Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04121

Experiment: NLN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04118 and MPMX19_04119 are separated by 27 nucleotidesMPMX19_04119 and MPMX19_04120 overlap by 14 nucleotidesMPMX19_04120 and MPMX19_04121 are separated by 19 nucleotidesMPMX19_04121 and MPMX19_04122 are separated by 45 nucleotides MPMX19_04118: MPMX19_04118 - Sensor histidine kinase RcsC, at 427,070 to 428,731 _04118 MPMX19_04119: MPMX19_04119 - hypothetical protein, at 428,759 to 429,166 _04119 MPMX19_04120: MPMX19_04120 - hypothetical protein, at 429,153 to 429,542 _04120 MPMX19_04121: MPMX19_04121 - Putative aminopeptidase YsdC, at 429,562 to 430,620 _04121 MPMX19_04122: MPMX19_04122 - Glutathione biosynthesis bifunctional protein GshAB, at 430,666 to 432,426 _04122 Position (kb) 429 430 431Strain fitness (log2 ratio) -2 -1 0 1at 428.865 kb on + strand, within MPMX19_04119at 428.866 kb on - strand, within MPMX19_04119at 428.866 kb on - strand, within MPMX19_04119at 428.925 kb on + strand, within MPMX19_04119at 428.926 kb on - strand, within MPMX19_04119at 428.926 kb on - strand, within MPMX19_04119at 429.039 kb on + strand, within MPMX19_04119at 429.039 kb on + strand, within MPMX19_04119at 429.039 kb on + strand, within MPMX19_04119at 429.040 kb on - strand, within MPMX19_04119at 429.040 kb on - strand, within MPMX19_04119at 429.040 kb on - strand, within MPMX19_04119at 429.166 kb on + strandat 429.274 kb on + strand, within MPMX19_04120at 429.274 kb on + strand, within MPMX19_04120at 429.292 kb on + strand, within MPMX19_04120at 429.292 kb on + strand, within MPMX19_04120at 429.326 kb on + strand, within MPMX19_04120at 429.326 kb on + strand, within MPMX19_04120at 429.355 kb on + strand, within MPMX19_04120at 429.355 kb on + strand, within MPMX19_04120at 429.355 kb on + strand, within MPMX19_04120at 429.355 kb on + strand, within MPMX19_04120at 429.355 kb on + strand, within MPMX19_04120at 429.500 kb on + strand, within MPMX19_04120at 429.500 kb on + strand, within MPMX19_04120at 429.528 kb on + strandat 429.528 kb on + strandat 429.528 kb on + strandat 429.529 kb on - strandat 429.529 kb on - strandat 429.587 kb on + strandat 429.587 kb on + strandat 429.587 kb on + strandat 429.588 kb on - strandat 429.588 kb on - strandat 429.588 kb on - strandat 429.588 kb on - strandat 429.588 kb on - strandat 429.588 kb on - strandat 429.599 kb on - strandat 429.641 kb on + strandat 429.641 kb on + strandat 429.728 kb on + strand, within MPMX19_04121at 429.728 kb on + strand, within MPMX19_04121at 429.729 kb on - strand, within MPMX19_04121at 429.729 kb on - strand, within MPMX19_04121at 429.731 kb on + strand, within MPMX19_04121at 429.731 kb on + strand, within MPMX19_04121at 429.731 kb on + strand, within MPMX19_04121at 429.732 kb on - strand, within MPMX19_04121at 429.732 kb on - strand, within MPMX19_04121at 430.073 kb on + strand, within MPMX19_04121at 430.074 kb on - strand, within MPMX19_04121at 430.074 kb on - strand, within MPMX19_04121at 430.074 kb on - strand, within MPMX19_04121at 430.074 kb on - strand, within MPMX19_04121at 430.074 kb on - strand, within MPMX19_04121at 430.074 kb on - strand, within MPMX19_04121at 430.481 kb on + strand, within MPMX19_04121at 430.481 kb on + strand, within MPMX19_04121at 430.482 kb on - strand, within MPMX19_04121at 430.482 kb on - strand, within MPMX19_04121at 430.482 kb on - strand, within MPMX19_04121at 430.589 kb on + strandat 430.589 kb on + strandat 430.589 kb on + strandat 430.589 kb on + strandat 430.589 kb on + strandat 430.590 kb on - strandat 430.590 kb on - strandat 430.590 kb on - strandat 430.590 kb on - strandat 430.590 kb on - strandat 430.590 kb on - strandat 430.590 kb on - strandat 430.643 kb on + strandat 430.698 kb on + strandat 430.698 kb on + strandat 430.699 kb on - strandat 430.699 kb on - strandat 430.699 kb on - strandat 430.699 kb on - strandat 431.183 kb on + strand, within MPMX19_04122at 431.183 kb on + strand, within MPMX19_04122at 431.183 kb on + strand, within MPMX19_04122at 431.183 kb on + strand, within MPMX19_04122at 431.184 kb on - strand, within MPMX19_04122at 431.184 kb on - strand, within MPMX19_04122at 431.184 kb on - strand, within MPMX19_04122at 431.184 kb on - strand, within MPMX19_04122at 431.513 kb on + strand, within MPMX19_04122at 431.513 kb on + strand, within MPMX19_04122at 431.513 kb on + strand, within MPMX19_04122at 431.514 kb on - strand, within MPMX19_04122at 431.514 kb on - strand, within MPMX19_04122at 431.585 kb on + strand, within MPMX19_04122at 431.585 kb on + strand, within MPMX19_04122at 431.586 kb on - strand, within MPMX19_04122

