Strain Fitness in Escherichia coli ECRC101 around MCAODC_17870

Experiment: WM_Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrsxC and rsxD are separated by 0 nucleotidesrsxD and rsxG are separated by 3 nucleotidesrsxG and rsxE are separated by 3 nucleotides MCAODC_17865: rsxC - electron transport complex subunit RsxC, at 435,819 to 438,137 rsxC MCAODC_17870: rsxD - electron transport complex subunit RsxD, at 438,138 to 439,196 rsxD MCAODC_17875: rsxG - electron transport complex subunit RsxG, at 439,200 to 439,820 rsxG MCAODC_17880: rsxE - electron transport complex subunit RsxE, at 439,824 to 440,519 rsxE Position (kb) 438 439 440Strain fitness (log2 ratio) -2 -1 0 1 2at 437.285 kb on + strand, within rsxCat 437.340 kb on - strand, within rsxCat 437.348 kb on + strand, within rsxCat 437.349 kb on - strand, within rsxCat 437.390 kb on + strand, within rsxCat 437.391 kb on - strand, within rsxCat 437.453 kb on + strand, within rsxCat 437.453 kb on + strand, within rsxCat 437.453 kb on + strand, within rsxCat 437.642 kb on + strand, within rsxCat 438.165 kb on + strandat 438.166 kb on - strandat 438.197 kb on + strandat 438.328 kb on + strand, within rsxDat 438.329 kb on - strand, within rsxDat 438.362 kb on + strand, within rsxDat 438.362 kb on + strand, within rsxDat 438.362 kb on + strand, within rsxDat 438.397 kb on + strand, within rsxDat 438.402 kb on - strand, within rsxDat 438.402 kb on - strand, within rsxDat 438.474 kb on + strand, within rsxDat 438.613 kb on + strand, within rsxDat 438.653 kb on + strand, within rsxDat 438.664 kb on + strand, within rsxDat 438.707 kb on + strand, within rsxDat 438.752 kb on + strand, within rsxDat 438.806 kb on - strand, within rsxDat 438.841 kb on + strand, within rsxDat 438.841 kb on + strand, within rsxDat 438.842 kb on - strand, within rsxDat 438.883 kb on + strand, within rsxDat 438.886 kb on + strand, within rsxDat 439.066 kb on + strand, within rsxDat 439.066 kb on + strand, within rsxDat 439.066 kb on + strand, within rsxDat 439.158 kb on + strandat 439.229 kb on + strandat 439.241 kb on - strandat 439.265 kb on - strand, within rsxGat 439.333 kb on + strand, within rsxGat 439.362 kb on + strand, within rsxGat 439.389 kb on + strand, within rsxGat 439.743 kb on - strand, within rsxGat 439.818 kb on + strandat 439.959 kb on - strand, within rsxEat 440.037 kb on + strand, within rsxE

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas09
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437,285 + rsxC MCAODC_17865 0.63 -0.3
437,340 - rsxC MCAODC_17865 0.66 -1.2
437,348 + rsxC MCAODC_17865 0.66 +1.4
437,349 - rsxC MCAODC_17865 0.66 +0.6
437,390 + rsxC MCAODC_17865 0.68 -0.7
437,391 - rsxC MCAODC_17865 0.68 -1.6
437,453 + rsxC MCAODC_17865 0.70 -0.0
437,453 + rsxC MCAODC_17865 0.70 -1.1
437,453 + rsxC MCAODC_17865 0.70 +0.9
437,642 + rsxC MCAODC_17865 0.79 -0.7
438,165 + +0.5
438,166 - -1.3
438,197 + +1.3
438,328 + rsxD MCAODC_17870 0.18 +0.3
438,329 - rsxD MCAODC_17870 0.18 +2.0
438,362 + rsxD MCAODC_17870 0.21 -0.5
438,362 + rsxD MCAODC_17870 0.21 -0.8
438,362 + rsxD MCAODC_17870 0.21 -1.0
438,397 + rsxD MCAODC_17870 0.24 -1.9
438,402 - rsxD MCAODC_17870 0.25 -1.8
438,402 - rsxD MCAODC_17870 0.25 -2.3
438,474 + rsxD MCAODC_17870 0.32 -1.6
438,613 + rsxD MCAODC_17870 0.45 -1.6
438,653 + rsxD MCAODC_17870 0.49 -0.0
438,664 + rsxD MCAODC_17870 0.50 -0.0
438,707 + rsxD MCAODC_17870 0.54 +0.6
438,752 + rsxD MCAODC_17870 0.58 -0.0
438,806 - rsxD MCAODC_17870 0.63 -0.5
438,841 + rsxD MCAODC_17870 0.66 -0.4
438,841 + rsxD MCAODC_17870 0.66 -0.6
438,842 - rsxD MCAODC_17870 0.66 -0.9
438,883 + rsxD MCAODC_17870 0.70 -1.7
438,886 + rsxD MCAODC_17870 0.71 -1.7
439,066 + rsxD MCAODC_17870 0.88 +0.2
439,066 + rsxD MCAODC_17870 0.88 +0.7
439,066 + rsxD MCAODC_17870 0.88 -0.4
439,158 + +0.5
439,229 + +1.7
439,241 - -1.5
439,265 - rsxG MCAODC_17875 0.10 -1.5
439,333 + rsxG MCAODC_17875 0.21 +0.7
439,362 + rsxG MCAODC_17875 0.26 -0.6
439,389 + rsxG MCAODC_17875 0.30 +0.3
439,743 - rsxG MCAODC_17875 0.87 -2.1
439,818 + -2.4
439,959 - rsxE MCAODC_17880 0.19 +0.6
440,037 + rsxE MCAODC_17880 0.31 +0.5

Or see this region's nucleotide sequence