Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02921

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02920 and MPMX19_02921 overlap by 7 nucleotidesMPMX19_02921 and MPMX19_02922 overlap by 1 nucleotidesMPMX19_02922 and MPMX19_02923 overlap by 4 nucleotides MPMX19_02920: MPMX19_02920 - hypothetical protein, at 174,131 to 175,396 _02920 MPMX19_02921: MPMX19_02921 - Formyltransferase/hydrolase complex Fhc subunit A, at 175,390 to 177,066 _02921 MPMX19_02922: MPMX19_02922 - Formyltransferase/hydrolase complex subunit D, at 177,066 to 177,989 _02922 MPMX19_02923: MPMX19_02923 - Formyltransferase/hydrolase complex Fhc subunit C, at 177,986 to 178,741 _02923 Position (kb) 175 176 177 178Strain fitness (log2 ratio) -2 -1 0 1 2at 174.923 kb on - strand, within MPMX19_02920at 175.544 kb on + strandat 175.544 kb on + strandat 175.544 kb on + strandat 175.544 kb on + strandat 175.545 kb on - strandat 175.666 kb on - strand, within MPMX19_02921at 175.666 kb on - strand, within MPMX19_02921at 175.666 kb on - strand, within MPMX19_02921at 175.666 kb on - strand, within MPMX19_02921at 175.724 kb on - strand, within MPMX19_02921at 175.724 kb on - strand, within MPMX19_02921at 175.724 kb on - strand, within MPMX19_02921at 175.726 kb on - strand, within MPMX19_02921at 175.726 kb on - strand, within MPMX19_02921at 175.813 kb on + strand, within MPMX19_02921at 175.813 kb on + strand, within MPMX19_02921at 175.813 kb on + strand, within MPMX19_02921at 175.813 kb on + strand, within MPMX19_02921at 175.813 kb on + strand, within MPMX19_02921at 175.813 kb on + strand, within MPMX19_02921at 175.813 kb on + strand, within MPMX19_02921at 175.813 kb on + strand, within MPMX19_02921at 175.813 kb on + strand, within MPMX19_02921at 175.813 kb on + strand, within MPMX19_02921at 175.813 kb on + strand, within MPMX19_02921at 175.813 kb on + strand, within MPMX19_02921at 175.813 kb on + strand, within MPMX19_02921at 175.813 kb on + strand, within MPMX19_02921at 175.813 kb on + strand, within MPMX19_02921at 175.814 kb on - strand, within MPMX19_02921at 175.814 kb on - strand, within MPMX19_02921at 175.814 kb on - strand, within MPMX19_02921at 175.814 kb on - strand, within MPMX19_02921at 175.814 kb on - strand, within MPMX19_02921at 175.814 kb on - strand, within MPMX19_02921at 175.814 kb on - strand, within MPMX19_02921at 175.814 kb on - strand, within MPMX19_02921at 175.814 kb on - strand, within MPMX19_02921at 175.815 kb on + strand, within MPMX19_02921at 175.815 kb on + strand, within MPMX19_02921at 175.815 kb on + strand, within MPMX19_02921at 175.815 kb on + strand, within MPMX19_02921at 175.815 kb on + strand, within MPMX19_02921at 175.815 kb on + strand, within MPMX19_02921at 175.816 kb on - strand, within MPMX19_02921at 175.816 kb on - strand, within MPMX19_02921at 175.816 kb on - strand, within MPMX19_02921at 175.906 kb on + strand, within MPMX19_02921at 175.906 kb on + strand, within MPMX19_02921at 175.907 kb on - strand, within MPMX19_02921at 175.907 kb on - strand, within MPMX19_02921at 175.907 kb on - strand, within MPMX19_02921at 175.907 kb on - strand, within MPMX19_02921at 176.026 kb on + strand, within MPMX19_02921at 176.027 kb on - strand, within MPMX19_02921at 176.027 kb on - strand, within MPMX19_02921at 176.035 kb on - strand, within MPMX19_02921at 176.212 kb on + strand, within MPMX19_02921at 176.212 kb on + strand, within MPMX19_02921at 176.212 kb on + strand, within MPMX19_02921at 