Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt recN and nadK are separated by 85 nucleotides nadK and grpE are separated by 122 nucleotides grpE and MCAODC_11685 are separated by 54 nucleotides
MCAODC_11670: recN - DNA repair protein RecN, at 2,311,503 to 2,313,164
recN
MCAODC_11675: nadK - NAD(+) kinase, at 2,313,250 to 2,314,128
nadK
MCAODC_11680: grpE - nucleotide exchange factor GrpE, at 2,314,251 to 2,314,844
grpE
MCAODC_11685: MCAODC_11685 - CorB transporter, at 2,314,899 to 2,315,405
_11685
Position (kb)
2313
2314
2315 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2312.346 kb on - strand, within recN at 2312.360 kb on + strand, within recN at 2312.360 kb on + strand, within recN at 2312.360 kb on + strand, within recN at 2312.583 kb on + strand, within recN at 2312.629 kb on - strand, within recN at 2312.700 kb on + strand, within recN at 2312.700 kb on + strand, within recN at 2312.720 kb on - strand, within recN at 2312.760 kb on + strand, within recN at 2313.048 kb on + strand at 2313.048 kb on + strand at 2313.049 kb on - strand at 2313.049 kb on - strand at 2313.049 kb on - strand at 2313.056 kb on + strand at 2313.057 kb on - strand at 2313.063 kb on - strand at 2313.084 kb on + strand at 2313.084 kb on + strand at 2313.085 kb on - strand at 2313.085 kb on - strand at 2313.085 kb on - strand at 2313.085 kb on - strand at 2313.087 kb on + strand at 2313.088 kb on - strand at 2313.088 kb on - strand at 2313.088 kb on - strand at 2313.165 kb on - strand at 2313.165 kb on - strand at 2313.165 kb on - strand at 2313.197 kb on + strand at 2313.209 kb on + strand at 2313.210 kb on - strand at 2313.222 kb on + strand at 2313.223 kb on - strand at 2313.225 kb on - strand at 2313.226 kb on + strand at 2313.226 kb on + strand at 2314.202 kb on + strand at 2314.825 kb on + strand at 2314.860 kb on + strand at 2314.944 kb on + strand at 2314.945 kb on - strand at 2314.952 kb on + strand, within MCAODC_11685 at 2314.953 kb on - strand, within MCAODC_11685 at 2314.953 kb on - strand, within MCAODC_11685 at 2314.953 kb on - strand, within MCAODC_11685 at 2314.953 kb on - strand, within MCAODC_11685 at 2314.958 kb on + strand, within MCAODC_11685 at 2314.958 kb on + strand, within MCAODC_11685 at 2314.959 kb on - strand, within MCAODC_11685 at 2314.959 kb on - strand, within MCAODC_11685 at 2314.969 kb on - strand, within MCAODC_11685 at 2314.969 kb on - strand, within MCAODC_11685 at 2315.083 kb on - strand, within MCAODC_11685
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 2,312,346 - recN MCAODC_11670 0.51 -0.1 2,312,360 + recN MCAODC_11670 0.52 +0.9 2,312,360 + recN MCAODC_11670 0.52 +0.8 2,312,360 + recN MCAODC_11670 0.52 -2.1 2,312,583 + recN MCAODC_11670 0.65 +2.3 2,312,629 - recN MCAODC_11670 0.68 +0.5 2,312,700 + recN MCAODC_11670 0.72 +1.5 2,312,700 + recN MCAODC_11670 0.72 -1.0 2,312,720 - recN MCAODC_11670 0.73 -0.6 2,312,760 + recN MCAODC_11670 0.76 -1.8 2,313,048 + -1.3 2,313,048 + +0.6 2,313,049 - +0.0 2,313,049 - -1.1 2,313,049 - +0.7 2,313,056 + +0.2 2,313,057 - +0.5 2,313,063 - +0.5 2,313,084 + -1.1 2,313,084 + +0.7 2,313,085 - +0.6 2,313,085 - +0.6 2,313,085 - +1.5 2,313,085 - -2.3 2,313,087 + +1.1 2,313,088 - +2.3 2,313,088 - -1.6 2,313,088 - +0.2 2,313,165 - -1.5 2,313,165 - +0.7 2,313,165 - -0.3 2,313,197 + +0.7 2,313,209 + +1.4 2,313,210 - +0.4 2,313,222 + -1.7 2,313,223 - +0.9 2,313,225 - -0.7 2,313,226 + -3.0 2,313,226 + +0.3 2,314,202 + -1.3 2,314,825 + -1.3 2,314,860 + +0.5 2,314,944 + -1.9 2,314,945 - +0.7 2,314,952 + MCAODC_11685 0.10 +0.5 2,314,953 - MCAODC_11685 0.11 -0.0 2,314,953 - MCAODC_11685 0.11 +0.1 2,314,953 - MCAODC_11685 0.11 +1.2 2,314,953 - MCAODC_11685 0.11 -1.6 2,314,958 + MCAODC_11685 0.12 +0.5 2,314,958 + MCAODC_11685 0.12 -1.2 2,314,959 - MCAODC_11685 0.12 +0.1 2,314,959 - MCAODC_11685 0.12 +1.2 2,314,969 - MCAODC_11685 0.14 -1.4 2,314,969 - MCAODC_11685 0.14 -0.5 2,315,083 - MCAODC_11685 0.36 -0.9
Or see this region's nucleotide sequence