Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt psuT and yeiL are separated by 70 nucleotides yeiL and rihB are separated by 129 nucleotides
MCAODC_14510: psuT - Putative pseudouridine transporter, at 2,855,457 to 2,856,707
psuT
MCAODC_14515: yeiL - Regulatory protein YeiL, at 2,856,778 to 2,857,476
yeiL
MCAODC_14520: rihB - ribosylpyrimidine nucleosidase, at 2,857,606 to 2,858,547
rihB
Position (kb)
2856
2857
2858 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2855.803 kb on - strand, within psuT at 2855.805 kb on + strand, within psuT at 2855.939 kb on + strand, within psuT at 2855.979 kb on - strand, within psuT at 2856.031 kb on - strand, within psuT at 2856.046 kb on + strand, within psuT at 2856.057 kb on + strand, within psuT at 2856.058 kb on - strand, within psuT at 2856.111 kb on - strand, within psuT at 2856.117 kb on - strand, within psuT at 2856.273 kb on - strand, within psuT at 2856.293 kb on + strand, within psuT at 2856.560 kb on + strand, within psuT at 2857.108 kb on + strand, within yeiL at 2857.275 kb on + strand, within yeiL at 2857.275 kb on + strand, within yeiL at 2857.508 kb on + strand at 2857.513 kb on + strand at 2857.745 kb on + strand, within rihB at 2857.843 kb on - strand, within rihB at 2857.924 kb on + strand, within rihB at 2857.924 kb on + strand, within rihB at 2857.924 kb on + strand, within rihB at 2857.924 kb on + strand, within rihB at 2858.010 kb on + strand, within rihB at 2858.010 kb on + strand, within rihB at 2858.010 kb on + strand, within rihB at 2858.065 kb on + strand, within rihB at 2858.066 kb on - strand, within rihB at 2858.364 kb on + strand, within rihB at 2858.380 kb on + strand, within rihB at 2858.380 kb on + strand, within rihB at 2858.381 kb on - strand, within rihB at 2858.464 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 2,855,803 - psuT MCAODC_14510 0.28 -2.4 2,855,805 + psuT MCAODC_14510 0.28 +0.8 2,855,939 + psuT MCAODC_14510 0.39 +0.3 2,855,979 - psuT MCAODC_14510 0.42 -2.2 2,856,031 - psuT MCAODC_14510 0.46 +0.6 2,856,046 + psuT MCAODC_14510 0.47 +1.1 2,856,057 + psuT MCAODC_14510 0.48 +0.9 2,856,058 - psuT MCAODC_14510 0.48 -2.0 2,856,111 - psuT MCAODC_14510 0.52 +1.4 2,856,117 - psuT MCAODC_14510 0.53 +0.8 2,856,273 - psuT MCAODC_14510 0.65 +1.4 2,856,293 + psuT MCAODC_14510 0.67 -0.1 2,856,560 + psuT MCAODC_14510 0.88 +0.5 2,857,108 + yeiL MCAODC_14515 0.47 -1.4 2,857,275 + yeiL MCAODC_14515 0.71 +0.6 2,857,275 + yeiL MCAODC_14515 0.71 -0.2 2,857,508 + -0.3 2,857,513 + +0.7 2,857,745 + rihB MCAODC_14520 0.15 +2.0 2,857,843 - rihB MCAODC_14520 0.25 +0.7 2,857,924 + rihB MCAODC_14520 0.34 +0.5 2,857,924 + rihB MCAODC_14520 0.34 -2.7 2,857,924 + rihB MCAODC_14520 0.34 +0.8 2,857,924 + rihB MCAODC_14520 0.34 -0.6 2,858,010 + rihB MCAODC_14520 0.43 -1.7 2,858,010 + rihB MCAODC_14520 0.43 +0.3 2,858,010 + rihB MCAODC_14520 0.43 +1.0 2,858,065 + rihB MCAODC_14520 0.49 -0.8 2,858,066 - rihB MCAODC_14520 0.49 +0.0 2,858,364 + rihB MCAODC_14520 0.80 +0.1 2,858,380 + rihB MCAODC_14520 0.82 -0.5 2,858,380 + rihB MCAODC_14520 0.82 -1.2 2,858,381 - rihB MCAODC_14520 0.82 -1.5 2,858,464 - +0.3
Or see this region's nucleotide sequence