Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjbH and MCAODC_03650 overlap by 1 nucleotides MCAODC_03650 and MCAODC_03655 overlap by 4 nucleotides MCAODC_03655 and yjbE are separated by 113 nucleotides
MCAODC_03645: yjbH - Uncharacterized lipoprotein YjbH, at 731,907 to 734,003
yjbH
MCAODC_03650: MCAODC_03650 - Uncharacterized protein YjbG, at 734,003 to 734,740
_03650
MCAODC_03655: MCAODC_03655 - Lipoprotein yjbF, at 734,737 to 735,375
_03655
MCAODC_03660: yjbE - Uncharacterized protein YjbE, at 735,489 to 735,731
yjbE
Position (kb) 734
735 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 733.015 kb on + strand, within yjbH at 733.015 kb on + strand, within yjbH at 733.016 kb on - strand, within yjbH at 733.016 kb on - strand, within yjbH at 733.016 kb on - strand, within yjbH at 733.016 kb on - strand, within yjbH at 733.067 kb on - strand, within yjbH at 733.067 kb on - strand, within yjbH at 733.067 kb on - strand, within yjbH at 733.081 kb on - strand, within yjbH at 733.159 kb on + strand, within yjbH at 733.159 kb on + strand, within yjbH at 733.160 kb on - strand, within yjbH at 733.160 kb on - strand, within yjbH at 733.208 kb on + strand, within yjbH at 733.208 kb on + strand, within yjbH at 733.208 kb on + strand, within yjbH at 733.208 kb on + strand, within yjbH at 733.209 kb on - strand, within yjbH at 733.209 kb on - strand, within yjbH at 733.228 kb on + strand, within yjbH at 733.228 kb on + strand, within yjbH at 733.229 kb on - strand, within yjbH at 733.229 kb on - strand, within yjbH at 733.232 kb on + strand, within yjbH at 733.232 kb on + strand, within yjbH at 733.232 kb on + strand, within yjbH at 733.232 kb on + strand, within yjbH at 733.233 kb on - strand, within yjbH at 733.233 kb on - strand, within yjbH at 733.233 kb on - strand, within yjbH at 733.233 kb on - strand, within yjbH at 733.233 kb on - strand, within yjbH at 733.325 kb on - strand, within yjbH at 733.325 kb on - strand, within yjbH at 733.325 kb on - strand, within yjbH at 733.328 kb on + strand, within yjbH at 733.340 kb on - strand, within yjbH at 733.340 kb on - strand, within yjbH at 733.433 kb on + strand, within yjbH at 733.434 kb on - strand, within yjbH at 733.450 kb on + strand, within yjbH at 733.450 kb on + strand, within yjbH at 733.450 kb on + strand, within yjbH at 733.450 kb on + strand, within yjbH at 733.451 kb on - strand, within yjbH at 733.471 kb on + strand, within yjbH at 733.471 kb on + strand, within yjbH at 733.471 kb on + strand, within yjbH at 733.472 kb on - strand, within yjbH at 733.475 kb on + strand, within yjbH at 733.476 kb on - strand, within yjbH at 733.509 kb on - strand, within yjbH at 733.586 kb on - strand, within yjbH at 733.651 kb on + strand, within yjbH at 733.652 kb on - strand, within yjbH at 733.691 kb on + strand, within yjbH at 733.692 kb on - strand, within yjbH at 733.697 kb on + strand, within yjbH at 733.698 kb on - strand, within yjbH at 733.698 kb on - strand, within yjbH at 733.699 kb on + strand, within yjbH at 733.700 kb on - strand, within yjbH at 733.700 kb on - strand, within yjbH at 733.736 kb on - strand, within yjbH at 733.736 kb on - strand, within yjbH at 733.736 kb on - strand, within yjbH at 733.807 kb on + strand at 733.808 kb on - strand at 733.808 kb on - strand at 733.811 kb on - strand at 733.834 kb on + strand at 733.884 kb on + strand at 733.884 kb on + strand at 733.884 kb on + strand at 733.885 kb on - strand at 733.885 kb on - strand at 733.885 kb on - strand at 733.936 kb on + strand