Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00546

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00544 and MPMX19_00545 overlap by 4 nucleotidesMPMX19_00545 and MPMX19_00546 are separated by 452 nucleotidesMPMX19_00546 and MPMX19_00547 are separated by 16 nucleotidesMPMX19_00547 and MPMX19_00548 are separated by 13 nucleotides MPMX19_00544: MPMX19_00544 - hypothetical protein, at 559,394 to 559,903 _00544 MPMX19_00545: MPMX19_00545 - hypothetical protein, at 559,900 to 560,430 _00545 MPMX19_00546: MPMX19_00546 - Chaperone protein TorD, at 560,883 to 561,509 _00546 MPMX19_00547: MPMX19_00547 - hypothetical protein, at 561,526 to 561,777 _00547 MPMX19_00548: MPMX19_00548 - Periplasmic nitrate reductase, at 561,791 to 564,691 _00548 Position (kb) 560 561 562Strain fitness (log2 ratio) -2 -1 0 1at 560.215 kb on + strand, within MPMX19_00545at 560.215 kb on + strand, within MPMX19_00545at 560.215 kb on + strand, within MPMX19_00545at 560.215 kb on + strand, within MPMX19_00545at 560.215 kb on + strand, within MPMX19_00545at 560.215 kb on + strand, within MPMX19_00545at 560.216 kb on - strand, within MPMX19_00545at 560.216 kb on - strand, within MPMX19_00545at 560.216 kb on - strand, within MPMX19_00545at 560.242 kb on + strand, within MPMX19_00545at 560.242 kb on + strand, within MPMX19_00545at 560.242 kb on + strand, within MPMX19_00545at 560.242 kb on + strand, within MPMX19_00545at 560.242 kb on + strand, within MPMX19_00545at 560.242 kb on + strand, within MPMX19_00545at 560.242 kb on + strand, within MPMX19_00545at 560.243 kb on - strand, within MPMX19_00545at 560.243 kb on - strand, within MPMX19_00545at 560.243 kb on - strand, within MPMX19_00545at 560.243 kb on - strand, within MPMX19_00545at 560.243 kb on - strand, within MPMX19_00545at 560.254 kb on + strand, within MPMX19_00545at 560.254 kb on + strand, within MPMX19_00545at 560.254 kb on + strand, within MPMX19_00545at 560.254 kb on + strand, within MPMX19_00545at 560.254 kb on + strand, within MPMX19_00545at 560.255 kb on - strand, within MPMX19_00545at 560.255 kb on - strand, within MPMX19_00545at 560.255 kb on - strand, within MPMX19_00545at 560.296 kb on + strand, within MPMX19_00545at 560.297 kb on - strand, within MPMX19_00545at 560.297 kb on - strand, within MPMX19_00545at 560.428 kb on + strandat 560.429 kb on - strandat 560.429 kb on - strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.653 kb on + strandat 560.653 kb on + strandat 560.653 kb on + strandat 560.653 kb on + strandat 560.654 kb on - strandat 560.654 kb on - strandat 560.716 kb on - strandat 560.716 kb on - strandat 560.716 kb on - strandat 560.730 kb on + strandat 560.730 kb on + strandat 560.730 kb on + strandat 560.730 kb on + strandat 560.730 kb on + strandat 560.730 kb on + strandat 560.730 kb on + strandat 560.730 kb on + strandat 560.730 kb on + strandat 560.730 kb on + strandat 560.731 kb on - strandat 560.731 kb on - strandat 560.731 kb on - strandat 560.731 kb on - strandat 560.731 kb on - strandat 560.731 kb on - strandat 560.731 kb on - strandat 560.731 kb on - strandat 560.903 kb on + strandat 560.903 kb on + strandat 560.903 kb on + strandat 560.903 kb on + strandat 560.903 kb on + strandat 560.903 kb on + strandat 560.903 kb on + strandat 560.903 kb on + strandat 560.904 kb on - strandat 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 561.041 kb on + strand, within MPMX19_00546at 561.165 kb on + strand, within MPMX19_00546at 561.165 kb on + strand, within MPMX19_00546at 561.165 kb on + strand, within MPMX19_00546at 561.165 kb on + strand, within MPMX19_00546at 561.165 kb on + strand, within MPMX19_00546at 561.165 kb on + strand, within MPMX19_00546at 561.165 kb on + strand, within MPMX19_00546at 561.165 kb on + strand, within MPMX19_00546at 561.165 kb on + strand, within MPMX19_00546at 561.165 kb on + strand, within MPMX19_00546at 561.165 kb on + strand, within MPMX19_00546at 561.165 kb on + strand, within MPMX19_00546at 561.165 kb on + strand, within MPMX19_00546at 561.165 kb on + strand, within MPMX19_00546at 561.166 kb on - strand, within MPMX19_00546at 561.166 kb on - strand, within MPMX19_00546at 561.166 kb on - strand, within MPMX19_00546at 561.166 kb on - strand, within MPMX19_00546at 561.166 kb on - strand, within MPMX19_00546at 561.166 kb on - strand, within MPMX19_00546at 561.166 kb on - strand, within MPMX19_00546at 561.166 kb on - strand, within MPMX19_00546at 561.166 kb on - strand, within MPMX19_00546at 561.166 kb on - strand, within MPMX19_00546at 561.166 kb on - strand, within MPMX19_00546at 561.166 kb on - strand, within MPMX19_00546at 561.166 kb on - strand, within MPMX19_00546at 561.166 kb on - strand, within MPMX19_00546at 561.166 kb on - strand, within MPMX19_00546at 561.439 kb on - strand, within MPMX19_00546at 561.579 kb on + strand, within MPMX19_00547at 561.580 kb on - strand, within MPMX19_00547at 561.757 kb on + strandat 561.757 kb on + strandat 561.757 kb on + strandat 561.757 kb on + strandat 561.757 kb on + strandat 561.757 kb on + strandat 561.758 kb on - strandat 561.758 kb on - strandat 561.758 kb on - strandat 561.775 kb on + strandat 561.775 kb on + strandat 561.775 kb on + strandat 561.775 kb on + strandat 561.776 kb on - strandat 561.776 kb on - strandat 561.776 kb on - strandat 561.776 kb on - strandat 561.776 kb on - strandat 561.776 kb on - strandat 561.776 kb on - strandat 561.776 kb on - strandat 561.776 kb on - strandat 561.776 kb on - strandat 561.841 kb on + strandat 562.054 kb on + strandat 562.054 kb on + strandat 562.054 kb on + strandat 562.054 kb on + strandat 562.054 kb on + strandat 562.054 kb on + strandat 562.054 kb on + strandat 562.055 kb on - strandat 562.055 kb on - strandat 562.055 kb on - strandat 562.055 kb on - strandat 