Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02640

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02639 and MPMX19_02640 are separated by 51 nucleotidesMPMX19_02640 and MPMX19_02641 are separated by 260 nucleotidesMPMX19_02641 and MPMX19_02642 are separated by 118 nucleotides MPMX19_02639: MPMX19_02639 - 3-dehydroquinate synthase, at 2,756,288 to 2,757,433 _02639 MPMX19_02640: MPMX19_02640 - Shikimate kinase, at 2,757,485 to 2,758,309 _02640 MPMX19_02641: MPMX19_02641 - hypothetical protein, at 2,758,570 to 2,758,710 _02641 MPMX19_02642: MPMX19_02642 - hypothetical protein, at 2,758,829 to 2,760,634 _02642 Position (kb) 2757 2758 2759Strain fitness (log2 ratio) -2 -1 0 1at 2758.310 kb on - strandat 2758.427 kb on + strandat 2758.427 kb on + strandat 2758.427 kb on + strandat 2758.427 kb on + strandat 2758.427 kb on + strandat 2758.427 kb on + strandat 2758.427 kb on + strandat 2758.427 kb on + strandat 2758.427 kb on + strandat 2758.427 kb on + strandat 2758.428 kb on - strandat 2758.428 kb on - strandat 2758.428 kb on - strandat 2758.472 kb on + strandat 2758.472 kb on + strandat 2758.472 kb on + strandat 2758.521 kb on + strandat 2758.521 kb on + strandat 2758.521 kb on + strandat 2758.521 kb on + strandat 2758.521 kb on + strandat 2758.521 kb on + strandat 2758.521 kb on + strandat 2758.521 kb on + strandat 2758.521 kb on + strandat 2758.521 kb on + strandat 2758.521 kb on + strandat 2758.521 kb on + strandat 2758.521 kb on + strandat 2758.521 kb on + strandat 2758.521 kb on + strandat 2758.521 kb on + strandat 2758.521 kb on + strandat 2758.521 kb on + strandat 2758.521 kb on + strandat 2758.521 kb on + strandat 2758.521 kb on + strandat 2758.521 kb on + strandat 2758.521 kb on + strandat 2758.521 kb on + strandat 2758.521 kb on + strandat 2758.521 kb on + strandat 2758.521 kb on + strandat 2758.749 kb on + strandat 2758.749 kb on + strandat 2758.749 kb on + strandat 2758.749 kb on + strandat 2758.749 kb on + strandat 2758.749 kb on + strandat 2758.749 kb on + strandat 2758.749 kb on + strandat 2758.750 kb on - strandat 2758.750 kb on - strandat 2758.750 kb on - strandat 2758.750 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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2,758,310 - -0.5
2,758,427 + +1.0
2,758,427 + -0.5
2,758,427 + +0.1
2,758,427 + -0.2
2,758,427 + +0.5
2,758,427 + +0.8
2,758,427 + +0.3
2,758,427 + +0.1
2,758,427 + +0.5
2,758,427 + +0.1
2,758,428 - -0.5
2,758,428 - -0.4
2,758,428 - -1.1
2,758,472 + +0.2
2,758,472 + -0.2
2,758,472 + +0.5
2,758,521 + -0.3
2,758,521 + -1.9
2,758,521 + +1.5
2,758,521 + +0.3
2,758,521 + +0.9
2,758,521 + +0.3
2,758,521 + -1.1
2,758,521 + -0.7
2,758,521 + -2.1
2,758,521 + +0.9
2,758,521 + +0.1
2,758,521 + +1.0
2,758,521 + -1.1
2,758,521 + -1.9
2,758,521 + -1.9
2,758,521 + -1.3
2,758,521 + +0.1
2,758,521 + -0.5
2,758,521 + +1.1
2,758,521 + -1.1
2,758,521 + +1.1
2,758,521 + -0.5
2,758,521 + -0.7
2,758,521 + -0.7
2,758,521 + -1.3
2,758,521 + -0.1
2,758,521 + -1.5
2,758,749 + +0.1
2,758,749 + +0.1
2,758,749 + -1.5
2,758,749 + -1.7
2,758,749 + -0.1
2,758,749 + +0.9
2,758,749 + +0.5
2,758,749 + -0.5
2,758,750 - -1.9
2,758,750 - +0.7
2,758,750 - -0.5
2,758,750 - -0.5

Or see this region's nucleotide sequence