Strain Fitness in Escherichia coli ECRC101 around MCAODC_23585

Experiment: WM_Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_23585 and MCAODC_23590 are separated by 871 nucleotides MCAODC_23585: MCAODC_23585 - Membrane protein, at 1,441,635 to 1,442,306 _23585 MCAODC_23590: MCAODC_23590 - Hok/Gef family protein, at 1,443,178 to 1,443,318 _23590 Position (kb) 1441 1442 1443Strain fitness (log2 ratio) -2 -1 0 1 2at 1440.730 kb on + strandat 1440.737 kb on - strandat 1440.760 kb on + strandat 1440.761 kb on - strandat 1440.761 kb on - strandat 1440.761 kb on - strandat 1440.761 kb on - strandat 1440.946 kb on - strandat 1441.004 kb on + strandat 1441.005 kb on - strandat 1441.234 kb on - strandat 1441.234 kb on - strandat 1441.281 kb on - strandat 1441.281 kb on - strandat 1441.289 kb on - strandat 1441.431 kb on - strandat 1441.517 kb on - strandat 1441.527 kb on - strandat 1441.572 kb on + strandat 1441.572 kb on + strandat 1442.014 kb on - strand, within MCAODC_23585at 1442.238 kb on + strand, within MCAODC_23585at 1442.601 kb on + strandat 1442.606 kb on - strandat 1442.932 kb on + strandat 1442.932 kb on + strandat 1442.932 kb on + strandat 1442.932 kb on + strandat 1442.932 kb on + strandat 1442.933 kb on - strandat 1442.933 kb on - strandat 1442.933 kb on - strandat 1442.933 kb on - strandat 1442.933 kb on - strandat 1442.998 kb on + strandat 1443.286 kb on + strand, within MCAODC_23590at 1443.287 kb on - strand, within MCAODC_23590at 1443.287 kb on - strand, within MCAODC_23590

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas09
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1,440,730 + +1.1
1,440,737 - +1.9
1,440,760 + -1.1
1,440,761 - -0.6
1,440,761 - -0.8
1,440,761 - +1.3
1,440,761 - +1.0
1,440,946 - +0.3
1,441,004 + -0.2
1,441,005 - +1.0
1,441,234 - -0.1
1,441,234 - +1.3
1,441,281 - -0.1
1,441,281 - +0.9
1,441,289 - +2.2
1,441,431 - -0.1
1,441,517 - -1.9
1,441,527 - -1.2
1,441,572 + -0.4
1,441,572 + +2.2
1,442,014 - MCAODC_23585 0.56 -0.6
1,442,238 + MCAODC_23585 0.90 -0.1
1,442,601 + -0.2
1,442,606 - +1.3
1,442,932 + -0.9
1,442,932 + +0.7
1,442,932 + +0.9
1,442,932 + +0.8
1,442,932 + -0.3
1,442,933 - +0.1
1,442,933 - +0.4
1,442,933 - +0.9
1,442,933 - +0.4
1,442,933 - +1.4
1,442,998 + +0.3
1,443,286 + MCAODC_23590 0.77 -1.5
1,443,287 - MCAODC_23590 0.77 +0.4
1,443,287 - MCAODC_23590 0.77 -0.0

Or see this region's nucleotide sequence