Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yqgE and gshB are separated by 39 nucleotides gshB and rsmE are separated by 12 nucleotides rsmE and endA are separated by 79 nucleotides endA and sprT are separated by 94 nucleotides
MCAODC_09790: yqgE - YqgE/AlgH family protein, at 1,949,798 to 1,950,433
yqgE
MCAODC_09795: gshB - glutathione synthase, at 1,950,473 to 1,951,420
gshB
MCAODC_09800: rsmE - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 1,951,433 to 1,952,164
rsmE
MCAODC_09805: endA - deoxyribonuclease I, at 1,952,244 to 1,952,951
endA
MCAODC_09810: sprT - SprT family zinc-dependent metalloprotease, at 1,953,046 to 1,953,501
sprT
Position (kb) 1951
1952
1953 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1950.462 kb on - strand at 1950.471 kb on + strand at 1950.472 kb on - strand at 1950.472 kb on - strand at 1950.474 kb on + strand at 1950.474 kb on + strand at 1950.474 kb on + strand at 1950.474 kb on + strand at 1950.475 kb on - strand at 1950.475 kb on - strand at 1950.482 kb on + strand at 1950.482 kb on + strand at 1950.506 kb on + strand at 1950.553 kb on + strand at 1950.553 kb on + strand at 1950.575 kb on - strand, within gshB at 1950.575 kb on - strand, within gshB at 1950.823 kb on - strand, within gshB at 1950.824 kb on - strand, within gshB at 1950.980 kb on + strand, within gshB at 1950.981 kb on - strand, within gshB at 1951.000 kb on + strand, within gshB at 1951.020 kb on - strand, within gshB at 1951.122 kb on + strand, within gshB at 1951.123 kb on - strand, within gshB at 1951.136 kb on - strand, within gshB at 1951.234 kb on - strand, within gshB at 1951.290 kb on + strand, within gshB at 1951.290 kb on + strand, within gshB at 1951.310 kb on - strand, within gshB at 1951.310 kb on - strand, within gshB at 1951.310 kb on - strand, within gshB at 1951.311 kb on + strand, within gshB at 1951.311 kb on + strand, within gshB at 1951.311 kb on + strand, within gshB at 1951.312 kb on - strand, within gshB at 1951.312 kb on - strand, within gshB at 1951.312 kb on - strand, within gshB at 1951.312 kb on - strand, within gshB at 1951.352 kb on - strand at 1951.422 kb on - strand at 1951.455 kb on - strand at 1951.460 kb on + strand at 1951.461 kb on - strand at 1951.461 kb on - strand at 1951.522 kb on + strand, within rsmE at 1951.536 kb on + strand, within rsmE at 1951.624 kb on + strand, within rsmE at 1951.624 kb on + strand, within rsmE at 1951.624 kb on + strand, within rsmE at 1951.624 kb on + strand, within rsmE at 1951.625 kb on - strand, within rsmE at 1951.625 kb on - strand, within rsmE at 1951.625 kb on - strand, within rsmE at 1951.625 kb on - strand, within rsmE at 1951.625 kb on - strand, within rsmE at 1951.637 kb on - strand, within rsmE at 1951.814 kb on - strand, within rsmE at 1951.843 kb on + strand, within rsmE at 1951.853 kb on + strand, within rsmE at 1951.882 kb on + strand, within rsmE at 1951.928 kb on - strand, within rsmE at 1951.928 kb on - strand, within rsmE at 1951.928 kb on - strand, within rsmE at 1952.003 kb on - strand, within rsmE at 1952.084 kb on - strand, within rsmE at 1952.084 kb on - strand, within rsmE at 1952.145 kb on + strand at 1952.146 kb on - strand at 1952.164 kb on + strand at 1952.164 kb on + strand at 1952.164 kb on + strand at 1952.164 kb on + strand at 1952.164 kb on + strand at 1952.164 kb on + strand at 1952.164 kb on + strand at 1952.165 kb on - strand at 1952.165 kb on - strand at 1952.165 kb on - strand at 1952.165 kb on - strand at 1952.165 kb on - strand at 1952.165 kb on - strand at 1952.165 kb on - strand at 1952.165 kb on - strand at 1952.199 kb on + strand at 1952.200 kb on - strand at 1952.240 kb on + strand at 1952.240 kb on + strand at 1952.240 kb on + strand at 1952.240 kb on + strand at 1952.240 kb on + strand at 1952.241 kb on - strand at 1952.241 kb on - strand at 1952.245 kb on + strand at 1952.246 kb on - strand at 1952.278 kb on + strand at 1952.278 kb on + strand at 1952.278 kb on + strand at 1952.279 kb on - strand at 1952.279 kb on - strand at 1952.279 kb on - strand at 1952.285 kb on + strand at 1952.299 kb on - strand at 1952.404 kb on + strand, within endA at 1952.404 kb on + strand, within endA at 1952.404 kb on + strand, within endA at 1952.418 kb on - strand, within endA at 1952.418 kb on - strand, within endA at 1952.419 kb on + strand, within endA at 1952.419 kb on + strand, within endA at 1952.419 kb on + strand, within endA at 1952.419 kb on + strand, within endA at 1952.419 kb on + strand, within endA at 1952.419 kb on + strand, within endA at 1952.419 kb on + strand, within endA at 1952.419 kb on + strand, within endA at 1952.419 kb on + strand, within endA at 1952.419 kb on + strand, within endA at 1952.420 kb on - strand, within endA at 1952.420 kb on - strand, within endA at 1952.420 kb on - strand, within endA at 1952.420 kb on - strand, within endA at 1952.420 kb on - strand, within endA at 1952.420 kb on - strand, within endA at 1952.420 kb on - strand, within endA at 1952.420 kb on - strand, within endA at 1952.420 kb on - strand, within endA at 1952.420 kb on - strand, within endA at 1952.420 kb on - strand, within endA at 1952.425 kb on + strand, within endA at 1952.426 kb on - strand, within endA at 1952.539 kb on + strand, within endA at 1952.539 kb on + strand, within endA at 1952.539 kb on + strand, within endA at 1952.540 kb on - strand, within endA at 1952.540 kb on - strand, within endA at 1952.543 kb on + strand, within endA at 1952.544 kb on - strand, within endA at 1952.544 kb on - strand, within endA at 1952.544 kb on - strand, within endA at 1952.592 kb on - strand, within endA at 1952.597 kb on + strand, within endA at 