Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03379

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03378 and MPMX19_03379 are separated by 66 nucleotidesMPMX19_03379 and MPMX19_03380 are separated by 104 nucleotides MPMX19_03378: MPMX19_03378 - Galactose/methyl galactoside import ATP-binding protein MglA, at 761,870 to 763,417 _03378 MPMX19_03379: MPMX19_03379 - Periplasmic protein TorT, at 763,484 to 764,560 _03379 MPMX19_03380: MPMX19_03380 - 5-oxoprolinase subunit C, at 764,665 to 765,636 _03380 Position (kb) 763 764 765Strain fitness (log2 ratio) -2 -1 0 1 2at 762.678 kb on + strand, within MPMX19_03378at 762.678 kb on + strand, within MPMX19_03378at 762.678 kb on + strand, within MPMX19_03378at 762.678 kb on + strand, within MPMX19_03378at 762.678 kb on + strand, within MPMX19_03378at 762.828 kb on + strand, within MPMX19_03378at 762.828 kb on + strand, within MPMX19_03378at 762.828 kb on + strand, within MPMX19_03378at 762.828 kb on + strand, within MPMX19_03378at 762.828 kb on + strand, within MPMX19_03378at 762.828 kb on + strand, within MPMX19_03378at 762.828 kb on + strand, within MPMX19_03378at 762.828 kb on + strand, within MPMX19_03378at 762.829 kb on - strand, within MPMX19_03378at 762.829 kb on - strand, within MPMX19_03378at 762.829 kb on - strand, within MPMX19_03378at 762.829 kb on - strand, within MPMX19_03378at 762.829 kb on - strand, within MPMX19_03378at 762.829 kb on - strand, within MPMX19_03378at 762.829 kb on - strand, within MPMX19_03378at 762.829 kb on - strand, within MPMX19_03378at 762.829 kb on - strand, within MPMX19_03378at 762.829 kb on - strand, within MPMX19_03378at 763.707 kb on + strand, within MPMX19_03379at 763.708 kb on - strand, within MPMX19_03379at 763.708 kb on - strand, within MPMX19_03379at 763.725 kb on + strand, within MPMX19_03379at 763.725 kb on + strand, within MPMX19_03379at 763.725 kb on + strand, within MPMX19_03379at 763.725 kb on + strand, within MPMX19_03379at 763.726 kb on - strand, within MPMX19_03379at 763.726 kb on - strand, within MPMX19_03379at 763.726 kb on - strand, within MPMX19_03379at 763.726 kb on - strand, within MPMX19_03379at 763.726 kb on - strand, within MPMX19_03379at 763.726 kb on - strand, within MPMX19_03379at 763.726 kb on - strand, within MPMX19_03379at 763.726 kb on - strand, within MPMX19_03379at 763.726 kb on - strand, within MPMX19_03379at 763.726 kb on - strand, within MPMX19_03379at 763.726 kb on - strand, within MPMX19_03379at 763.726 kb on - strand, within MPMX19_03379at 763.815 kb on + strand, within MPMX19_03379at 763.815 kb on + strand, within MPMX19_03379at 763.815 kb on + strand, within MPMX19_03379at 763.815 kb on + strand, within MPMX19_03379at 763.815 kb on + strand, within MPMX19_03379at 763.815 kb on + strand, within MPMX19_03379at 763.815 kb on + strand, within MPMX19_03379at 763.815 kb on + strand, within MPMX19_03379at 763.815 kb on + strand, within MPMX19_03379at 763.816 kb on - strand, within MPMX19_03379at 763.816 kb on - strand, within MPMX19_03379at 763.816 kb on - strand, within MPMX19_03379at 763.816 kb on - strand, within MPMX19_03379at 763.816 kb on - strand, within MPMX19_03379at 763.816 kb on - strand, within MPMX19_03379at 763.816 kb on - strand, within MPMX19_03379at 763.816 kb on - strand, within MPMX19_03379at 763.816 kb on - strand, within MPMX19_03379at 763.816 kb on - strand, within MPMX19_03379at 764.034 kb on + strand, within MPMX19_03379at 764.035 kb on - strand, within MPMX19_03379at 764.259 kb on + strand, within MPMX19_03379at 764.259 kb on + strand, within MPMX19_03379at 764.322 kb on + strand, within MPMX19_03379at 764.323 kb on - strand, within MPMX19_03379at 764.323 kb on - strand, within MPMX19_03379at 764.323 kb on - strand, within MPMX19_03379at 764.340 kb on + strand, within MPMX19_03379at 764.341 kb on - strand, within MPMX19_03379at 764.409 kb on + strand, within MPMX19_03379at 764.409 kb on + strand, within MPMX19_03379at 764.409 kb on + strand, within MPMX19_03379at 764.410 kb on - strand, within MPMX19_03379at 764.607 kb on + strandat 764.608 kb on - strandat 764.616 kb on + strandat 764.616 kb on + strandat 764.616 kb on + strandat 764.617 kb on - strandat 764.617 kb on - strandat 764.617 kb on - strandat 764.617 kb on - strandat 764.617 kb on - strandat 764.617 kb on - strandat 764.617 kb on - strandat 764.617 kb on - strandat 764.617 kb on - strandat 764.617 kb on - strandat 764.618 kb on + strandat 764.618 kb on + strandat 764.618 kb on + strandat 764.618 kb on + strandat 764.618 kb on + strandat 764.618 kb on + strandat 764.618 kb on + strandat 764.618 kb on + strandat 764.619 kb on - strandat 764.619 kb on - strandat 764.619 kb on - strandat 764.619 kb on - strandat 764.619 kb on - strandat 764.825 kb on + strand, within MPMX19_03380at 764.826 kb on - strand, within MPMX19_03380at 764.898 kb on - strand, within MPMX19_03380at 764.903 kb on + strand, within MPMX19_03380at 764.903 kb on + strand, within MPMX19_03380at 764.904 kb on - strand, within MPMX19_03380at 764.904 kb on - strand, within MPMX19_03380at 764.970 kb on + strand, within MPMX19_03380at 764.970 kb on + strand, within MPMX19_03380at 764.970 kb on + strand, within MPMX19_03380at 764.970 kb on + strand, within MPMX19_03380at 764.970 kb on + strand, within MPMX19_03380at 764.971 kb on - strand, within MPMX19_03380at 764.971 kb on - strand, within MPMX19_03380at 765.080 kb on + strand, within MPMX19_03380at 765.080 kb on + strand, within MPMX19_03380at 765.080 kb on + strand, within MPMX19_03380at 765.080 kb on + strand, within MPMX19_03380at 765.080 kb on + strand, within MPMX19_03380at 765.080 kb on + strand, within MPMX19_03380at 765.081 kb on - strand, within MPMX19_03380at 765.091 kb on + strand, within MPMX19_03380at 765.092 kb on - strand, within MPMX19_03380at 765.092 kb on - strand, within MPMX19_03380at 765.092 kb on - strand, within MPMX19_03380at 765.092 kb on - strand, within MPMX19_03380at 765.242 kb on + strand, within MPMX19_03380at 765.242 kb on + strand, within MPMX19_03380at 765.242 kb on + strand, within MPMX19_03380at 765.242 kb on + strand, within MPMX19_03380at 765.242 kb on + strand, within MPMX19_03380at 765.242 kb on + strand, within MPMX19_03380at 765.242 kb on + strand, within MPMX19_03380at 765.242 kb on + strand, within MPMX19_03380at 765.242 kb on + strand, within MPMX19_03380at 765.242 kb on + strand, within MPMX19_03380at 765.242 kb on + strand, within MPMX19_03380at 765.242 kb on + strand, within MPMX19_03380at 765.242 kb on + strand, within MPMX19_03380at 765.243 kb on - strand, within MPMX19_03380at 765.243 kb on - strand, within MPMX19_03380at 765.243 kb on - strand, within MPMX19_03380at 765.243 kb on - strand, within MPMX19_03380at 765.243 kb on - strand, within MPMX19_03380at 765.243 kb on - strand, within MPMX19_03380at 765.243 kb on - strand, within MPMX19_03380at 765.243 kb on - strand, within MPMX19_03380at 765.243 kb on - strand, within MPMX19_03380at 765.243 kb on - strand, within MPMX19_03380at 765.243 kb on - strand, within MPMX19_03380at 765.243 kb on - strand, within MPMX19_03380at 765.299 kb on + strand, within MPMX19_03380at 765.300 kb on - strand, within MPMX19_03380at 765.300 kb on - strand, within MPMX19_03380at 765.323 kb on + strand, within MPMX19_03380at 765.323 kb on + strand, within MPMX19_03380at 765.323 kb on + strand, within MPMX19_03380at 765.530 kb on + strand, within MPMX19_03380

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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762,678 + MPMX19_03378 0.52 +0.4
762,678 + MPMX19_03378 0.52 -1.6
762,678 + MPMX19_03378 0.52 -0.0
762,678 + MPMX19_03378 0.52 +0.4
762,678 + MPMX19_03378 0.52 +0.0
762,828 + MPMX19_03378 0.62 -0.0
762,828 + MPMX19_03378 0.62 +0.1
762,828 + MPMX19_03378 0.62 -1.1
762,828 + MPMX19_03378 0.62 +0.5
762,828 + MPMX19_03378 0.62 -0.2
762,828 + MPMX19_03378 0.62 -0.0
762,828 + MPMX19_03378 0.62 -1.2
762,828 + MPMX19_03378 0.62 +0.4
762,829 - MPMX19_03378 0.62 -0.6
762,829 - MPMX19_03378 0.62 +1.1
762,829 - MPMX19_03378 0.62 -0.4
762,829 - MPMX19_03378 0.62 +1.0
762,829 - MPMX19_03378 0.62 +0.8
762,829 - MPMX19_03378 0.62 +0.4
762,829 - MPMX19_03378 0.62 +0.0
762,829 - MPMX19_03378 0.62 +0.4
762,829 - MPMX19_03378 0.62 +0.7
762,829 - MPMX19_03378 0.62 -0.1
763,707 + MPMX19_03379 0.21 +0.4
763,708 - MPMX19_03379 0.21 +0.3
763,708 - MPMX19_03379 0.21 -0.9
763,725 + MPMX19_03379 0.22 -0.3
763,725 + MPMX19_03379 0.22 +0.3
763,725 + MPMX19_03379 0.22 -1.4
763,725 + MPMX19_03379 0.22 -0.3
763,726 - MPMX19_03379 0.22 -1.0
763,726 - MPMX19_03379 0.22 -2.4
763,726 - MPMX19_03379 0.22 -1.2
763,726 - MPMX19_03379 0.22 -0.1
763,726 - MPMX19_03379 0.22 +0.2
763,726 - MPMX19_03379 0.22 +0.4
763,726 - MPMX19_03379 0.22 +0.8
763,726 - MPMX19_03379 0.22 -0.4
763,726 - MPMX19_03379 0.22 -0.6
763,726 - MPMX19_03379 0.22 +0.2
763,726 - MPMX19_03379 0.22 +0.7
763,726 - MPMX19_03379 0.22 +0.4
763,815 + MPMX19_03379 0.31 +0.9
763,815 + MPMX19_03379 0.31 -0.7
763,815 + MPMX19_03379 0.31 -1.3
763,815 + MPMX19_03379 0.31 +0.4
763,815 + MPMX19_03379 0.31 +0.4
763,815 + MPMX19_03379 0.31 -0.6
763,815 + MPMX19_03379 0.31 +2.7
763,815 + MPMX19_03379 0.31 -0.3
763,815 + MPMX19_03379 0.31 +0.8
763,816 - MPMX19_03379 0.31 +1.4
763,816 - MPMX19_03379 0.31 +0.8
