Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05198

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05197 and MPMX19_05198 are separated by 27 nucleotidesMPMX19_05198 and MPMX19_05199 are separated by 190 nucleotides MPMX19_05197: MPMX19_05197 - Inducible ornithine decarboxylase, at 699,833 to 702,193 _05197 MPMX19_05198: MPMX19_05198 - hypothetical protein, at 702,221 to 702,877 _05198 MPMX19_05199: MPMX19_05199 - Zinc transport protein ZntB, at 703,068 to 704,078 _05199 Position (kb) 702 703Strain fitness (log2 ratio) -2 -1 0 1 2at 701.517 kb on + strand, within MPMX19_05197at 701.517 kb on + strand, within MPMX19_05197at 701.517 kb on + strand, within MPMX19_05197at 701.517 kb on + strand, within MPMX19_05197at 701.517 kb on + strand, within MPMX19_05197at 701.518 kb on - strand, within MPMX19_05197at 701.518 kb on - strand, within MPMX19_05197at 701.518 kb on - strand, within MPMX19_05197at 701.518 kb on - strand, within MPMX19_05197at 701.518 kb on - strand, within MPMX19_05197at 701.518 kb on - strand, within MPMX19_05197at 701.518 kb on - strand, within MPMX19_05197at 701.518 kb on - strand, within MPMX19_05197at 701.685 kb on + strand, within MPMX19_05197at 701.685 kb on + strand, within MPMX19_05197at 701.685 kb on + strand, within MPMX19_05197at 701.686 kb on - strand, within MPMX19_05197at 701.686 kb on - strand, within MPMX19_05197at 701.686 kb on - strand, within MPMX19_05197at 701.742 kb on + strand, within MPMX19_05197at 701.742 kb on + strand, within MPMX19_05197at 701.742 kb on + strand, within MPMX19_05197at 701.742 kb on + strand, within MPMX19_05197at 701.742 kb on + strand, within MPMX19_05197at 701.742 kb on + strand, within MPMX19_05197at 701.742 kb on + strand, within MPMX19_05197at 701.743 kb on - strand, within MPMX19_05197at 701.743 kb on - strand, within MPMX19_05197at 701.743 kb on - strand, within MPMX19_05197at 701.743 kb on - strand, within MPMX19_05197at 701.787 kb on + strand, within MPMX19_05197at 701.787 kb on + strand, within MPMX19_05197at 701.787 kb on + strand, within MPMX19_05197at 701.787 kb on + strand, within MPMX19_05197at 701.788 kb on - strand, within MPMX19_05197at 701.788 kb on - strand, within MPMX19_05197at 701.853 kb on + strand, within MPMX19_05197at 701.854 kb on - strand, within MPMX19_05197at 701.854 kb on - strand, within MPMX19_05197at 701.854 kb on - strand, within MPMX19_05197at 701.854 kb on - strand, within MPMX19_05197at 701.854 kb on - strand, within MPMX19_05197at 702.501 kb on + strand, within MPMX19_05198at 702.505 kb on + strand, within MPMX19_05198at 702.506 kb on - strand, within MPMX19_05198at 702.506 kb on - strand, within MPMX19_05198at 702.513 kb on + strand, within MPMX19_05198at 702.513 kb on + strand, within MPMX19_05198at 702.513 kb on + strand, within MPMX19_05198at 702.513 kb on + strand, within MPMX19_05198at 702.513 kb on + strand, within MPMX19_05198at 702.514 kb on - strand, within MPMX19_05198at 