1952.598 kb on - strand, within endA at 1952.598 kb on - strand, within endA at 1952.618 kb on - strand, within endA at 1952.801 kb on + strand, within endA at 1952.801 kb on + strand, within endA at 1952.801 kb on + strand, within endA at 1952.801 kb on + strand, within endA at 1952.802 kb on - strand, within endA at 1952.813 kb on - strand, within endA at 1952.820 kb on - strand, within endA at 1952.873 kb on + strand, within endA at 1952.874 kb on - strand, within endA at 1952.879 kb on + strand, within endA at 1952.879 kb on + strand, within endA at 1952.879 kb on + strand, within endA at 1952.879 kb on + strand, within endA at 1952.879 kb on + strand, within endA at 1952.880 kb on - strand, within endA at 1952.880 kb on - strand, within endA at 1952.880 kb on - strand, within endA at 1952.880 kb on - strand, within endA at 1952.934 kb on - strand at 1952.941 kb on + strand at 1952.947 kb on + strand at 1952.947 kb on + strand at 1952.947 kb on + strand at 1952.948 kb on - strand at 1952.948 kb on - strand at 1952.948 kb on - strand at 1952.948 kb on - strand at 1952.948 kb on - strand at 1952.948 kb on - strand at 1952.948 kb on - strand at 1952.957 kb on - strand at 1952.957 kb on - strand at 1952.957 kb on - strand at 1953.034 kb on + strand at 1953.034 kb on + strand at 1953.047 kb on + strand at 1953.107 kb on - strand, within sprT at 1953.115 kb on - strand, within sprT at 1953.129 kb on + strand, within sprT at 1953.129 kb on + strand, within sprT at 1953.150 kb on + strand, within sprT at 1953.150 kb on + strand, within sprT at 1953.150 kb on + strand, within sprT at 1953.150 kb on + strand, within sprT at 1953.150 kb on + strand, within sprT at 1953.150 kb on + strand, within sprT at 1953.150 kb on + strand, within sprT at 1953.150 kb on + strand, within sprT at 1953.150 kb on + strand, within sprT at 1953.151 kb on - strand, within sprT at 1953.151 kb on - strand, within sprT at 1953.151 kb on - strand, within sprT at 1953.151 kb on - strand, within sprT at 1953.151 kb on - strand, within sprT at 1953.151 kb on - strand, within sprT at 1953.159 kb on - strand, within sprT
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 1,950,462 - -1.3 1,950,471 + -0.0 1,950,472 - -0.3 1,950,472 - +0.4 1,950,474 + -1.0 1,950,474 + -2.2 1,950,474 + +0.2 1,950,474 + +1.0 1,950,475 - -2.4 1,950,475 - -0.7 1,950,482 + +3.3 1,950,482 + +1.1 1,950,506 + -1.8 1,950,553 + -2.0 1,950,553 + -2.0 1,950,575 - gshB MCAODC_09795 0.11 +0.6 1,950,575 - gshB MCAODC_09795 0.11 +1.0 1,950,823 - gshB MCAODC_09795 0.37 -0.3 1,950,824 - gshB MCAODC_09795 0.37 -0.0 1,950,980 + gshB MCAODC_09795 0.53 -1.8 1,950,981 - gshB MCAODC_09795 0.54 +0.1 1,951,000 + gshB MCAODC_09795 0.56 +0.6 1,951,020 - gshB MCAODC_09795 0.58 -2.8 1,951,122 + gshB MCAODC_09795 0.68 +1.4 1,951,123 - gshB MCAODC_09795 0.69 +1.2 1,951,136 - gshB