562.343 kb on + strand, within MPMX19_00548at 562.343 kb on + strand, within MPMX19_00548at 562.343 kb on + strand, within MPMX19_00548at 562.343 kb on + strand, within MPMX19_00548at 562.343 kb on + strand, within MPMX19_00548at 562.343 kb on + strand, within MPMX19_00548at 562.343 kb on + strand, within MPMX19_00548at 562.343 kb on + strand, within MPMX19_00548at 562.344 kb on - strand, within MPMX19_00548at 562.344 kb on - strand, within MPMX19_00548at 562.344 kb on - strand, within MPMX19_00548at 562.344 kb on - strand, within MPMX19_00548at 562.344 kb on - strand, within MPMX19_00548at 562.344 kb on - strand, within MPMX19_00548at 562.344 kb on - strand, within MPMX19_00548at 562.344 kb on - strand, within MPMX19_00548at 562.469 kb on + strand, within MPMX19_00548at 562.469 kb on + strand, within MPMX19_00548at 562.469 kb on + strand, within MPMX19_00548at 562.469 kb on + strand, within MPMX19_00548at 562.469 kb on + strand, within MPMX19_00548at 562.469 kb on + strand, within MPMX19_00548at 562.469 kb on + strand, within MPMX19_00548at 562.469 kb on + strand, within MPMX19_00548at 562.469 kb on + strand, within MPMX19_00548at 562.469 kb on + strand, within MPMX19_00548at 562.469 kb on + strand, within MPMX19_00548at 562.469 kb on + strand, within MPMX19_00548at 562.469 kb on + strand, within MPMX19_00548at 562.469 kb on + strand, within MPMX19_00548at 562.469 kb on + strand, within MPMX19_00548at 562.469 kb on + strand, within MPMX19_00548at 562.469 kb on + strand, within MPMX19_00548at 562.469 kb on + strand, within MPMX19_00548at 562.469 kb on + strand, within MPMX19_00548at 562.470 kb on - strand, within MPMX19_00548at 562.470 kb on - strand, within MPMX19_00548at 562.470 kb on - strand, within MPMX19_00548at 562.470 kb on - strand, within MPMX19_00548at 562.470 kb on - strand, within MPMX19_00548at 562.470 kb on - strand, within MPMX19_00548at 562.470 kb on - strand, within MPMX19_00548at 562.470 kb on - strand, within MPMX19_00548at 562.470 kb on - strand, within MPMX19_00548at 562.470 kb on - strand, within MPMX19_00548

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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560,215 + MPMX19_00545 0.59 +0.4
560,215 + MPMX19_00545 0.59 -0.9
560,215 + MPMX19_00545 0.59 -0.0
560,215 + MPMX19_00545 0.59 -1.5
560,215 + MPMX19_00545 0.59 -0.2
560,215 + MPMX19_00545 0.59 -0.1
560,216 - MPMX19_00545 0.60 -1.0
560,216 - MPMX19_00545 0.60 -1.4
560,216 - MPMX19_00545 0.60 +0.1
560,242 + MPMX19_00545 0.64 +0.3
560,242 + MPMX19_00545 0.64 -0.3
560,242 + MPMX19_00545 0.64 +0.4
560,242 + MPMX19_00545 0.64 -0.5
560,242 + MPMX19_00545 0.64 -1.0
560,242 + MPMX19_00545 0.64 -2.6
560,242 + MPMX19_00545 0.64 -1.4
560,243 - MPMX19_00545 0.65 +0.4
560,243 - MPMX19_00545 0.65 +0.4
560,243 - MPMX19_00545 0.65 -0.9
560,243 - MPMX19_00545 0.65 -0.8
560,243 - MPMX19_00545 0.65 -0.1