176.212 kb on + strand, within MPMX19_02921at 176.213 kb on - strand, within MPMX19_02921at 176.213 kb on - strand, within MPMX19_02921at 176.213 kb on - strand, within MPMX19_02921at 176.213 kb on - strand, within MPMX19_02921at 176.213 kb on - strand, within MPMX19_02921at 176.451 kb on + strand, within MPMX19_02921at 176.452 kb on - strand, within MPMX19_02921at 176.452 kb on - strand, within MPMX19_02921at 176.458 kb on + strand, within MPMX19_02921at 176.458 kb on + strand, within MPMX19_02921at 176.458 kb on + strand, within MPMX19_02921at 176.458 kb on + strand, within MPMX19_02921at 176.458 kb on + strand, within MPMX19_02921at 176.459 kb on - strand, within MPMX19_02921at 176.459 kb on - strand, within MPMX19_02921at 176.459 kb on - strand, within MPMX19_02921at 176.459 kb on - strand, within MPMX19_02921at 176.459 kb on - strand, within MPMX19_02921at 176.532 kb on - strand, within MPMX19_02921at 176.570 kb on - strand, within MPMX19_02921at 176.570 kb on - strand, within MPMX19_02921at 176.788 kb on + strand, within MPMX19_02921at 176.789 kb on - strand, within MPMX19_02921at 176.789 kb on - strand, within MPMX19_02921at 176.789 kb on - strand, within MPMX19_02921at 177.132 kb on + strandat 177.132 kb on + strandat 177.132 kb on + strandat 177.132 kb on + strandat 177.132 kb on + strandat 177.132 kb on + strandat 177.132 kb on + strandat 177.132 kb on + strandat 177.133 kb on - strandat 177.133 kb on - strandat 177.133 kb on - strandat 177.133 kb on - strandat 177.133 kb on - strandat 177.133 kb on - strandat 177.133 kb on - strandat 177.133 kb on - strandat 177.133 kb on - strandat 177.133 kb on - strandat 177.387 kb on + strand, within MPMX19_02922at 177.387 kb on + strand, within MPMX19_02922at 177.388 kb on - strand, within MPMX19_02922at 177.388 kb on - strand, within MPMX19_02922at 177.388 kb on - strand, within MPMX19_02922at 177.441 kb on + strand, within MPMX19_02922at 177.442 kb on - strand, within MPMX19_02922at 177.442 kb on - strand, within MPMX19_02922at 177.708 kb on + strand, within MPMX19_02922at 177.708 kb on + strand, within MPMX19_02922at 177.708 kb on + strand, within MPMX19_02922at 177.708 kb on + strand, within MPMX19_02922at 177.708 kb on + strand, within MPMX19_02922at 177.708 kb on + strand, within MPMX19_02922at 177.708 kb on + strand, within MPMX19_02922at 177.708 kb on + strand, within MPMX19_02922at 177.709 kb on - strand, within MPMX19_02922at 177.709 kb on - strand, within MPMX19_02922at 177.709 kb on - strand, within MPMX19_02922at 177.709 kb on - strand, within MPMX19_02922at 177.709 kb on - strand, within MPMX19_02922at 177.709 kb on - strand, within MPMX19_02922at 177.709 kb on - strand, within MPMX19_02922at 177.709 kb on - strand, within MPMX19_02922at 177.709 kb on - strand, within MPMX19_02922at 177.709 kb on - strand, within MPMX19_02922

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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174,923 - MPMX19_02920 0.63 +0.5
175,544 + -0.5
175,544 + +1.3
175,544 + -0.8
175,544 + -1.5
175,545 - +0.6
175,666 - MPMX19_02921 0.16 +0.5
175,666 - MPMX19_02921 0.16 -0.1
175,666 - MPMX19_02921 0.16 +0.5
175,666 - MPMX19_02921 0.16 -1.2
175,724 - MPMX19_02921 0.20 -0.9
175,724 - MPMX19_02921 0.20 +0.7
175,724 - MPMX19_02921 0.20 -1.0
175,726 - MPMX19_02921 0.20 -0.1
175,726 - MPMX19_02921 0.20 +0.5
175,813 + MPMX19_02921 0.25 -1.3
175,813 + MPMX19_02921 0.25 +0.5
175,813 + MPMX19_02921 0.25 +0.5