MCAODC_09795 0.70 +0.4 1,951,234 - gshB MCAODC_09795 0.80 -1.4 1,951,290 + gshB MCAODC_09795 0.86 +0.3 1,951,290 + gshB MCAODC_09795 0.86 -1.5 1,951,310 - gshB MCAODC_09795 0.88 +0.3 1,951,310 - gshB MCAODC_09795 0.88 +0.2 1,951,310 - gshB MCAODC_09795 0.88 -1.4 1,951,311 + gshB MCAODC_09795 0.88 -3.0 1,951,311 + gshB MCAODC_09795 0.88 -1.7 1,951,311 + gshB MCAODC_09795 0.88 -0.4 1,951,312 - gshB MCAODC_09795 0.89 -1.0 1,951,312 - gshB MCAODC_09795 0.89 -0.9 1,951,312 - gshB MCAODC_09795 0.89 -1.0 1,951,312 - gshB MCAODC_09795 0.89 -0.6 1,951,352 - -0.9 1,951,422 - -2.2 1,951,455 - -0.2 1,951,460 + -0.3 1,951,461 - +2.3 1,951,461 - -0.7 1,951,522 + rsmE MCAODC_09800 0.12 +0.3 1,951,536 + rsmE MCAODC_09800 0.14 +0.3 1,951,624 + rsmE MCAODC_09800 0.26 +0.6 1,951,624 + rsmE MCAODC_09800 0.26 -0.2 1,951,624 + rsmE MCAODC_09800 0.26 +0.3 1,951,624 + rsmE MCAODC_09800 0.26 -1.4 1,951,625 - rsmE MCAODC_09800 0.26 -3.4 1,951,625 - rsmE MCAODC_09800 0.26 -1.9 1,951,625 - rsmE MCAODC_09800 0.26 +0.5 1,951,625 - rsmE MCAODC_09800 0.26 -1.2 1,951,625 - rsmE MCAODC_09800 0.26 +0.6 1,951,637 - rsmE MCAODC_09800 0.28 +1.1 1,951,814 - rsmE MCAODC_09800 0.52 -0.0 1,951,843 + rsmE MCAODC_09800 0.56 -0.7 1,951,853 + rsmE MCAODC_09800 0.57 +1.2 1,951,882 + rsmE MCAODC_09800 0.61 +0.4 1,951,928 - rsmE MCAODC_09800 0.68 +1.9 1,951,928 - rsmE MCAODC_09800 0.68 +0.6 1,951,928 - rsmE MCAODC_09800 0.68 +0.1 1,952,003 - rsmE MCAODC_09800 0.78 -0.2 1,952,084 - rsmE MCAODC_09800 0.89 +0.2 1,952,084 - rsmE MCAODC_09800 0.89 +1.0 1,952,145 + -0.4 1,952,146 - +0.1 1,952,164 + -0.1 1,952,164 + +1.0 1,952,164 + +1.8 1,952,164 + +0.3 1,952,164 + +0.3 1,952,164 + -0.8 1,952,164 + +0.2 1,952,165 - +0.8 1,952,165 - +0.4 1,952,165 - +0.2 1,952,165 - +1.8 1,952,165 - +0.4 1,952,165 - +0.9 1,952,165 - +0.1 1,952,165 - -0.5 1,952,199 + -1.0 1,952,200 - -0.3 1,952,240 + -0.9 1,952,240 + +0.5 1,952,240 + -0.7 1,952,240 + -0.7 1,952,240 + +0.1 1,952,241 - -0.7 1,952,241 - -0.2 1,952,245 + -0.3 1,952,246 - +0.8 1,952,278 + -1.7 1,952,278 + -0.4 1,952,278 + -0.7 1,952,279 - -1.8 1,952,279 - +0.4 1,952,279 - -1.7 1,952,285 + +1.2 1,952,299 - -0.0 1,952,404 + endA MCAODC_09805 0.23 -3.0 1,952,404 + endA MCAODC_09805 0.23 +0.4 1,952,404 + endA MCAODC_09805 0.23 +0.3 1,952,418 - endA MCAODC_09805 0.25 -1.1 1,952,418 - endA MCAODC_09805 0.25 +0.2 1,952,419 + endA MCAODC_09805 0.25 -1.5 1,952,419 + endA MCAODC_09805 0.25 -0.1 1,952,419 + endA MCAODC_09805 0.25 +0.3 1,952,419 + endA MCAODC_09805 0.25 +0.2 1,952,419 + endA MCAODC_09805 0.25 +0.3 1,952,419 + endA MCAODC_09805 0.25 -0.4 1,952,419 + endA MCAODC_09805 0.25 -0.3 1,952,419 + endA MCAODC_09805 0.25 -1.7 1,952,419 + endA MCAODC_09805 0.25 -2.6 1,952,419 + endA MCAODC_09805 0.25 +0.2 1,952,420 - endA MCAODC_09805 0.25 -2.0 1,952,420 - endA MCAODC_09805 0.25 +0.2 1,952,420 - endA