560,254 + MPMX19_00545 0.67 +0.3
560,254 + MPMX19_00545 0.67 -0.6
560,254 + MPMX19_00545 0.67 -0.8
560,254 + MPMX19_00545 0.67 -0.2
560,254 + MPMX19_00545 0.67 -0.6
560,255 - MPMX19_00545 0.67 -1.2
560,255 - MPMX19_00545 0.67 +0.7
560,255 - MPMX19_00545 0.67 +0.2
560,296 + MPMX19_00545 0.75 -1.0
560,297 - MPMX19_00545 0.75 +0.4
560,297 - MPMX19_00545 0.75 -1.2
560,428 + +0.6
560,429 - -0.9
560,429 - +1.0
560,455 + +0.4
560,455 + -1.2
560,455 + -0.7
560,455 + +0.1
560,455 + +1.4
560,455 + -0.7
560,455 + -0.4
560,455 + -0.4
560,455 + -0.8
560,455 + +1.4
560,455 + -0.4
560,455 + -0.6
560,455 + -0.6
560,455 + -1.8
560,455 + -0.0
560,455 + +1.0
560,456 - +1.4
560,456 - +0.2
560,456 - +0.5
560,456 - -1.3
560,456 - +0.4
560,456 - +1.3
560,456 - -1.4
560,456 - +0.2
560,456 - -1.6
560,456 - -0.7
560,456 - -1.5
560,456 - -1.2
560,653 + -0.7
560,653 + -0.5
560,653 + -0.6
560,653 + +1.7
560,654 - +0.3
560,654 - -0.4
560,716 - +0.1
560,716 - +1.4
560,716 - +0.1
560,730 + +0.1
560,730 + -0.6
560,730 + +0.4
560,730 + -1.4
560,730 + -0.9
560,730 + -1.9
560,730 + -0.6
560,730 + -0.6
560,730 + +0.7
560,730 + +0.4
560,731 - -0.3
560,731 - +0.8
560,731 - -0.1
560,731 - +0.4
560,731 - -0.5
560,731 - +0.1
560,731 - -0.1
560,731 - -0.7
560,903 + -0.2
560,903 + -0.2
560,903 + +1.0
560,903 + -1.0
560,903 + -1.3
560,903 + -1.2
560,903 + -0.2
560,903 + -0.2
560,904 - -1.5
560,952 + MPMX19_00546 0.11 -0.1
560,952 + MPMX19_00546 0.11 +1.1
560,952 + MPMX19_00546 0.11 -1.3
560,952 + MPMX19_00546 0.11 -0.2
560,952 + MPMX19_00546 0.11 -1.1
560,952 + MPMX19_00546 0.11 -0.2
560,952 + MPMX19_00546 0.11 -0.4
560,952 + MPMX19_00546 0.11 -0.8
560,952 + MPMX19_00546 0.11 -0.9
560,952 + MPMX19_00546 0.11 -0.7
560,952 + MPMX19_00546 0.11 +0.7
560,952 + MPMX19_00546 0.11 -0.2
560,952 + MPMX19_00546 0.11 +0.1
560,952 + MPMX19_00546 0.11 -0.1
560,952 + MPMX19_00546 0.11 -0.9
560,952 + MPMX19_00546 0.11 -0.0
560,952 + MPMX19_00546 0.11 +0.6
560,952 + MPMX19_00546 0.11 +0.6
560,952 + MPMX19_00546 0.11 -0.8
560,952 + MPMX19_00546 0.11 -1.2
560,953 - MPMX19_00546 0.11 +0.2
560,953 - MPMX19_00546 0.11 -0.2
560,953 - MPMX19_00546 0.11 -0.6
560,953 - MPMX19_00546 0.11 -2.3
560,953 - MPMX19_00546 0.11 -1.6
560,953 - MPMX19_00546 0.11 +0.1
560,953 - MPMX19_00546 0.11 -0.2
560,953 - MPMX19_00546 0.11 -0.3
560,953 - MPMX19_00546 0.11 +0.4
560,953 - MPMX19_00546 0.11 -0.6
560,953 - MPMX19_00546 0.11 +0.4
560,953 - MPMX19_00546 0.11 -0.3
560,953 - MPMX19_00546 0.11 -0.3
560,953 - MPMX19_00546 0.11 -0.2
560,953 - MPMX19_00546 0.11 -1.1
560,953 - MPMX19_00546 0.11 -2.2
560,953 - MPMX19_00546 0.11 -0.1
560,953 - MPMX19_00546 0.11 -0.6
561,041 + MPMX19_00546 0.25 +0.4
561,165 + MPMX19_00546 0.45 +0.4
561,165 + MPMX19_00546 0.45 +0.4
561,165 + MPMX19_00546 0.45 -0.6
561,165 + MPMX19_00546 0.45 +1.2
561,165 + MPMX19_00546 0.45 -0.3
561,165 + MPMX19_00546 0.45 -0.9
561,165 + MPMX19_00546 0.45 -0.1