702.514 kb on - strand, within MPMX19_05198at 702.514 kb on - strand, within MPMX19_05198at 702.534 kb on + strand, within MPMX19_05198at 702.534 kb on + strand, within MPMX19_05198at 702.534 kb on + strand, within MPMX19_05198at 702.534 kb on + strand, within MPMX19_05198at 702.535 kb on - strand, within MPMX19_05198at 702.535 kb on - strand, within MPMX19_05198at 702.570 kb on + strand, within MPMX19_05198at 702.571 kb on - strand, within MPMX19_05198at 702.576 kb on + strand, within MPMX19_05198at 702.577 kb on - strand, within MPMX19_05198at 702.706 kb on + strand, within MPMX19_05198at 702.711 kb on + strand, within MPMX19_05198at 702.711 kb on + strand, within MPMX19_05198at 702.711 kb on + strand, within MPMX19_05198at 702.712 kb on - strand, within MPMX19_05198at 702.717 kb on + strand, within MPMX19_05198at 702.717 kb on + strand, within MPMX19_05198at 702.717 kb on + strand, within MPMX19_05198at 702.717 kb on + strand, within MPMX19_05198at 702.717 kb on + strand, within MPMX19_05198at 702.717 kb on + strand, within MPMX19_05198at 702.718 kb on - strand, within MPMX19_05198at 702.718 kb on - strand, within MPMX19_05198at 702.718 kb on - strand, within MPMX19_05198at 702.718 kb on - strand, within MPMX19_05198at 702.718 kb on - strand, within MPMX19_05198at 702.718 kb on - strand, within MPMX19_05198at 702.718 kb on - strand, within MPMX19_05198at 702.718 kb on - strand, within MPMX19_05198at 703.010 kb on + strandat 703.067 kb on + strandat 703.116 kb on + strandat 703.116 kb on + strandat 703.123 kb on + strandat 703.124 kb on - strandat 703.362 kb on + strand, within MPMX19_05199at 703.362 kb on + strand, within MPMX19_05199at 703.362 kb on + strand, within MPMX19_05199at 703.362 kb on + strand, within MPMX19_05199at 703.362 kb on + strand, within MPMX19_05199at 703.363 kb on - strand, within MPMX19_05199at 703.363 kb on - strand, within MPMX19_05199at 703.363 kb on - strand, within MPMX19_05199at 703.363 kb on - strand, within MPMX19_05199at 703.363 kb on - strand, within MPMX19_05199at 703.363 kb on - strand, within MPMX19_05199at 703.497 kb on + strand, within MPMX19_05199at 703.497 kb on + strand, within MPMX19_05199at 703.498 kb on - strand, within MPMX19_05199at 703.620 kb on + strand, within MPMX19_05199at 703.798 kb on - strand, within MPMX19_05199at 703.798 kb on - strand, within MPMX19_05199

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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701,517 + MPMX19_05197 0.71 +1.4
701,517 + MPMX19_05197 0.71 -0.2
701,517 + MPMX19_05197 0.71 +1.1
701,517 + MPMX19_05197 0.71 -0.8
701,517 + MPMX19_05197 0.71 -0.3
701,518 - MPMX19_05197 0.71 -0.7
701,518 - MPMX19_05197 0.71 -2.4
701,518 - MPMX19_05197 0.71 -0.9
701,518 - MPMX19_05197 0.71 +1.0
701,518 - MPMX19_05197 0.71 -1.4
701,518 - MPMX19_05197 0.71 +0.0
701,518 - MPMX19_05197 0.71 -1.9
701,518 - MPMX19_05197 0.71 +0.2
701,685 + MPMX19_05197 0.78 -0.5
701,685 + MPMX19_05197 0.78 +1.4
