Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_06340 and yibG are separated by 826 nucleotides yibG and rhsA are separated by 11 nucleotides
MCAODC_06340: MCAODC_06340 - Immunity protein 57, at 1,275,440 to 1,275,757
_06340
MCAODC_06345: yibG - Uncharacterized protein YibG, at 1,276,584 to 1,277,045
yibG
MCAODC_06350: rhsA - RHS element protein, at 1,277,057 to 1,281,286
rhsA
Position (kb) 1276
1277
1278 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1275.630 kb on + strand, within MCAODC_06340 at 1275.638 kb on + strand, within MCAODC_06340 at 1275.660 kb on - strand, within MCAODC_06340 at 1275.791 kb on - strand at 1276.107 kb on - strand at 1276.110 kb on + strand at 1276.202 kb on + strand at 1276.242 kb on - strand at 1276.267 kb on + strand at 1276.340 kb on + strand at 1276.340 kb on + strand at 1276.363 kb on + strand at 1276.367 kb on + strand at 1276.368 kb on - strand at 1276.380 kb on + strand at 1276.383 kb on - strand at 1276.395 kb on - strand at 1276.454 kb on + strand at 1276.454 kb on + strand at 1276.455 kb on - strand at 1276.485 kb on - strand at 1276.487 kb on - strand at 1276.520 kb on - strand at 1276.523 kb on + strand at 1276.524 kb on - strand at 1276.526 kb on - strand at 1276.526 kb on - strand at 1276.526 kb on - strand at 1276.549 kb on + strand at 1276.549 kb on + strand at 1276.549 kb on + strand at 1276.549 kb on + strand at 1276.803 kb on + strand, within yibG at 1276.958 kb on + strand, within yibG at 1277.064 kb on - strand at 1277.124 kb on + strand at 1277.225 kb on - strand at 1277.274 kb on - strand at 1277.285 kb on + strand at 1277.286 kb on - strand at 1277.332 kb on + strand at 1277.332 kb on + strand at 1277.335 kb on + strand at 1277.368 kb on + strand at 1277.394 kb on + strand at 1277.400 kb on - strand at 1277.441 kb on - strand at 1277.486 kb on - strand, within rhsA at 1277.635 kb on + strand, within rhsA at 1277.635 kb on + strand, within rhsA at 1277.635 kb on + strand, within rhsA at 1277.635 kb on + strand, within rhsA at 1277.635 kb on + strand, within rhsA at 1277.637 kb on + strand, within rhsA at 1277.659 kb on - strand, within rhsA at 1277.677 kb on - strand, within rhsA at 1277.677 kb on - strand, within rhsA at 1277.677 kb on - strand, within rhsA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 1,275,630 + MCAODC_06340 0.60 +0.5 1,275,638 + MCAODC_06340 0.62 -0.2 1,275,660 - MCAODC_06340 0.69 -0.4 1,275,791 - +0.2 1,276,107 - -0.6 1,276,110 + -0.5 1,276,202 + +1.0 1,276,242 - +2.4 1,276,267 + +1.1 1,276,340 + -0.4 1,276,340 + +0.4 1,276,363 + -1.0 1,276,367 + -0.8 1,276,368 - -1.2 1,276,380 + +0.1 1,276,383 - +0.1 1,276,395 - -1.6 1,276,454 + +1.0 1,276,454 + +0.4 1,276,455 - +0.3 1,276,485 - +2.1 1,276,487 - -1.7 1,276,520 - -0.0 1,276,523 + -1.6 1,276,524 - -0.5 1,276,526 - -0.1 1,276,526 - -0.9 1,276,526 - -2.6 1,276,549 + +1.5 1,276,549 + +0.8 1,276,549 + -0.0 1,276,549 + -0.4 1,276,803 + yibG MCAODC_06345 0.47 -1.1 1,276,958 + yibG MCAODC_06345 0.81 -0.6 1,277,064 - +0.6 1,277,124 + -1.3 1,277,225 - -0.4 1,277,274 - -0.5 1,277,285 + +0.0 1,277,286 - -0.6 1,277,332 + -0.6 1,277,332 + -0.3 1,277,335 + +0.1 1,277,368 + +0.3 1,277,394 + +1.0 1,277,400 - +0.0 1,277,441 - +1.0 1,277,486 - rhsA MCAODC_06350 0.10 +0.9 1,277,635 + rhsA MCAODC_06350 0.14 -2.2 1,277,635 + rhsA MCAODC_06350 0.14 -0.3 1,277,635 + rhsA MCAODC_06350 0.14 +0.2 1,277,635 + rhsA MCAODC_06350 0.14 +1.0 1,277,635 + rhsA MCAODC_06350 0.14 +0.7 1,277,637 + rhsA MCAODC_06350 0.14 +0.2 1,277,659 - rhsA MCAODC_06350 0.14 -2.8 1,277,677 - rhsA MCAODC_06350 0.15 +0.0 1,277,677 - rhsA MCAODC_06350 0.15 +1.0 1,277,677 - rhsA MCAODC_06350 0.15 -0.3
Or see this region's nucleotide sequence