763,816 - MPMX19_03379 0.31 -1.0
763,816 - MPMX19_03379 0.31 -0.1
763,816 - MPMX19_03379 0.31 +1.1
763,816 - MPMX19_03379 0.31 +0.2
763,816 - MPMX19_03379 0.31 +1.6
763,816 - MPMX19_03379 0.31 +0.4
763,816 - MPMX19_03379 0.31 -0.2
763,816 - MPMX19_03379 0.31 -0.4
764,034 + MPMX19_03379 0.51 -0.6
764,035 - MPMX19_03379 0.51 -0.0
764,259 + MPMX19_03379 0.72 +0.9
764,259 + MPMX19_03379 0.72 +1.2
764,322 + MPMX19_03379 0.78 +0.4
764,323 - MPMX19_03379 0.78 -1.2
764,323 - MPMX19_03379 0.78 +0.1
764,323 - MPMX19_03379 0.78 -0.5
764,340 + MPMX19_03379 0.79 -2.6
764,341 - MPMX19_03379 0.80 +1.2
764,409 + MPMX19_03379 0.86 +0.1
764,409 + MPMX19_03379 0.86 -1.1
764,409 + MPMX19_03379 0.86 +0.1
764,410 - MPMX19_03379 0.86 +0.4
764,607 + -0.9
764,608 - +0.1
764,616 + -0.1
764,616 + -1.4
764,616 + -0.6
764,617 - -0.0
764,617 - -0.2
764,617 - -0.2
764,617 - -1.3
764,617 - +0.4
764,617 - -1.2
764,617 - -1.4
764,617 - -0.4
764,617 - -1.4
764,617 - +0.3
764,618 + -0.3
764,618 + +0.0
764,618 + -2.2
764,618 + -1.0
764,618 + -1.0
764,618 + -0.8
764,618 + -2.2
764,618 + +1.3
764,619 - +0.2
764,619 - -0.8
764,619 - -0.3
764,619 - -0.1
764,619 - -0.6
764,825 + MPMX19_03380 0.16 -0.3
764,826 - MPMX19_03380 0.17 -0.3
764,898 - MPMX19_03380 0.24 +0.1
764,903 + MPMX19_03380 0.24 +1.3
764,903 + MPMX19_03380 0.24 -0.8
764,904 - MPMX19_03380 0.25 -0.6
764,904 - MPMX19_03380 0.25 -0.0
764,970 + MPMX19_03380 0.31 -0.3
764,970 + MPMX19_03380 0.31 -0.6
764,970 + MPMX19_03380 0.31 +0.7
764,970 + MPMX19_03380 0.31 -0.6
764,970 + MPMX19_03380 0.31 +0.1
764,971 - MPMX19_03380 0.31 -0.3
764,971 - MPMX19_03380 0.31 +1.5
765,080 + MPMX19_03380 0.43 -0.6
765,080 + MPMX19_03380 0.43 +0.3
765,080 + MPMX19_03380 0.43 -0.8
765,080 + MPMX19_03380 0.43 -0.6
765,080 + MPMX19_03380 0.43 -0.0
765,080 + MPMX19_03380 0.43 +0.7
765,081 - MPMX19_03380 0.43 +0.6
765,091 + MPMX19_03380 0.44 -1.3
765,092 - MPMX19_03380 0.44 -0.5
765,092 - MPMX19_03380 0.44 -2.6
765,092 - MPMX19_03380 0.44 -0.6
765,092 - MPMX19_03380 0.44 +0.1
765,242 + MPMX19_03380 0.59 -1.9
765,242 + MPMX19_03380 0.59 +0.4
765,242 + MPMX19_03380 0.59 -1.6
765,242 + MPMX19_03380 0.59 -1.4
765,242 + MPMX19_03380 0.59 -1.0
765,242 + MPMX19_03380 0.59 +1.1
765,242 + MPMX19_03380 0.59 +0.8
765,242 + MPMX19_03380 0.59 -1.6
765,242 + MPMX19_03380 0.59 -0.8
765,242 + MPMX19_03380 0.59 +0.1
765,242 + MPMX19_03380 0.59 -1.2
765,242 + MPMX19_03380 0.59 -1.9
765,242 + MPMX19_03380 0.59 -1.2
765,243 - MPMX19_03380 0.59 -0.0
765,243 - MPMX19_03380 0.59 -0.6
765,243 - MPMX19_03380 0.59 -0.2
765,243 - MPMX19_03380 0.59 -0.9
765,243 - MPMX19_03380 0.59 -0.3
765,243 - MPMX19_03380 0.59 -2.4
765,243 - MPMX19_03380 0.59 -0.0
765,243 - MPMX19_03380 0.59 -1.6
765,243 - MPMX19_03380 0.59 +1.0
765,243 - MPMX19_03380 0.59 -2.2
765,243 - MPMX19_03380 0.59 -1.0
765,243 - MPMX19_03380 0.59 -1.2
765,299 + MPMX19_03380 0.65 +0.9
765,300 - MPMX19_03380 0.65 +1.4
765,300 - MPMX19_03380 0.65 +0.4
765,323 + MPMX19_03380 0.68 -1.3
765,323 + MPMX19_03380 0.68 -1.4
765,323 + MPMX19_03380 0.68 -0.0
765,530 + MPMX19_03380 0.89 -0.9

Or see this region's nucleotide sequence