Strain Fitness in Escherichia coli ECRC101 around MCAODC_24345

Experiment: WM_Bas09

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntnu1 and MCAODC_24345 are separated by 750 nucleotidesMCAODC_24345 and MCAODC_24350 are separated by 255 nucleotidesMCAODC_24350 and MCAODC_24355 are separated by 159 nucleotides MCAODC_24340: nu1 - Prophage Qin DNA packaging protein NU1-like protein, at 1,593,089 to 1,593,364 nu1 MCAODC_24345: MCAODC_24345 - holin, at 1,594,115 to 1,594,321 _24345 MCAODC_24350: MCAODC_24350 - hypothetical protein, at 1,594,577 to 1,594,849 _24350 MCAODC_24355: MCAODC_24355 - SAR-endolysin, at 1,595,009 to 1,595,542 _24355 Position (kb) 1594 1595Strain fitness (log2 ratio) -2 -1 0 1 2at 1593.799 kb on - strandat 1593.810 kb on - strandat 1593.810 kb on - strandat 1593.939 kb on + strandat 1593.939 kb on + strandat 1593.951 kb on + strandat 1593.951 kb on + strandat 1594.319 kb on + strandat 1594.350 kb on + strandat 1594.351 kb on - strandat 1594.365 kb on + strandat 1594.462 kb on + strandat 1594.595 kb on + strandat 1594.596 kb on - strandat 1594.599 kb on - strandat 1594.661 kb on + strand, within MCAODC_24350at 1594.661 kb on + strand, within MCAODC_24350at 1594.661 kb on + strand, within MCAODC_24350at 1594.661 kb on + strand, within MCAODC_24350at 1594.662 kb on - strand, within MCAODC_24350at 1594.687 kb on + strand, within MCAODC_24350at 1594.691 kb on - strand, within MCAODC_24350at 1594.733 kb on - strand, within MCAODC_24350at 1594.736 kb on - strand, within MCAODC_24350at 1594.804 kb on + strand, within MCAODC_24350at 1594.824 kb on - strandat 1594.851 kb on - strandat 1594.893 kb on + strandat 1594.894 kb on - strandat 1594.894 kb on - strandat 1594.934 kb on + strandat 1594.935 kb on - strandat 1594.935 kb on - strandat 1594.966 kb on + strandat 1594.966 kb on + strandat 1594.967 kb on - strandat 1594.968 kb on + strandat 1594.970 kb on + strandat 1594.975 kb on - strandat 1594.979 kb on + strandat 1595.189 kb on - strand, within MCAODC_24355at 1595.198 kb on - strand, within MCAODC_24355

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas09
remove
1,593,799 - +0.2
1,593,810 - +0.3
1,593,810 - -0.9
1,593,939 + +1.3
1,593,939 + +0.2
1,593,951 + +2.2
1,593,951 + -0.5
1,594,319 + +0.6
1,594,350 + -0.7
1,594,351 - -1.5
1,594,365 + +0.3
1,594,462 + +0.7
1,594,595 + -0.3
1,594,596 - -1.4
1,594,599 - +1.9
1,594,661 + MCAODC_24350 0.31 +1.1
1,594,661 + MCAODC_24350 0.31 -0.5
1,594,661 + MCAODC_24350 0.31 +2.5
1,594,661 + MCAODC_24350 0.31 -1.5
1,594,662 - MCAODC_24350 0.31 -2.0
1,594,687 + MCAODC_24350 0.40 +1.5
1,594,691 - MCAODC_24350 0.42 +1.8
1,594,733 - MCAODC_24350 0.57 +1.0
1,594,736 - MCAODC_24350 0.58 +0.4
1,594,804 + MCAODC_24350 0.83 +0.0
1,594,824 - -1.6
1,594,851 - -0.1
1,594,893 + +0.9
1,594,894 - +1.4
1,594,894 - +1.3
1,594,934 + -1.5
1,594,935 - -1.6
1,594,935 - -0.5
1,594,966 + -1.3
1,594,966 + -0.9
1,594,967 - +2.0
1,594,968 + -0.6
1,594,970 + -0.9
1,594,975 - +0.5
1,594,979 + +1.2
1,595,189 - MCAODC_24355 0.34 +0.4
1,595,198 - MCAODC_24355 0.35 -0.6

Or see this region's nucleotide sequence