Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04392

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04391 and MPMX19_04392 are separated by 32 nucleotidesMPMX19_04392 and MPMX19_04393 are separated by 75 nucleotidesMPMX19_04393 and MPMX19_04394 are separated by 265 nucleotides MPMX19_04391: MPMX19_04391 - Homoserine O-acetyltransferase, at 756,740 to 757,957 _04391 MPMX19_04392: MPMX19_04392 - Bifunctional methionine biosynthesis protein MetXA/MetW, at 757,990 to 758,598 _04392 MPMX19_04393: MPMX19_04393 - hypothetical protein, at 758,674 to 758,943 _04393 MPMX19_04394: MPMX19_04394 - hypothetical protein, at 759,209 to 759,781 _04394 Position (kb) 757 758 759Strain fitness (log2 ratio) -3 -2 -1 0 1at 757.053 kb on - strand, within MPMX19_04391at 757.137 kb on - strand, within MPMX19_04391at 757.406 kb on + strand, within MPMX19_04391at 757.406 kb on + strand, within MPMX19_04391at 757.406 kb on + strand, within MPMX19_04391at 757.406 kb on + strand, within MPMX19_04391at 757.406 kb on + strand, within MPMX19_04391at 757.406 kb on + strand, within MPMX19_04391at 757.406 kb on + strand, within MPMX19_04391at 757.407 kb on - strand, within MPMX19_04391at 757.407 kb on - strand, within MPMX19_04391at 757.407 kb on - strand, within MPMX19_04391at 757.407 kb on - strand, within MPMX19_04391at 757.407 kb on - strand, within MPMX19_04391at 757.407 kb on - strand, within MPMX19_04391at 757.407 kb on - strand, within MPMX19_04391at 757.472 kb on + strand, within MPMX19_04391at 757.472 kb on + strand, within MPMX19_04391at 757.472 kb on + strand, within MPMX19_04391at 757.472 kb on + strand, within MPMX19_04391at 757.472 kb on + strand, within MPMX19_04391at 757.472 kb on + strand, within MPMX19_04391at 757.473 kb on - strand, within MPMX19_04391at 757.473 kb on - strand, within MPMX19_04391at 757.473 kb on - strand, within MPMX19_04391at 757.473 kb on - strand, within MPMX19_04391at 757.473 kb on - strand, within MPMX19_04391at 757.538 kb on + strand, within MPMX19_04391at 757.571 kb on + strand, within MPMX19_04391at 757.572 kb on - strand, within MPMX19_04391at 757.572 kb on - strand, within MPMX19_04391at 757.572 kb on - strand, within MPMX19_04391at 757.581 kb on - strand, within MPMX19_04391at 757.622 kb on + strand, within MPMX19_04391at 757.622 kb on + strand, within MPMX19_04391at 757.622 kb on + strand, within MPMX19_04391at 757.622 kb on + strand, within MPMX19_04391at 757.623 kb on - strand, within MPMX19_04391at 757.623 kb on - strand, within MPMX19_04391at 757.623 kb on - strand, within MPMX19_04391at 757.623 kb on - strand, within MPMX19_04391at 757.623 kb on - strand, within MPMX19_04391at 757.628 kb on + strand, within MPMX19_04391at 757.628 kb on + strand, within MPMX19_04391at 757.628 kb on + strand, within MPMX19_04391at 757.628 kb on + strand, within MPMX19_04391at 757.628 kb on + strand, within MPMX19_04391at 757.628 kb on + strand, within MPMX19_04391at 