MCAODC_09805 0.25 +0.0 1,952,420 - endA MCAODC_09805 0.25 -0.7 1,952,420 - endA MCAODC_09805 0.25 +0.8 1,952,420 - endA MCAODC_09805 0.25 +0.2 1,952,420 - endA MCAODC_09805 0.25 +0.3 1,952,420 - endA MCAODC_09805 0.25 +0.3 1,952,420 - endA MCAODC_09805 0.25 -1.2 1,952,420 - endA MCAODC_09805 0.25 -0.4 1,952,420 - endA MCAODC_09805 0.25 +0.3 1,952,425 + endA MCAODC_09805 0.26 +0.7 1,952,426 - endA MCAODC_09805 0.26 -0.6 1,952,539 + endA MCAODC_09805 0.42 -1.8 1,952,539 + endA MCAODC_09805 0.42 -1.4 1,952,539 + endA MCAODC_09805 0.42 +0.3 1,952,540 - endA MCAODC_09805 0.42 +1.0 1,952,540 - endA MCAODC_09805 0.42 +1.0 1,952,543 + endA MCAODC_09805 0.42 +1.7 1,952,544 - endA MCAODC_09805 0.42 +0.1 1,952,544 - endA MCAODC_09805 0.42 +0.6 1,952,544 - endA MCAODC_09805 0.42 -2.2 1,952,592 - endA MCAODC_09805 0.49 -1.7 1,952,597 + endA MCAODC_09805 0.50 -0.0 1,952,598 - endA MCAODC_09805 0.50 -0.0 1,952,598 - endA MCAODC_09805 0.50 +1.0 1,952,618 - endA MCAODC_09805 0.53 +0.1 1,952,801 + endA MCAODC_09805 0.79 +0.4 1,952,801 + endA MCAODC_09805 0.79 +0.1 1,952,801 + endA MCAODC_09805 0.79 +0.4 1,952,801 + endA MCAODC_09805 0.79 +1.2 1,952,802 - endA MCAODC_09805 0.79 +1.4 1,952,813 - endA MCAODC_09805 0.80 +0.4 1,952,820 - endA MCAODC_09805 0.81 -1.2 1,952,873 + endA MCAODC_09805 0.89 -1.3 1,952,874 - endA MCAODC_09805 0.89 -1.1 1,952,879 + endA MCAODC_09805 0.90 -0.2 1,952,879 + endA MCAODC_09805 0.90 +2.1 1,952,879 + endA MCAODC_09805 0.90 -0.6 1,952,879 + endA MCAODC_09805 0.90 +0.1 1,952,879 + endA MCAODC_09805 0.90 -0.4 1,952,880 - endA MCAODC_09805 0.90 +0.2 1,952,880 - endA MCAODC_09805 0.90 +0.1 1,952,880 - endA MCAODC_09805 0.90 -0.6 1,952,880 - endA MCAODC_09805 0.90 -0.8 1,952,934 - +0.2 1,952,941 + -2.4 1,952,947 + +0.4 1,952,947 + +1.1 1,952,947 + +0.5 1,952,948 - +1.0 1,952,948 - +0.4 1,952,948 - -0.1 1,952,948 - +0.9 1,952,948 - -0.7 1,952,948 - +0.7 1,952,948 - -0.3 1,952,957 - +0.3 1,952,957 - -0.2 1,952,957 - -0.2 1,953,034 + +1.0 1,953,034 + -1.8 1,953,047 + +0.4 1,953,107 - sprT MCAODC_09810 0.13 +1.2 1,953,115 - sprT MCAODC_09810 0.15 +0.7 1,953,129 + sprT MCAODC_09810 0.18 -1.5 1,953,129 + sprT MCAODC_09810 0.18 -2.2 1,953,150 + sprT MCAODC_09810 0.23 +1.0 1,953,150 + sprT MCAODC_09810 0.23 -1.0 1,953,150 + sprT MCAODC_09810 0.23 +0.9 1,953,150 + sprT MCAODC_09810 0.23 -0.3 1,953,150 + sprT MCAODC_09810 0.23 +0.4 1,953,150 + sprT MCAODC_09810 0.23 -1.5 1,953,150 + sprT MCAODC_09810 0.23 +0.8 1,953,150 + sprT MCAODC_09810 0.23 -0.4 1,953,150 + sprT MCAODC_09810 0.23 -0.6 1,953,151 - sprT MCAODC_09810 0.23 -0.6 1,953,151 - sprT MCAODC_09810 0.23 +0.0 1,953,151 - sprT MCAODC_09810 0.23 +0.1 1,953,151 - sprT MCAODC_09810 0.23 -0.6 1,953,151 - sprT MCAODC_09810 0.23 +0.8 1,953,151 - sprT MCAODC_09810 0.23 -0.4 1,953,159 - sprT MCAODC_09810 0.25 -0.0
Or see this region's nucleotide sequence