175,813 + MPMX19_02921 0.25 -0.5
175,813 + MPMX19_02921 0.25 -0.5
175,813 + MPMX19_02921 0.25 -0.5
175,813 + MPMX19_02921 0.25 -1.5
175,813 + MPMX19_02921 0.25 -1.5
175,813 + MPMX19_02921 0.25 -0.3
175,813 + MPMX19_02921 0.25 -0.2
175,813 + MPMX19_02921 0.25 +0.0
175,813 + MPMX19_02921 0.25 -0.9
175,813 + MPMX19_02921 0.25 -0.3
175,813 + MPMX19_02921 0.25 -2.1
175,813 + MPMX19_02921 0.25 -2.5
175,814 - MPMX19_02921 0.25 +0.3
175,814 - MPMX19_02921 0.25 -0.4
175,814 - MPMX19_02921 0.25 -0.9
175,814 - MPMX19_02921 0.25 -0.1
175,814 - MPMX19_02921 0.25 -0.8
175,814 - MPMX19_02921 0.25 -1.4
175,814 - MPMX19_02921 0.25 -1.9
175,814 - MPMX19_02921 0.25 -0.4
175,814 - MPMX19_02921 0.25 +0.5
175,815 + MPMX19_02921 0.25 -0.5
175,815 + MPMX19_02921 0.25 +0.2
175,815 + MPMX19_02921 0.25 +0.6
175,815 + MPMX19_02921 0.25 +0.5
175,815 + MPMX19_02921 0.25 +0.8
175,815 + MPMX19_02921 0.25 -2.4
175,816 - MPMX19_02921 0.25 +0.9
175,816 - MPMX19_02921 0.25 -0.1
175,816 - MPMX19_02921 0.25 +1.9
175,906 + MPMX19_02921 0.31 -1.1
175,906 + MPMX19_02921 0.31 +0.2
175,907 - MPMX19_02921 0.31 -0.6
175,907 - MPMX19_02921 0.31 +0.2
175,907 - MPMX19_02921 0.31 -0.5
175,907 - MPMX19_02921 0.31 -0.1
176,026 + MPMX19_02921 0.38 +1.3
176,027 - MPMX19_02921 0.38 +0.5
176,027 - MPMX19_02921 0.38 +0.5
176,035 - MPMX19_02921 0.38 -0.5
176,212 + MPMX19_02921 0.49 +0.6
176,212 + MPMX19_02921 0.49 +0.0
176,212 + MPMX19_02921 0.49 -1.9
176,212 + MPMX19_02921 0.49 +0.0
176,213 - MPMX19_02921 0.49 -0.2
176,213 - MPMX19_02921 0.49 +0.1
176,213 - MPMX19_02921 0.49 +0.4
176,213 - MPMX19_02921 0.49 +0.0
176,213 - MPMX19_02921 0.49 -1.7
176,451 + MPMX19_02921 0.63 -0.9
176,452 - MPMX19_02921 0.63 +0.2
176,452 - MPMX19_02921 0.63 +1.5
176,458 + MPMX19_02921 0.64 +0.2
176,458 + MPMX19_02921 0.64 -1.0
176,458 + MPMX19_02921 0.64 +0.2
176,458 + MPMX19_02921 0.64 -0.5
176,458 + MPMX19_02921 0.64 +0.1
176,459 - MPMX19_02921 0.64 +0.5
176,459 - MPMX19_02921 0.64 +1.1
176,459 - MPMX19_02921 0.64 +0.2
176,459 - MPMX19_02921 0.64 -0.4
176,459 - MPMX19_02921 0.64 +0.9
176,532 - MPMX19_02921 0.68 -1.3
176,570 - MPMX19_02921 0.70 +0.1
176,570 - MPMX19_02921 0.70 +1.0
176,788 + MPMX19_02921 0.83 +0.1
176,789 - MPMX19_02921 0.83 +0.2
176,789 - MPMX19_02921 0.83 +1.8
176,789 - MPMX19_02921 0.83 +0.7
177,132 + +0.4
177,132 + +0.2
177,132 + +0.1
177,132 + +0.6
177,132 + +0.5
177,132 + +0.1
177,132 + +0.6
177,132 + +0.8
177,133 - +0.2
177,133 - +0.4
177,133 - -0.9
177,133 - +1.2
177,133 - -1.1
177,133 - +1.0
177,133 - -1.0
177,133 - -0.2
177,133 - -1.1
177,133 - -0.1
177,387 + MPMX19_02922 0.35 -1.0
177,387 + MPMX19_02922 0.35 -0.5
177,388 - MPMX19_02922 0.35 -0.1
177,388 - MPMX19_02922 0.35 -0.6
177,388 - MPMX19_02922 0.35 +0.8
177,441 + MPMX19_02922 0.41 +0.9
177,442 - MPMX19_02922 0.41 +0.8
177,442 - MPMX19_02922 0.41 -2.7
177,708 + MPMX19_02922 0.69 -1.3
177,708 + MPMX19_02922 0.69 -1.1
177,708 + MPMX19_02922 0.69 -0.5
177,708 + MPMX19_02922 0.69 -1.3
177,708 + MPMX19_02922 0.69 -0.5
177,708 + MPMX19_02922 0.69 +0.1
177,708 + MPMX19_02922 0.69 -0.8
177,708 + MPMX19_02922 0.69 +0.5
177,709 - MPMX19_02922 0.70 -0.4
177,709 - MPMX19_02922 0.70 -0.4
177,709 - MPMX19_02922 0.70 -0.7
177,709 - MPMX19_02922 0.70 -0.1
177,709 - MPMX19_02922 0.70 +1.2
177,709 - MPMX19_02922 0.70 -0.5
177,709 - MPMX19_02922 0.70 -0.3
177,709 - MPMX19_02922 0.70 -0.5
177,709 - MPMX19_02922 0.70 -1.9
177,709 - MPMX19_02922 0.70 -0.6

Or see this region's nucleotide sequence