Strain Fitness in Escherichia coli ECRC101 around MCAODC_12090

Experiment: WM_Bas09

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_Bas09
2,390,347	+	yphB	MCAODC_12080	0.65	+0.8
2,390,347	+	yphB	MCAODC_12080	0.65	-0.1
2,390,430	+	yphB	MCAODC_12080	0.75	-1.4
2,390,430	+	yphB	MCAODC_12080	0.75	+0.8
2,390,431	-	yphB	MCAODC_12080	0.75	+0.1
2,390,469	+	yphB	MCAODC_12080	0.79	+0.2
2,390,470	-	yphB	MCAODC_12080	0.79	+0.0
2,390,509	-	yphB	MCAODC_12080	0.84	-0.0
2,390,651	+				-0.0
2,390,652	-				+0.3
2,390,666	-				-2.0
2,390,741	+	doxX	MCAODC_12085	0.11	+1.0
2,390,762	-	doxX	MCAODC_12085	0.16	+0.8
2,390,782	+	doxX	MCAODC_12085	0.20	+1.1
2,390,788	+	doxX	MCAODC_12085	0.22	+1.1
2,390,816	-	doxX	MCAODC_12085	0.28	-0.1
2,390,906	+	doxX	MCAODC_12085	0.50	-2.0
2,390,907	-	doxX	MCAODC_12085	0.50	-0.4
2,390,907	-	doxX	MCAODC_12085	0.50	-2.7
2,390,929	+	doxX	MCAODC_12085	0.55	-2.2
2,390,930	-	doxX	MCAODC_12085	0.55	-0.0
2,390,930	-	doxX	MCAODC_12085	0.55	-1.0
2,390,933	+	doxX	MCAODC_12085	0.56	+0.2
2,390,933	+	doxX	MCAODC_12085	0.56	+0.4
2,390,942	-	doxX	MCAODC_12085	0.58	+0.3
2,390,983	+	doxX	MCAODC_12085	0.68	+0.2
2,390,983	+	doxX	MCAODC_12085	0.68	-0.4
2,390,983	+	doxX	MCAODC_12085	0.68	-1.2
2,390,983	+	doxX	MCAODC_12085	0.68	-2.0
2,390,984	-	doxX	MCAODC_12085	0.68	+0.3
2,390,984	-	doxX	MCAODC_12085	0.68	-0.0
2,390,984	-	doxX	MCAODC_12085	0.68	-0.5
2,390,984	-	doxX	MCAODC_12085	0.68	-0.7
2,390,985	+	doxX	MCAODC_12085	0.68	-0.6
2,390,985	+	doxX	MCAODC_12085	0.68	+1.0
2,390,985	+	doxX	MCAODC_12085	0.68	-2.9
2,390,985	+	doxX	MCAODC_12085	0.68	+0.3
2,390,985	+	doxX	MCAODC_12085	0.68	-2.8
2,390,985	+	doxX	MCAODC_12085	0.68	+1.0
2,390,985	+	doxX	MCAODC_12085	0.68	+1.0
2,390,986	-	doxX	MCAODC_12085	0.69	+0.5
2,390,986	-	doxX	MCAODC_12085	0.69	+0.4
2,390,986	-	doxX	MCAODC_12085	0.69	+0.3
2,390,986	-	doxX	MCAODC_12085	0.69	-0.4
2,390,986	-	doxX	MCAODC_12085	0.69	+0.1
2,390,986	-	doxX	MCAODC_12085	0.69	+0.4
2,390,986	-	doxX	MCAODC_12085	0.69	-0.3
2,390,986	-	doxX	MCAODC_12085	0.69	-0.7
2,390,986	-	doxX	MCAODC_12085	0.69	+0.2
2,391,042	-	doxX	MCAODC_12085	0.82	+0.3
2,391,042	-	doxX	MCAODC_12085	0.82	+0.5
2,391,065	+	doxX	MCAODC_12085	0.87	+0.8
2,391,066	-	doxX	MCAODC_12085	0.87	-2.2
2,391,108	-				+0.6
2,391,108	-				-0.2
2,391,108	-				-0.5
2,391,138	+				+1.7
2,391,139	-				-3.1
2,391,139	-				+0.4
2,391,139	-				-0.5
2,391,149	-				+0.2
2,391,154	+				-0.2
2,391,155	-				-0.6
2,391,157	+				-1.0
2,391,157	+				+0.0
2,391,157	+				-2.1
2,391,157	+				-0.6
2,391,157	+				+0.6
2,391,158	-				+0.2
2,391,158	-				+0.4
2,391,169	+				+0.3
2,391,196	+				+1.1
2,391,203	+				-0.5
2,391,204	-				-0.7
2,391,216	+				+0.6
2,391,226	+				+0.8
2,391,226	+				-0.2
2,391,227	-				-0.9
2,391,338	-	hcaD	MCAODC_12090	0.10	+0.2
2,391,359	-	hcaD	MCAODC_12090	0.12	+0.5
2,391,428	-	hcaD	MCAODC_12090	0.18	+0.4
2,391,434	+	hcaD	MCAODC_12090	0.18	-0.8
2,391,435	-	hcaD	MCAODC_12090	0.18	-0.0
2,391,435	-	hcaD	MCAODC_12090	0.18	-0.1
2,391,435	-	hcaD	MCAODC_12090	0.18	-0.1