757.628 kb on + strand, within MPMX19_04391at 757.628 kb on + strand, within MPMX19_04391at 757.628 kb on + strand, within MPMX19_04391at 757.629 kb on - strand, within MPMX19_04391at 757.629 kb on - strand, within MPMX19_04391at 757.629 kb on - strand, within MPMX19_04391at 757.629 kb on - strand, within MPMX19_04391at 757.629 kb on - strand, within MPMX19_04391at 757.629 kb on - strand, within MPMX19_04391at 757.629 kb on - strand, within MPMX19_04391at 757.649 kb on + strand, within MPMX19_04391at 757.965 kb on + strandat 757.965 kb on + strandat 757.965 kb on + strandat 757.966 kb on - strandat 758.213 kb on - strand, within MPMX19_04392at 758.233 kb on + strand, within MPMX19_04392at 758.233 kb on + strand, within MPMX19_04392at 758.233 kb on + strand, within MPMX19_04392at 758.233 kb on + strand, within MPMX19_04392at 758.234 kb on - strand, within MPMX19_04392at 758.234 kb on - strand, within MPMX19_04392at 758.234 kb on - strand, within MPMX19_04392at 758.255 kb on + strand, within MPMX19_04392at 758.255 kb on + strand, within MPMX19_04392at 758.440 kb on - strand, within MPMX19_04392at 758.647 kb on + strandat 758.647 kb on + strandat 758.647 kb on + strandat 758.648 kb on - strandat 758.648 kb on - strandat 758.666 kb on + strandat 758.666 kb on + strandat 758.666 kb on + strandat 758.667 kb on - strandat 758.667 kb on - strandat 758.667 kb on - strandat 758.667 kb on - strandat 758.772 kb on + strand, within MPMX19_04393at 758.773 kb on - strand, within MPMX19_04393at 758.830 kb on + strand, within MPMX19_04393at 758.830 kb on + strand, within MPMX19_04393at 758.830 kb on + strand, within MPMX19_04393at 758.830 kb on + strand, within MPMX19_04393at 758.831 kb on - strand, within MPMX19_04393at 758.945 kb on + strandat 758.945 kb on + strandat 758.946 kb on - strandat 758.946 kb on - strandat 759.125 kb on + strandat 759.125 kb on + strandat 759.125 kb on + strandat 759.125 kb on + strandat 759.125 kb on + strandat 759.125 kb on + strandat 759.125 kb on + strandat 759.125 kb on + strandat 759.125 kb on + strandat 759.126 kb on - strandat 759.126 kb on - strandat 759.126 kb on - strandat 759.126 kb on - strandat 759.126 kb on - strandat 759.126 kb on - strandat 759.126 kb on - strandat 759.126 kb on - strandat 759.126 kb on - strandat 759.126 kb on - strandat 759.126 kb on - strandat 759.126 kb on - strandat 759.126 kb on - strandat 759.168 kb on + strandat 759.169 kb on - strandat 759.169 kb on - strandat 759.169 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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757,053 - MPMX19_04391 0.26 +0.8
757,137 - MPMX19_04391 0.33 -2.5
757,406 + MPMX19_04391 0.55 -0.1
757,406 + MPMX19_04391 0.55 -2.3
757,406 + MPMX19_04391 0.55 -0.1
757,406 + MPMX19_04391 0.55 -1.5
757,406 + MPMX19_04391 0.55 -1.5
757,406 + MPMX19_04391 0.55 -0.5
757,406 + MPMX19_04391 0.55 -0.9
757,407 - MPMX19_04391 0.55 -1.1
