Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00109 and MPMX19_00110 are separated by 161 nucleotides MPMX19_00110 and MPMX19_00111 are separated by 515 nucleotides
MPMX19_00109: MPMX19_00109 - hypothetical protein, at 118,210 to 119,457
_00109
MPMX19_00110: MPMX19_00110 - hypothetical protein, at 119,619 to 120,527
_00110
MPMX19_00111: MPMX19_00111 - Lysine--tRNA ligase, at 121,043 to 122,611
_00111
Position (kb)
119
120
121 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 119.360 kb on + strand at 119.360 kb on + strand at 119.360 kb on + strand at 119.360 kb on + strand at 119.360 kb on + strand at 119.360 kb on + strand at 119.360 kb on + strand at 119.360 kb on + strand at 119.360 kb on + strand at 119.360 kb on + strand at 119.361 kb on - strand at 119.361 kb on - strand at 119.361 kb on - strand at 119.361 kb on - strand at 119.361 kb on - strand at 119.361 kb on - strand at 119.361 kb on - strand at 119.361 kb on - strand at 119.361 kb on - strand at 119.554 kb on + strand at 119.554 kb on + strand at 119.554 kb on + strand at 119.554 kb on + strand at 119.554 kb on + strand at 119.785 kb on + strand, within MPMX19_00110 at 119.785 kb on + strand, within MPMX19_00110 at 119.785 kb on + strand, within MPMX19_00110 at 119.785 kb on + strand, within MPMX19_00110 at 119.786 kb on - strand, within MPMX19_00110 at 119.786 kb on - strand, within MPMX19_00110 at 119.786 kb on - strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.112 kb on + strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.113 kb on - strand, within MPMX19_00110 at 120.597 kb on + strand at 120.609 kb on + strand at 120.609 kb on + strand at 120.613 kb on + strand at 120.734 kb on + strand at 120.734 kb on + strand at 120.735 kb on - strand at 120.735 kb on - strand at 120.735 kb on - strand at 120.739 kb on + strand at 120.739 kb on + strand at 120.740 kb on - strand at 120.740 kb on - strand at 120.740 kb on - strand at 120.767 kb on + strand at 120.782 kb on + strand at 120.783 kb on - strand at 120.805 kb on + strand at 120.843 kb on + strand at 120.855 kb on + strand at 120.858 kb on + strand at 120.858 kb on + strand at 120.858 kb on + strand at 120.859 kb on - strand at 120.859 kb on - strand at 120.881 kb on + strand at 120.881 kb on + strand at 120.882 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 119,360 + -0.1 119,360 + +0.9 119,360 + -1.9 119,360 + -0.1 119,360 + +0.5 119,360 + -0.5 119,360 + -0.4 119,360 + -0.5 119,360 + +1.5 119,360 + +1.2 119,361 - +0.2 119,361 - -0.5 119,361 - -1.1 119,361 - -0.5 119,361 - +0.1 119,361 - -0.1 119,361 - -0.1 119,361 - -0.3 119,361 - +0.2 119,554 + -1.9 119,554 + +0.0 119,554 + -1.1 119,554 + +0.0 119,554 + -0.6 119,785 + MPMX19_00110 0.18 +0.5 119,785 + MPMX19_00110 0.18 -0.1 119,785 + MPMX19_00110 0.18 -0.4 119,785 + MPMX19_00110 0.18 +0.0 119,786 - MPMX19_00110 0.18 +1.0 119,786 - MPMX19_00110 0.18 -0.5 119,786 - MPMX19_00110 0.18 -1.1 120,112 + MPMX19_00110 0.54 -0.1 120,112 + MPMX19_00110 0.54 -0.1 120,112 + MPMX19_00110 0.54 +0.0 120,112 + MPMX19_00110 0.54 -1.1 120,112 + MPMX19_00110 0.54 +0.5 120,112 + MPMX19_00110 0.54 +0.7 120,112 + MPMX19_00110 0.54 -0.3 120,112 + MPMX19_00110 0.54 +0.5 120,112 + MPMX19_00110 0.54 +0.2 120,112 + MPMX19_00110 0.54 -0.8 120,112 + MPMX19_00110 0.54 -0.8 120,112 + MPMX19_00110 0.54 -0.9 120,112 + MPMX19_00110 0.54 +1.5 120,112 + MPMX19_00110 0.54 +0.5 120,112 + MPMX19_00110 0.54 +0.5 120,112 + MPMX19_00110 0.54 -0.4 120,112 + MPMX19_00110 0.54 +0.9 120,113 - MPMX19_00110 0.54 -0.9 120,113 - MPMX19_00110 0.54 +0.1 120,113 - MPMX19_00110 0.54 -0.1 120,113 - MPMX19_00110 0.54 +0.1 120,113 - MPMX19_00110 0.54 +0.7 120,113 - MPMX19_00110 0.54 -0.1 120,113 - MPMX19_00110 0.54 -1.3 120,113 - MPMX19_00110 0.54 +0.5 120,113 - MPMX19_00110 0.54 -0.5 120,113 - MPMX19_00110 0.54 -0.7 120,113 - MPMX19_00110 0.54 +1.1 120,113 - MPMX19_00110 0.54 +1.6 120,113 - MPMX19_00110 0.54 +0.3 120,113 - MPMX19_00110 0.54 -1.7 120,113 - MPMX19_00110 0.54 +1.2 120,113 - MPMX19_00110 0.54 -1.3 120,113 - MPMX19_00110 0.54 -0.5 120,113 - MPMX19_00110 0.54 +0.8 120,597 + -0.3 120,609 + -0.5 120,609 + -0.9 120,613 + -2.3 120,734 + +0.9 120,734 + +0.0 120,735 - +2.0 120,735 - +1.5 120,735 - -1.5 120,739 + +1.5 120,739 + -1.1 120,740 - -0.3 120,740 - +1.0 120,740 - -0.5 120,767 + +0.8 120,782 + +0.9 120,783 - -0.5 120,805 + -0.6 120,843 + -0.3 120,855 + +1.0 120,858 + -0.3 120,858 + -0.8 120,858 + -0.9 120,859 - -1.9 120,859 - +0.1 120,881 + -0.3 120,881 + +0.5 120,882 - -0.5
Or see this region's nucleotide sequence