561,165 + MPMX19_00546 0.45 -0.9
561,165 + MPMX19_00546 0.45 -1.0
561,165 + MPMX19_00546 0.45 -2.3
561,165 + MPMX19_00546 0.45 -0.6
561,165 + MPMX19_00546 0.45 -0.6
561,165 + MPMX19_00546 0.45 -0.6
561,165 + MPMX19_00546 0.45 +0.4
561,166 - MPMX19_00546 0.45 +0.4
561,166 - MPMX19_00546 0.45 +0.4
561,166 - MPMX19_00546 0.45 -1.0
561,166 - MPMX19_00546 0.45 +1.0
561,166 - MPMX19_00546 0.45 -1.8
561,166 - MPMX19_00546 0.45 -0.3
561,166 - MPMX19_00546 0.45 -0.5
561,166 - MPMX19_00546 0.45 +0.9
561,166 - MPMX19_00546 0.45 +0.7
561,166 - MPMX19_00546 0.45 +0.1
561,166 - MPMX19_00546 0.45 -0.2
561,166 - MPMX19_00546 0.45 +0.2
561,166 - MPMX19_00546 0.45 +0.4
561,166 - MPMX19_00546 0.45 -0.4
561,166 - MPMX19_00546 0.45 +1.3
561,439 - MPMX19_00546 0.89 -1.2
561,579 + MPMX19_00547 0.21 +0.8
561,580 - MPMX19_00547 0.21 +0.4
561,757 + -0.2
561,757 + -0.7
561,757 + -0.0
561,757 + -0.1
561,757 + +0.5
561,757 + -0.2
561,758 - -0.6
561,758 - +0.6
561,758 - -0.8
561,775 + +0.1
561,775 + -1.6
561,775 + -0.6
561,775 + -0.7
561,776 - -0.4
561,776 - -1.0
561,776 - -0.3
561,776 - -0.6
561,776 - -0.3
561,776 - +0.4
561,776 - -0.0
561,776 - +0.8
561,776 - +0.8
561,776 - -1.6
561,841 + -0.3
562,054 + -0.3
562,054 + -0.2
562,054 + +0.2
562,054 + -1.6
562,054 + -0.8
562,054 + +0.6
562,054 + -0.7
562,055 - -1.2
562,055 - +0.4
562,055 - -1.0
562,055 - -0.2
562,343 + MPMX19_00548 0.19 -0.2
562,343 + MPMX19_00548 0.19 +1.4
562,343 + MPMX19_00548 0.19 +0.1
562,343 + MPMX19_00548 0.19 -1.4
562,343 + MPMX19_00548 0.19 -1.2
562,343 + MPMX19_00548 0.19 +1.3
562,343 + MPMX19_00548 0.19 +1.4
562,343 + MPMX19_00548 0.19 -2.1
562,344 - MPMX19_00548 0.19 +0.4
562,344 - MPMX19_00548 0.19 +0.6
562,344 - MPMX19_00548 0.19 +0.1
562,344 - MPMX19_00548 0.19 +0.8
562,344 - MPMX19_00548 0.19 -0.2
562,344 - MPMX19_00548 0.19 +1.4
562,344 - MPMX19_00548 0.19 +0.6
562,344 - MPMX19_00548 0.19 +0.3
562,469 + MPMX19_00548 0.23 +0.8
562,469 + MPMX19_00548 0.23 +0.7
562,469 + MPMX19_00548 0.23 -0.6
562,469 + MPMX19_00548 0.23 -1.6
562,469 + MPMX19_00548 0.23 -0.8
562,469 + MPMX19_00548 0.23 -0.2
562,469 + MPMX19_00548 0.23 -0.3
562,469 + MPMX19_00548 0.23 +0.5
562,469 + MPMX19_00548 0.23 +0.0
562,469 + MPMX19_00548 0.23 -1.3
562,469 + MPMX19_00548 0.23 +1.1
562,469 + MPMX19_00548 0.23 +0.9
562,469 + MPMX19_00548 0.23 +0.8
562,469 + MPMX19_00548 0.23 +0.0
562,469 + MPMX19_00548 0.23 +0.3
562,469 + MPMX19_00548 0.23 -0.1
562,469 + MPMX19_00548 0.23 -0.5
562,469 + MPMX19_00548 0.23 +0.1
562,469 + MPMX19_00548 0.23 +0.4
562,470 - MPMX19_00548 0.23 +0.0
562,470 - MPMX19_00548 0.23 -0.5
562,470 - MPMX19_00548 0.23 +0.4
562,470 - MPMX19_00548 0.23 +0.4
562,470 - MPMX19_00548 0.23 -1.9
562,470 - MPMX19_00548 0.23 +0.0
562,470 - MPMX19_00548 0.23 +0.5
562,470 - MPMX19_00548 0.23 -0.4
562,470 - MPMX19_00548 0.23 +0.4
562,470 - MPMX19_00548 0.23 -1.2

Or see this region's nucleotide sequence