Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05206 and MPMX19_05207 are separated by 142 nucleotides MPMX19_05207 and MPMX19_05208 are separated by 108 nucleotides
MPMX19_05206: MPMX19_05206 - Toxin RTX-I translocation ATP-binding protein, at 710,867 to 713,029
_05206
MPMX19_05207: MPMX19_05207 - Hemolysin secretion protein D, plasmid, at 713,172 to 714,488
_05207
MPMX19_05208: MPMX19_05208 - hypothetical protein, at 714,597 to 734,141
_05208
Position (kb) 713
714
715 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.433 kb on + strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.434 kb on - strand, within MPMX19_05206 at 712.661 kb on + strand, within MPMX19_05206 at 712.662 kb on - strand, within MPMX19_05206 at 712.968 kb on - strand at 712.968 kb on - strand at 713.793 kb on + strand, within MPMX19_05207 at 713.794 kb on - strand, within MPMX19_05207 at 713.794 kb on - strand, within MPMX19_05207 at 713.794 kb on - strand, within MPMX19_05207 at 714.435 kb on + strand at 714.435 kb on + strand at 714.435 kb on + strand at 714.435 kb on + strand at 714.436 kb on - strand at 714.436 kb on - strand at 714.500 kb on + strand at 714.514 kb on + strand at 714.514 kb on + strand at 714.514 kb on + strand at 714.514 kb on + strand at 714.514 kb on + strand at 714.514 kb on + strand at 714.515 kb on - strand at 714.515 kb on - strand at 714.515 kb on - strand at 714.515 kb on - strand at 715.038 kb on + strand at 715.039 kb on - strand at 715.039 kb on - strand at 715.039 kb on - strand at 715.050 kb on + strand at 715.050 kb on + strand at 715.218 kb on + strand at 715.219 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 712,433 + MPMX19_05206 0.72 -1.0 712,433 + MPMX19_05206 0.72 -1.0 712,433 + MPMX19_05206 0.72 -0.6 712,433 + MPMX19_05206 0.72 -0.2 712,433 + MPMX19_05206 0.72 -1.6 712,433 + MPMX19_05206 0.72 -0.6 712,433 + MPMX19_05206 0.72 -0.8 712,433 + MPMX19_05206 0.72 -0.2 712,433 + MPMX19_05206 0.72 -0.4 712,433 + MPMX19_05206 0.72 -3.3 712,433 + MPMX19_05206 0.72 -1.6 712,433 + MPMX19_05206 0.72 +0.4 712,433 + MPMX19_05206 0.72 +0.1 712,433 + MPMX19_05206 0.72 +0.2 712,433 + MPMX19_05206 0.72 +0.7 712,433 + MPMX19_05206 0.72 +0.2 712,433 + MPMX19_05206 0.72 -1.2 712,433 + MPMX19_05206 0.72 -0.4 712,433 + MPMX19_05206 0.72 -0.5 712,433 + MPMX19_05206 0.72 -2.4 712,433 + MPMX19_05206 0.72 +0.4 712,434 - MPMX19_05206 0.72 -0.1 712,434 - MPMX19_05206 0.72 -0.0 712,434 - MPMX19_05206 0.72 -0.3 712,434 - MPMX19_05206 0.72 +0.4 712,434 - MPMX19_05206 0.72 +0.3 712,434 - MPMX19_05206 0.72 +1.1 712,434 - MPMX19_05206 0.72 +0.2 712,434 - MPMX19_05206 0.72 +1.4 712,434 - MPMX19_05206 0.72 +0.5 712,434 - MPMX19_05206 0.72 +0.2 712,434 - MPMX19_05206 0.72 +1.0 712,434 - MPMX19_05206 0.72 -0.9 712,434 - MPMX19_05206 0.72 +1.1 712,434 - MPMX19_05206 0.72 -0.3 712,434 - MPMX19_05206 0.72 -0.1 712,434 - MPMX19_05206 0.72 +0.5 712,434 - MPMX19_05206 0.72 +1.1 712,434 - MPMX19_05206 0.72 +0.4 712,434 - MPMX19_05206 0.72 -0.6 712,661 + MPMX19_05206 0.83 -0.8 712,662 - MPMX19_05206 0.83 +0.8 712,968 - -1.3 712,968 - -0.2 713,793 + MPMX19_05207 0.47 -0.8 713,794 - MPMX19_05207 0.47 -1.9 713,794 - MPMX19_05207 0.47 -0.5 713,794 - MPMX19_05207 0.47 -0.6 714,435 + -1.6 714,435 + -0.2 714,435 + -1.2 714,435 + +0.6 714,436 - -0.3 714,436 - -0.2 714,500 + +0.3 714,514 + -1.5 714,514 + -0.2 714,514 + -0.6 714,514 + +0.2 714,514 + -0.2 714,514 + -1.4 714,515 - -0.8 714,515 - -0.6 714,515 - +1.7 714,515 - +0.4 715,038 + -0.9 715,039 - -0.4 715,039 - -1.2 715,039 - -0.7 715,050 + +0.1 715,050 + +0.2 715,218 + -0.8 715,219 - -0.2
Or see this region's nucleotide sequence