Strain Fitness in Escherichia coli ECRC101 around MCAODC_24625

Experiment: WM_Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsulA and ompA are separated by 356 nucleotidesompA and matP are separated by 74 nucleotidesmatP and ycbZ are separated by 185 nucleotides MCAODC_24620: sulA - cell division inhibitor SulA, at 1,630,323 to 1,630,832 sulA MCAODC_24625: ompA - outer membrane protein A, at 1,631,189 to 1,632,229 ompA MCAODC_24630: matP - macrodomain Ter protein MatP, at 1,632,304 to 1,632,756 matP MCAODC_24635: ycbZ - Putative Lon protease-like protein, at 1,632,942 to 1,634,702 ycbZ Position (kb) 1631 1632 1633Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1630.205 kb on - strandat 1630.254 kb on - strandat 1630.287 kb on - strandat 1630.322 kb on + strandat 1630.322 kb on + strandat 1630.322 kb on + strandat 1630.322 kb on + strandat 1630.323 kb on - strandat 1630.323 kb on - strandat 1630.323 kb on - strandat 1630.323 kb on - strandat 1630.323 kb on - strandat 1630.323 kb on - strandat 1630.323 kb on - strandat 1630.326 kb on + strandat 1630.338 kb on + strandat 1630.468 kb on + strand, within sulAat 1630.484 kb on - strand, within sulAat 1630.523 kb on - strand, within sulAat 1630.585 kb on + strand, within sulAat 1630.656 kb on + strand, within sulAat 1630.657 kb on - strand, within sulAat 1630.657 kb on - strand, within sulAat 1630.751 kb on + strand, within sulAat 1630.752 kb on - strand, within sulAat 1630.752 kb on - strand, within sulAat 1630.755 kb on - strand, within sulAat 1630.755 kb on - strand, within sulAat 1630.804 kb on + strandat 1630.969 kb on + strandat 1630.976 kb on - strandat 1630.976 kb on - strandat 1630.980 kb on + strandat 1630.980 kb on + strandat 1630.980 kb on + strandat 1630.980 kb on + strandat 1630.982 kb on + strandat 1630.982 kb on + strandat 1630.982 kb on + strandat 1630.982 kb on + strandat 1631.036 kb on + strandat 1631.050 kb on + strandat 1631.050 kb on + strandat 1631.050 kb on + strandat 1631.051 kb on - strandat 1631.073 kb on + strandat 1631.096 kb on + strandat 1631.096 kb on + strandat 1631.127 kb on + strandat 1631.136 kb on + strandat 1631.161 kb on + strandat 1631.263 kb on + strandat 1631.263 kb on + strandat 1631.263 kb on + strandat 1631.263 kb on + strandat 1631.273 kb on + strandat 1631.273 kb on + strandat 1631.284 kb on + strandat 1631.284 kb on + strandat 1631.284 kb on + strandat 1631.284 kb on + strandat 1631.393 kb on + strand, within ompAat 1631.424 kb on + strand, within ompAat 1631.431 kb on + strand, within ompAat 1631.431 kb on + strand, within ompAat 1631.465 kb on + strand, within ompAat 1631.465 kb on + strand, within ompAat 1631.465 kb on + strand, within ompAat 1631.465 kb on + strand, within ompAat 1631.465 kb on + strand, within ompAat 1631.465 kb on + strand, within ompAat 1631.465 kb on + strand, within ompAat 1631.531 kb on + strand, within ompAat 1631.531 kb on + strand, within ompAat 1631.531 kb on + strand, within ompAat 1631.531 kb on + strand, within ompAat 1631.531 kb on + strand, within ompAat 1631.531 kb on + strand, within ompAat 1631.532 kb on - strand, within ompAat 1631.532 kb on - strand, within ompAat 1631.553 kb on + strand, within ompAat 1631.784 kb on + strand, within ompAat 1631.784 kb on + strand, within ompAat 1631.912 kb on + strand, within ompAat 1631.952 kb on + strand, within ompAat 1631.966 kb on + strand, within ompAat 1631.993 kb on + strand, within ompAat 1632.038 kb on + strand, within ompAat 1632.085 kb on + strand, within ompAat 1632.085 kb on + strand, within ompAat 1632.190 kb on + strandat 1632.210 kb on + strandat 1632.227 kb on + strandat 1632.227 kb on + strandat 1632.227 kb on + strandat 1632.227 kb on + strandat 1632.228 kb on - strandat 1632.362 kb on + strand, within matPat 1632.492 kb on + strand, within matPat 1632.493 kb on - strand, within matPat 1632.511 kb on - strand, within matPat 1632.575 kb on - strand, within matPat 1632.596 kb on - strand, within matPat 1632.662 kb on - strand, within matPat 1632.662 kb on - strand, within matPat 1632.662 kb on - strand, within matPat 1632.662 kb on - strand, within matPat 1632.787 kb on - strandat 1632.861 kb on - strandat 1632.861 kb on - strandat 1632.876 kb on + strandat 1632.877 kb on - strandat 1633.116 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas09
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1,630,205 - +0.2
1,630,254 - -1.1
1,630,287 - +0.2
1,630,322 + +1.7
1,630,322 + -0.1
1,630,322 + -0.8
1,630,322 + +0.2
1,630,323 - -0.8
1,630,323 - +0.1
1,630,323 - +1.0
1,630,323 - +0.4
1,630,323 - -1.1
1,630,323 - -2.4
1,630,323 - -1.6
1,630,326 + +0.6
1,630,338 + +1.8
1,630,468 + sulA MCAODC_24620 0.28 +0.4
1,630,484 - sulA MCAODC_24620 0.32 +0.6
1,630,523 - sulA MCAODC_24620 0.39 +0.1
1,630,585 + sulA MCAODC_24620 0.51 +1.2
1,630,656 + sulA MCAODC_24620 0.65 +1.7
1,630,657 - sulA MCAODC_24620 0.65 +0.2
1,630,657 - sulA MCAODC_24620 0.65 +0.4
1,630,751 + sulA MCAODC_24620 0.84 -0.3
1,630,752 - sulA MCAODC_24620 0.84 -0.4
1,630,752 - sulA MCAODC_24620 0.84 -0.3
1,630,755 - sulA MCAODC_24620 0.85 -0.1
1,630,755 - sulA MCAODC_24620 0.85 +1.0
1,630,804 + +1.0
1,630,969 + -2.5
1,630,976 - +1.0
1,630,976 - -0.5
1,630,980 + +0.4
1,630,980 + +0.8
1,630,980 + -0.9
1,630,980 + +1.6
1,630,982 + +0.3
1,630,982 + +0.2
1,630,982 + +0.2
1,630,982 + -1.9
1,631,036 + -0.5
1,631,050 + +0.4
1,631,050 + +0.9
1,631,050 + -0.5
1,631,051 - -2.3
1,631,073 + +0.6
1,631,096 + +1.2
1,631,096 + +0.4
1,631,127 + -0.1
1,631,136 + -0.2
1,631,161 + +1.2
1,631,263 + -1.4
1,631,263 + +0.4
1,631,263 + +1.0
1,631,263 + +1.8
1,631,273 + +1.7
1,631,273 + +0.5
1,631,284 + +0.3
1,631,284 + -2.1
1,631,284 + +1.3
1,631,284 + +0.7
1,631,393 + ompA MCAODC_24625 0.20 -0.2
1,631,424 + ompA MCAODC_24625 0.23 -1.3
1,631,431 + ompA MCAODC_24625 0.23 -0.3
1,631,431 + ompA MCAODC_24625 0.23 +1.1
1,631,465 + ompA MCAODC_24625 0.27 +1.5
1,631,465 + ompA MCAODC_24625 0.27 -2.1
1,631,465 + ompA MCAODC_24625 0.27 +0.4
1,631,465 + ompA MCAODC_24625 0.27 +0.1
1,631,465 + ompA MCAODC_24625 0.27 +1.0
1,631,465 + ompA MCAODC_24625 0.27 -0.9
1,631,465 + ompA MCAODC_24625 0.27 +0.3
1,631,531 + ompA MCAODC_24625 0.33 -2.5
1,631,531 + ompA MCAODC_24625 0.33 -1.0
1,631,531 + ompA MCAODC_24625 0.33 +1.1
1,631,531 + ompA MCAODC_24625 0.33 -1.0
1,631,531 + ompA MCAODC_24625 0.33 -0.1
1,631,531 + ompA MCAODC_24625 0.33 -0.3
1,631,532 - ompA MCAODC_24625 0.33 +1.3
1,631,532 - ompA MCAODC_24625 0.33 +4.5
1,631,553 + ompA MCAODC_24625 0.35 +0.5
1,631,784 + ompA MCAODC_24625 0.57 -2.0
1,631,784 + ompA MCAODC_24625 0.57 +1.9
1,631,912 + ompA MCAODC_24625 0.69 +1.7
1,631,952 + ompA MCAODC_24625 0.73 +0.3
1,631,966 + ompA MCAODC_24625 0.75 -2.4
1,631,993 + ompA MCAODC_24625 0.77 +0.5
1,632,038 + ompA MCAODC_24625 0.82 +0.8
1,632,085 + ompA MCAODC_24625 0.86 +0.3
1,632,085 + ompA MCAODC_24625 0.86 +0.7
1,632,190 + -0.6
1,632,210 + +0.5
1,632,227 + -0.3
1,632,227 + -1.2
1,632,227 + +1.9
1,632,227 + +0.0
1,632,228 - -0.9
1,632,362 + matP MCAODC_24630 0.13 +0.1
1,632,492 + matP MCAODC_24630 0.42 -1.6
1,632,493 - matP MCAODC_24630 0.42 +0.3
1,632,511 - matP MCAODC_24630 0.46 +4.4
1,632,575 - matP MCAODC_24630 0.60 -0.4
1,632,596 - matP MCAODC_24630 0.64 +0.9
1,632,662 - matP MCAODC_24630 0.79 +0.6
1,632,662 - matP MCAODC_24630 0.79 -0.1
1,632,662 - matP MCAODC_24630 0.79 +0.0
1,632,662 - matP MCAODC_24630 0.79 +0.2
1,632,787 - -0.1
1,632,861 - +0.6
1,632,861 - +0.9
1,632,876 + +1.0
1,632,877 - +1.2
1,633,116 - -2.2

Or see this region's nucleotide sequence