757,407 - MPMX19_04391 0.55 -1.1
757,407 - MPMX19_04391 0.55 -1.3
757,407 - MPMX19_04391 0.55 -1.5
757,407 - MPMX19_04391 0.55 -0.5
757,407 - MPMX19_04391 0.55 -1.8
757,407 - MPMX19_04391 0.55 -2.1
757,472 + MPMX19_04391 0.60 +0.5
757,472 + MPMX19_04391 0.60 -1.3
757,472 + MPMX19_04391 0.60 -1.8
757,472 + MPMX19_04391 0.60 -2.1
757,472 + MPMX19_04391 0.60 -2.7
757,472 + MPMX19_04391 0.60 -1.8
757,473 - MPMX19_04391 0.60 -0.5
757,473 - MPMX19_04391 0.60 +0.1
757,473 - MPMX19_04391 0.60 -2.8
757,473 - MPMX19_04391 0.60 +0.5
757,473 - MPMX19_04391 0.60 -2.3
757,538 + MPMX19_04391 0.66 -1.1
757,571 + MPMX19_04391 0.68 -2.7
757,572 - MPMX19_04391 0.68 +0.9
757,572 - MPMX19_04391 0.68 -2.7
757,572 - MPMX19_04391 0.68 +0.5
757,581 - MPMX19_04391 0.69 +0.5
757,622 + MPMX19_04391 0.72 -2.1
757,622 + MPMX19_04391 0.72 -0.1
757,622 + MPMX19_04391 0.72 -0.5
757,622 + MPMX19_04391 0.72 -2.1
757,623 - MPMX19_04391 0.72 -0.5
757,623 - MPMX19_04391 0.72 -3.0
757,623 - MPMX19_04391 0.72 +0.1
757,623 - MPMX19_04391 0.72 +0.9
757,623 - MPMX19_04391 0.72 -1.5
757,628 + MPMX19_04391 0.73 -1.8
757,628 + MPMX19_04391 0.73 -0.7
757,628 + MPMX19_04391 0.73 -2.1
757,628 + MPMX19_04391 0.73 -0.5
757,628 + MPMX19_04391 0.73 -1.1
757,628 + MPMX19_04391 0.73 -0.8
757,628 + MPMX19_04391 0.73 -0.5
757,628 + MPMX19_04391 0.73 -0.1
757,628 + MPMX19_04391 0.73 -0.5
757,629 - MPMX19_04391 0.73 -0.5
757,629 - MPMX19_04391 0.73 -2.1
757,629 - MPMX19_04391 0.73 -1.5
757,629 - MPMX19_04391 0.73 -2.3
757,629 - MPMX19_04391 0.73 -2.3
757,629 - MPMX19_04391 0.73 +0.1
757,629 - MPMX19_04391 0.73 -1.5
757,649 + MPMX19_04391 0.75 -1.5
757,965 + -0.7
757,965 + -0.1
757,965 + -0.5
757,966 - -1.0
758,213 - MPMX19_04392 0.37 -1.8
758,233 + MPMX19_04392 0.40 -1.8
758,233 + MPMX19_04392 0.40 -0.7
758,233 + MPMX19_04392 0.40 -0.5
758,233 + MPMX19_04392 0.40 +0.1
758,234 - MPMX19_04392 0.40 -1.5
758,234 - MPMX19_04392 0.40 -1.5
758,234 - MPMX19_04392 0.40 -0.5
758,255 + MPMX19_04392 0.44 -1.5
758,255 + MPMX19_04392 0.44 -1.8
758,440 - MPMX19_04392 0.74 +0.5
758,647 + -0.1
758,647 + +0.2
758,647 + +0.5
758,648 - -0.2
758,648 - -0.4
758,666 + -0.4
758,666 + -0.1
758,666 + -0.5
758,667 - -0.7
758,667 - -0.4
758,667 - +0.1
758,667 - +0.5
758,772 + MPMX19_04393 0.36 -1.7
758,773 - MPMX19_04393 0.37 -0.1
758,830 + MPMX19_04393 0.58 +0.5
758,830 + MPMX19_04393 0.58 -1.3
758,830 + MPMX19_04393 0.58 -0.6
758,830 + MPMX19_04393 0.58 -1.5
758,831 - MPMX19_04393 0.58 -1.8
758,945 + +0.5
758,945 + -0.1
758,946 - +1.0
758,946 - +0.1
759,125 + -1.5
759,125 + -1.1
759,125 + -0.8
759,125 + +0.7
759,125 + -0.0
759,125 + -0.5
759,125 + -1.3
759,125 + -0.3
759,125 + -0.1
759,126 - -0.8
759,126 - -0.9
759,126 - -1.4
759,126 - -0.2
759,126 - -0.7
759,126 - +0.1
759,126 - +1.1
759,126 - +1.5
759,126 - +0.5
759,126 - -0.5
759,126 - -0.5
759,126 - -0.8
759,126 - -0.3
759,168 + +0.5
759,169 - +1.3
759,169 - -1.3
759,169 - -0.1

Or see this region's nucleotide sequence