2,391,447	+	hcaD	MCAODC_12090	0.19	-2.2
2,391,447	+	hcaD	MCAODC_12090	0.19	+0.4
2,391,497	+	hcaD	MCAODC_12090	0.23	-2.2
2,391,560	+	hcaD	MCAODC_12090	0.29	-0.1
2,391,560	+	hcaD	MCAODC_12090	0.29	+1.2
2,391,561	-	hcaD	MCAODC_12090	0.29	-1.7
2,391,561	-	hcaD	MCAODC_12090	0.29	+0.1
2,391,561	-	hcaD	MCAODC_12090	0.29	+0.7
2,391,658	+	hcaD	MCAODC_12090	0.37	+0.3
2,391,659	-	hcaD	MCAODC_12090	0.37	-3.1
2,391,659	-	hcaD	MCAODC_12090	0.37	-0.7
2,391,659	-	hcaD	MCAODC_12090	0.37	+0.4
2,391,659	-	hcaD	MCAODC_12090	0.37	+0.5
2,391,661	+	hcaD	MCAODC_12090	0.37	-0.2
2,391,661	+	hcaD	MCAODC_12090	0.37	+0.5
2,391,662	-	hcaD	MCAODC_12090	0.37	+1.6
2,391,765	-	hcaD	MCAODC_12090	0.46	-0.0
2,391,840	-	hcaD	MCAODC_12090	0.52	+0.7
2,391,913	+	hcaD	MCAODC_12090	0.58	+0.4
2,391,913	+	hcaD	MCAODC_12090	0.58	+1.4
2,391,913	+	hcaD	MCAODC_12090	0.58	-1.0
2,391,913	+	hcaD	MCAODC_12090	0.58	-0.0
2,391,914	-	hcaD	MCAODC_12090	0.58	+0.6
2,391,914	-	hcaD	MCAODC_12090	0.58	+0.1
2,391,914	-	hcaD	MCAODC_12090	0.58	+0.9
2,391,914	-	hcaD	MCAODC_12090	0.58	+0.1
2,391,914	-	hcaD	MCAODC_12090	0.58	+0.2
2,391,914	-	hcaD	MCAODC_12090	0.58	-0.2
2,391,914	-	hcaD	MCAODC_12090	0.58	-0.3
2,391,956	-	hcaD	MCAODC_12090	0.62	+0.6
2,392,039	+	hcaD	MCAODC_12090	0.68	+0.7
2,392,101	-	hcaD	MCAODC_12090	0.74	-0.9
2,392,103	-	hcaD	MCAODC_12090	0.74	+1.1
2,392,103	-	hcaD	MCAODC_12090	0.74	+2.1
2,392,145	+	hcaD	MCAODC_12090	0.77	-1.2
2,392,145	+	hcaD	MCAODC_12090	0.77	+0.0
2,392,146	-	hcaD	MCAODC_12090	0.77	+0.5
2,392,146	-	hcaD	MCAODC_12090	0.77	+1.4
2,392,181	+	hcaD	MCAODC_12090	0.80	+0.2
2,392,293	+	hcaD	MCAODC_12090	0.90	+2.5
2,392,300	+				+0.7
2,392,397	-				-0.2
2,392,397	-				+1.4
2,392,421	-				+0.1
2,392,429	-				-1.2
2,392,429	-				-1.5
2,392,472	+				+0.4
2,392,473	-				-0.5
2,392,542	+	hcaB	MCAODC_12095	0.14	+0.4
2,392,542	+	hcaB	MCAODC_12095	0.14	+0.0
2,392,543	-	hcaB	MCAODC_12095	0.14	-0.9
2,392,543	-	hcaB	MCAODC_12095	0.14	+0.1
2,392,552	+	hcaB	MCAODC_12095	0.15	-1.0
2,392,587	-	hcaB	MCAODC_12095	0.20	-0.6
2,392,587	-	hcaB	MCAODC_12095	0.20	-0.4
2,392,678	+	hcaB	MCAODC_12095	0.31	+1.8
2,392,678	+	hcaB	MCAODC_12095	0.31	+0.7
2,392,707	-	hcaB	MCAODC_12095	0.34	-0.8
2,392,726	-	hcaB	MCAODC_12095	0.37	+0.7
2,392,742	-	hcaB	MCAODC_12095	0.39	-0.1
2,392,763	-	hcaB	MCAODC_12095	0.41	+0.6
2,392,881	+	hcaB	MCAODC_12095	0.56	-0.1
2,392,946	-	hcaB	MCAODC_12095	0.64	+0.3
2,392,946	-	hcaB	MCAODC_12095	0.64	+0.0
2,393,041	-	hcaB	MCAODC_12095	0.76	-0.3
2,393,080	+	hcaB	MCAODC_12095	0.80	-1.6
2,393,080	+	hcaB	MCAODC_12095	0.80	-0.7
2,393,081	-	hcaB	MCAODC_12095	0.80	-0.2
2,393,081	-	hcaB	MCAODC_12095	0.80	-0.0
2,393,081	-	hcaB	MCAODC_12095	0.80	-0.5
2,393,162	-				-0.0
2,393,255	-				+0.0
2,393,287	+	hcaC	MCAODC_12100	0.16	-1.6
2,393,288	-	hcaC	MCAODC_12100	0.16	-0.6
2,393,294	+	hcaC	MCAODC_12100	0.18	+1.2
2,393,294	+	hcaC	MCAODC_12100	0.18	+0.5
2,393,295	-	hcaC	MCAODC_12100	0.18	-0.5
2,393,326	+	hcaC	MCAODC_12100	0.28	-0.1
2,393,365	+	hcaC	MCAODC_12100	0.40	-0.4