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NLN
remove
428,865 + MPMX19_04119 0.26 -1.2
428,866 - MPMX19_04119 0.26 -0.8
428,866 - MPMX19_04119 0.26 +0.0
428,925 + MPMX19_04119 0.41 +0.5
428,926 - MPMX19_04119 0.41 +0.8
428,926 - MPMX19_04119 0.41 -0.5
429,039 + MPMX19_04119 0.69 +0.0
429,039 + MPMX19_04119 0.69 -0.9
429,039 + MPMX19_04119 0.69 +0.5
429,040 - MPMX19_04119 0.69 -0.5
429,040 - MPMX19_04119 0.69 +0.2
429,040 - MPMX19_04119 0.69 -0.9
429,166 + -1.1
429,274 + MPMX19_04120 0.31 -0.2
429,274 + MPMX19_04120 0.31 -1.9
429,292 + MPMX19_04120 0.36 -0.1
429,292 + MPMX19_04120 0.36 +0.5
429,326 + MPMX19_04120 0.44 -1.0
429,326 + MPMX19_04120 0.44 -2.1
429,355 + MPMX19_04120 0.52 -0.5
429,355 + MPMX19_04120 0.52 -0.7
429,355 + MPMX19_04120 0.52 -0.8
429,355 + MPMX19_04120 0.52 -0.5
429,355 + MPMX19_04120 0.52 -2.1
429,500 + MPMX19_04120 0.89 -1.0
429,500 + MPMX19_04120 0.89 -0.2
429,528 + -1.9
429,528 + -1.0
429,528 + +0.4
429,529 - -1.1
429,529 - -0.2
429,587 + -0.8
429,587 + +0.0
429,587 + +0.8
429,588 - +0.2
429,588 - -0.8
429,588 - -0.3
429,588 - +1.3
429,588 - -0.9
429,588 - +0.3
429,599 - -1.0
429,641 + +1.7
429,641 + +1.2
429,728 + MPMX19_04121 0.16 -0.3
429,728 + MPMX19_04121 0.16 -1.3
429,729 - MPMX19_04121 0.16 -0.2
429,729 - MPMX19_04121 0.16 -0.8
429,731 + MPMX19_04121 0.16 +0.2
429,731 + MPMX19_04121 0.16 -1.5
429,731 + MPMX19_04121 0.16 -0.5
429,732 - MPMX19_04121 0.16 +0.1
429,732 - MPMX19_04121 0.16 +0.2
430,073 + MPMX19_04121 0.48 +0.0
430,074 - MPMX19_04121 0.48 +0.5
430,074 - MPMX19_04121 0.48 -0.4
430,074 - MPMX19_04121 0.48 -0.1
430,074 - MPMX19_04121 0.48 -1.2
430,074 - MPMX19_04121 0.48 -0.9
430,074 - MPMX19_04121 0.48 -0.5
430,481 + MPMX19_04121 0.87 +1.5
430,481 + MPMX19_04121 0.87 -0.5
430,482 - MPMX19_04121 0.87 -0.8
430,482 - MPMX19_04121 0.87 -0.8
430,482 - MPMX19_04121 0.87 -0.7
430,589 + +0.6
430,589 + -0.5
430,589 + +1.0
430,589 + -1.1
430,589 + -1.1
430,590 - -0.1
430,590 - +1.1
430,590 - -1.1
430,590 - +0.5
430,590 - -0.3
430,590 - +0.5
430,590 - +1.1
430,643 + -1.1
430,698 + -0.4
430,698 + -0.2
430,699 - -0.1
430,699 - +0.2
430,699 - +0.9
430,699 - -1.1
431,183 + MPMX19_04122 0.29 +0.0
431,183 + MPMX19_04122 0.29 -0.8
431,183 + MPMX19_04122 0.29 -2.5
431,183 + MPMX19_04122 0.29 -1.0
431,184 - MPMX19_04122 0.29 +1.2
431,184 - MPMX19_04122 0.29 -1.3
431,184 - MPMX19_04122 0.29 +0.4
431,184 - MPMX19_04122 0.29 -0.2
431,513 + MPMX19_04122 0.48 -0.3
431,513 + MPMX19_04122 0.48 +0.5
431,513 + MPMX19_04122 0.48 -0.5
431,514 - MPMX19_04122 0.48 -0.6
431,514 - MPMX19_04122 0.48 -0.7
431,585 + MPMX19_04122 0.52 +0.7
431,585 + MPMX19_04122 0.52 -0.9
431,586 - MPMX19_04122 0.52 +0.5

Or see this region's nucleotide sequence