701,685 + MPMX19_05197 0.78 -0.3
701,686 - MPMX19_05197 0.78 -0.6
701,686 - MPMX19_05197 0.78 -0.1
701,686 - MPMX19_05197 0.78 +0.1
701,742 + MPMX19_05197 0.81 -0.9
701,742 + MPMX19_05197 0.81 -0.1
701,742 + MPMX19_05197 0.81 +0.2
701,742 + MPMX19_05197 0.81 -1.2
701,742 + MPMX19_05197 0.81 -0.5
701,742 + MPMX19_05197 0.81 -1.2
701,742 + MPMX19_05197 0.81 -0.9
701,743 - MPMX19_05197 0.81 +0.5
701,743 - MPMX19_05197 0.81 -0.3
701,743 - MPMX19_05197 0.81 -0.0
701,743 - MPMX19_05197 0.81 -0.4
701,787 + MPMX19_05197 0.83 +0.4
701,787 + MPMX19_05197 0.83 -1.2
701,787 + MPMX19_05197 0.83 -1.0
701,787 + MPMX19_05197 0.83 -0.8
701,788 - MPMX19_05197 0.83 +1.0
701,788 - MPMX19_05197 0.83 -0.8
701,853 + MPMX19_05197 0.86 +1.0
701,854 - MPMX19_05197 0.86 +0.0
701,854 - MPMX19_05197 0.86 -0.6
701,854 - MPMX19_05197 0.86 -0.9
701,854 - MPMX19_05197 0.86 -0.4
701,854 - MPMX19_05197 0.86 -1.6
702,501 + MPMX19_05198 0.43 -2.4
702,505 + MPMX19_05198 0.43 -0.2
702,506 - MPMX19_05198 0.43 -1.2
702,506 - MPMX19_05198 0.43 +2.4
702,513 + MPMX19_05198 0.44 +0.7
702,513 + MPMX19_05198 0.44 -0.2
702,513 + MPMX19_05198 0.44 +0.4
702,513 + MPMX19_05198 0.44 -0.6
702,513 + MPMX19_05198 0.44 +0.4
702,514 - MPMX19_05198 0.45 +0.2
702,514 - MPMX19_05198 0.45 -0.0
702,514 - MPMX19_05198 0.45 +0.9
702,534 + MPMX19_05198 0.48 -0.4
702,534 + MPMX19_05198 0.48 -1.3
702,534 + MPMX19_05198 0.48 -0.4
702,534 + MPMX19_05198 0.48 -0.8
702,535 - MPMX19_05198 0.48 +0.9
702,535 - MPMX19_05198 0.48 +0.7
702,570 + MPMX19_05198 0.53 +0.1
702,571 - MPMX19_05198 0.53 +0.4
702,576 + MPMX19_05198 0.54 +1.4
702,577 - MPMX19_05198 0.54 -0.5
702,706 + MPMX19_05198 0.74 -0.0
702,711 + MPMX19_05198 0.75 -0.0
702,711 + MPMX19_05198 0.75 +0.0
702,711 + MPMX19_05198 0.75 -0.1
702,712 - MPMX19_05198 0.75 -0.3
702,717 + MPMX19_05198 0.75 +2.1
702,717 + MPMX19_05198 0.75 -0.6
702,717 + MPMX19_05198 0.75 -0.7
702,717 + MPMX19_05198 0.75 -0.1
702,717 + MPMX19_05198 0.75 -0.3
702,717 + MPMX19_05198 0.75 +0.3
702,718 - MPMX19_05198 0.76 +0.1
702,718 - MPMX19_05198 0.76 +0.7
702,718 - MPMX19_05198 0.76 +1.0
702,718 - MPMX19_05198 0.76 +0.2
702,718 - MPMX19_05198 0.76 +0.4
702,718 - MPMX19_05198 0.76 -0.2
702,718 - MPMX19_05198 0.76 -0.3
702,718 - MPMX19_05198 0.76 -2.2
703,010 + +0.1
703,067 + -1.2
703,116 + -0.5
703,116 + -0.4
703,123 + +0.1
703,124 - -2.0
703,362 + MPMX19_05199 0.29 -1.8
703,362 + MPMX19_05199 0.29 +0.5
703,362 + MPMX19_05199 0.29 -0.7
703,362 + MPMX19_05199 0.29 +0.4
703,362 + MPMX19_05199 0.29 +0.9
703,363 - MPMX19_05199 0.29 -0.0
703,363 - MPMX19_05199 0.29 -0.0
703,363 - MPMX19_05199 0.29 -0.3
703,363 - MPMX19_05199 0.29 -0.9
703,363 - MPMX19_05199 0.29 -0.6
703,363 - MPMX19_05199 0.29 -0.3
703,497 + MPMX19_05199 0.42 -1.2
703,497 + MPMX19_05199 0.42 +0.2
703,498 - MPMX19_05199 0.43 -0.0
703,620 + MPMX19_05199 0.55 +0.4
703,798 - MPMX19_05199 0.72 -0.5
703,798 - MPMX19_05199 0.72 +0.7

Or see this region's nucleotide sequence