Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ftsX and rpoH are separated by 244 nucleotides rpoH and livJ are separated by 270 nucleotides
MCAODC_07240: ftsX - permease-like cell division protein FtsX, at 1,464,865 to 1,465,923
ftsX
MCAODC_07245: rpoH - RNA polymerase sigma factor RpoH, at 1,466,168 to 1,467,022
rpoH
MCAODC_07250: livJ - branched chain amino acid ABC transporter substrate-binding protein LivJ, at 1,467,293 to 1,468,396
livJ
Position (kb)
1466
1467
1468 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1465.921 kb on + strand at 1465.922 kb on - strand at 1465.925 kb on - strand at 1465.936 kb on - strand at 1465.936 kb on - strand at 1465.937 kb on + strand at 1465.937 kb on + strand at 1465.937 kb on + strand at 1465.937 kb on + strand at 1465.938 kb on - strand at 1465.938 kb on - strand at 1465.938 kb on - strand at 1465.996 kb on + strand at 1466.007 kb on + strand at 1466.008 kb on - strand at 1466.008 kb on - strand at 1466.008 kb on - strand at 1466.025 kb on + strand at 1466.105 kb on + strand at 1467.012 kb on + strand at 1467.012 kb on + strand at 1467.012 kb on + strand at 1467.012 kb on + strand at 1467.030 kb on + strand at 1467.030 kb on + strand at 1467.033 kb on + strand at 1467.083 kb on + strand at 1467.151 kb on - strand at 1467.233 kb on - strand at 1467.264 kb on + strand at 1467.264 kb on + strand at 1467.264 kb on + strand at 1467.264 kb on + strand at 1467.264 kb on + strand at 1467.265 kb on - strand at 1467.265 kb on - strand at 1467.300 kb on + strand at 1467.301 kb on - strand at 1467.301 kb on - strand at 1467.328 kb on + strand at 1467.328 kb on + strand at 1467.329 kb on - strand at 1467.367 kb on + strand at 1467.370 kb on + strand at 1467.370 kb on + strand at 1467.413 kb on + strand, within livJ at 1467.413 kb on + strand, within livJ at 1467.478 kb on + strand, within livJ at 1467.489 kb on + strand, within livJ at 1467.502 kb on - strand, within livJ at 1467.506 kb on + strand, within livJ at 1467.506 kb on + strand, within livJ at 1467.506 kb on + strand, within livJ at 1467.507 kb on - strand, within livJ at 1467.571 kb on + strand, within livJ at 1467.571 kb on + strand, within livJ at 1467.571 kb on + strand, within livJ at 1467.571 kb on + strand, within livJ at 1467.571 kb on + strand, within livJ at 1467.571 kb on + strand, within livJ at 1467.572 kb on - strand, within livJ at 1467.572 kb on - strand, within livJ at 1467.572 kb on - strand, within livJ at 1467.576 kb on - strand, within livJ at 1467.626 kb on + strand, within livJ at 1467.627 kb on - strand, within livJ at 1467.627 kb on - strand, within livJ at 1467.627 kb on - strand, within livJ at 1467.645 kb on + strand, within livJ at 1467.753 kb on - strand, within livJ at 1467.753 kb on - strand, within livJ at 1467.781 kb on + strand, within livJ at 1467.781 kb on + strand, within livJ at 1467.781 kb on + strand, within livJ at 1467.782 kb on - strand, within livJ at 1467.782 kb on - strand, within livJ at 1467.782 kb on - strand, within livJ at 1467.862 kb on + strand, within livJ at 1467.862 kb on + strand, within livJ at 1467.863 kb on - strand, within livJ at 1467.957 kb on - strand, within livJ
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 1,465,921 + -0.2 1,465,922 - -3.7 1,465,925 - +0.0 1,465,936 - +1.4 1,465,936 - -0.1 1,465,937 + +1.0 1,465,937 + -0.7 1,465,937 + -3.8 1,465,937 + +0.2 1,465,938 - +0.3 1,465,938 - -0.0 1,465,938 - +0.5 1,465,996 + +0.4 1,466,007 + -1.0 1,466,008 - +0.3 1,466,008 - +0.1 1,466,008 - +0.1 1,466,025 + +1.8 1,466,105 + -0.6 1,467,012 + -0.1 1,467,012 + -0.2 1,467,012 + -0.9 1,467,012 + +1.5 1,467,030 + +0.1 1,467,030 + -0.9 1,467,033 + -0.3 1,467,083 + +0.1 1,467,151 - +0.0 1,467,233 - +1.0 1,467,264 + -1.3 1,467,264 + -1.2 1,467,264 + +1.1 1,467,264 + +0.2 1,467,264 + +1.2 1,467,265 - +1.0 1,467,265 - +0.0 1,467,300 + -1.9 1,467,301 - +0.6 1,467,301 - -0.3 1,467,328 + +1.9 1,467,328 + +1.9 1,467,329 - +0.7 1,467,367 + -0.1 1,467,370 + -2.0 1,467,370 + +0.5 1,467,413 + livJ MCAODC_07250 0.11 -0.4 1,467,413 + livJ MCAODC_07250 0.11 -0.2 1,467,478 + livJ MCAODC_07250 0.17 +1.1 1,467,489 + livJ MCAODC_07250 0.18 -0.4 1,467,502 - livJ MCAODC_07250 0.19 +1.2 1,467,506 + livJ MCAODC_07250 0.19 +1.3 1,467,506 + livJ MCAODC_07250 0.19 -1.8 1,467,506 + livJ MCAODC_07250 0.19 +0.1 1,467,507 - livJ MCAODC_07250 0.19 +0.5 1,467,571 + livJ MCAODC_07250 0.25 +0.5 1,467,571 + livJ MCAODC_07250 0.25 -3.5 1,467,571 + livJ MCAODC_07250 0.25 -0.7 1,467,571 + livJ MCAODC_07250 0.25 -0.1 1,467,571 + livJ MCAODC_07250 0.25 -2.2 1,467,571 + livJ MCAODC_07250 0.25 +0.1 1,467,572 - livJ MCAODC_07250 0.25 -2.6 1,467,572 - livJ MCAODC_07250 0.25 -3.6 1,467,572 - livJ MCAODC_07250 0.25 -0.6 1,467,576 - livJ MCAODC_07250 0.26 +1.3 1,467,626 + livJ MCAODC_07250 0.30 +0.3 1,467,627 - livJ MCAODC_07250 0.30 +0.6 1,467,627 - livJ MCAODC_07250 0.30 -1.5 1,467,627 - livJ MCAODC_07250 0.30 +0.5 1,467,645 + livJ MCAODC_07250 0.32 +0.1 1,467,753 - livJ MCAODC_07250 0.42 -0.5 1,467,753 - livJ MCAODC_07250 0.42 -0.2 1,467,781 + livJ MCAODC_07250 0.44 +0.2 1,467,781 + livJ MCAODC_07250 0.44 +0.6 1,467,781 + livJ MCAODC_07250 0.44 -0.2 1,467,782 - livJ MCAODC_07250 0.44 +0.4 1,467,782 - livJ MCAODC_07250 0.44 -1.7 1,467,782 - livJ MCAODC_07250 0.44 -0.1 1,467,862 + livJ MCAODC_07250 0.52 -0.2 1,467,862 + livJ MCAODC_07250 0.52 +0.1 1,467,863 - livJ MCAODC_07250 0.52 -0.1 1,467,957 - livJ MCAODC_07250 0.60 -0.4
Or see this region's nucleotide sequence