Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01774

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01772 and MPMX26_01773 are separated by 92 nucleotidesMPMX26_01773 and MPMX26_01774 are separated by 274 nucleotidesMPMX26_01774 and MPMX26_01775 are separated by 160 nucleotides MPMX26_01772: MPMX26_01772 - hypothetical protein, at 1,833,388 to 1,834,113 _01772 MPMX26_01773: MPMX26_01773 - Protein YceI, at 1,834,206 to 1,834,805 _01773 MPMX26_01774: MPMX26_01774 - hypothetical protein, at 1,835,080 to 1,835,631 _01774 MPMX26_01775: MPMX26_01775 - Transketolase 1, at 1,835,792 to 1,837,780 _01775 Position (kb) 1835 1836Strain fitness (log2 ratio) -1 0 1at 1834.256 kb on - strandat 1834.337 kb on - strand, within MPMX26_01773at 1834.370 kb on - strand, within MPMX26_01773at 1834.638 kb on - strand, within MPMX26_01773at 1834.713 kb on - strand, within MPMX26_01773at 1834.754 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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1,834,256 - -1.2
1,834,337 - MPMX26_01773 0.22 +0.7
1,834,370 - MPMX26_01773 0.27 -0.7
1,834,638 - MPMX26_01773 0.72 -0.9
1,834,713 - MPMX26_01773 0.84 -0.1
1,834,754 - -0.3

Or see this region's nucleotide sequence