26_02522 0.34 +0.2
2,610,421 - MPMX26_02522 0.34 -0.6
2,610,421 - MPMX26_02522 0.34 -0.2
2,610,421 - MPMX26_02522 0.34 -0.1
2,610,421 - MPMX26_02522 0.34 +0.1
2,610,458 - MPMX26_02522 0.40 -0.4
2,610,458 - MPMX26_02522 0.40 +0.5
2,610,469 - MPMX26_02522 0.42 -0.2
2,610,513 - MPMX26_02522 0.50 -0.0
2,610,518 - MPMX26_02522 0.51 +0.2
2,610,551 - MPMX26_02522 0.56 -0.5
2,610,551 - MPMX26_02522 0.56 -0.0
2,610,551 - MPMX26_02522 0.56 -0.2
2,610,650 - MPMX26_02522 0.74 -0.0
2,610,650 - MPMX26_02522 0.74 -0.5
2,610,665 - MPMX26_02522 0.76 -0.6
2,610,665 - MPMX26_02522 0.76 -1.1
2,610,676 - MPMX26_02522 0.78 -0.3
2,610,676 - MPMX26_02522 0.78 +0.1
2,610,678 - MPMX26_02522 0.79 -0.2
2,610,678 - MPMX26_02522 0.79 -1.2
2,610,681 - MPMX26_02522 0.79 -0.3
2,610,746 - -0.2
2,610,746 - -0.3
2,610,838 - -0.5
2,610,932 - -0.1
2,610,932 - -1.4
2,610,932 - -0.6
2,610,932 - -0.3
2,610,932 - +0.7
2,610,963 - -0.3
2,610,968 - -0.2

Or see this region's nucleotide sequence