at 733.937 kb on - strand at 733.937 kb on - strand at 733.937 kb on - strand at 733.961 kb on + strand at 733.961 kb on + strand at 733.977 kb on + strand at 733.977 kb on + strand at 733.982 kb on + strand at 733.982 kb on + strand at 733.982 kb on + strand at 733.983 kb on - strand at 734.005 kb on - strand at 734.094 kb on + strand, within MCAODC_03650 at 734.094 kb on + strand, within MCAODC_03650 at 734.095 kb on - strand, within MCAODC_03650 at 734.095 kb on - strand, within MCAODC_03650 at 734.095 kb on - strand, within MCAODC_03650 at 734.098 kb on + strand, within MCAODC_03650 at 734.099 kb on - strand, within MCAODC_03650 at 734.099 kb on - strand, within MCAODC_03650 at 734.099 kb on - strand, within MCAODC_03650 at 734.099 kb on - strand, within MCAODC_03650 at 734.120 kb on + strand, within MCAODC_03650 at 734.120 kb on + strand, within MCAODC_03650 at 734.121 kb on - strand, within MCAODC_03650 at 734.139 kb on + strand, within MCAODC_03650 at 734.139 kb on + strand, within MCAODC_03650 at 734.175 kb on + strand, within MCAODC_03650 at 734.190 kb on + strand, within MCAODC_03650 at 734.190 kb on + strand, within MCAODC_03650 at 734.191 kb on - strand, within MCAODC_03650 at 734.194 kb on + strand, within MCAODC_03650 at 734.194 kb on + strand, within MCAODC_03650 at 734.209 kb on + strand, within MCAODC_03650 at 734.232 kb on + strand, within MCAODC_03650 at 734.285 kb on - strand, within MCAODC_03650 at 734.335 kb on - strand, within MCAODC_03650 at 734.335 kb on - strand, within MCAODC_03650 at 734.442 kb on - strand, within MCAODC_03650 at 734.442 kb on - strand, within MCAODC_03650 at 734.442 kb on - strand, within MCAODC_03650 at 734.612 kb on + strand, within MCAODC_03650 at 734.613 kb on - strand, within MCAODC_03650 at 734.725 kb on + strand at 734.726 kb on - strand at 734.735 kb on - strand at 734.780 kb on + strand at 734.781 kb on - strand at 734.795 kb on + strand at 734.796 kb on - strand at 734.916 kb on + strand, within MCAODC_03655 at 734.968 kb on + strand, within MCAODC_03655 at 735.037 kb on - strand, within MCAODC_03655 at 735.060 kb on + strand, within MCAODC_03655 at 735.060 kb on + strand, within MCAODC_03655 at 735.060 kb on + strand, within MCAODC_03655 at 735.207 kb on + strand, within MCAODC_03655 at 735.218 kb on + strand, within MCAODC_03655 at 735.218 kb on + strand, within MCAODC_03655 at 735.219 kb on - strand, within MCAODC_03655 at 735.219 kb on - strand, within MCAODC_03655 at 735.219 kb on - strand, within MCAODC_03655 at 735.219 kb on - strand, within MCAODC_03655 at 735.219 kb on - strand, within MCAODC_03655 at 735.237 kb on + strand, within MCAODC_03655 at 735.238 kb on - strand, within MCAODC_03655 at 735.238 kb on - strand, within MCAODC_03655 at 735.337 kb on + strand at 735.340 kb on + strand at 735.341 kb on - strand at 735.341 kb on - strand at 735.341 kb on - strand at 735.352 kb on - strand at 735.400 kb on - strand at 735.400 kb on - strand at 735.424 kb on + strand at 735.424 kb on + strand at 735.425 kb on - strand at 735.436 kb on + strand at 735.436 kb on + strand at 735.436 kb on + strand at 735.437 kb on - strand at 735.443 kb on - strand at 735.478 kb on + strand at 735.478 kb on + strand at 735.479 kb on - strand at 735.482 kb on + strand at 735.482 kb on + strand at 735.482 kb on + strand at 735.482 kb on + strand at 735.483 kb on - strand at 735.483 kb on - strand at 735.483 kb on - strand at 735.483 kb on - strand at 735.483 kb on - strand at 735.483 kb on - strand at 735.483 kb on - strand at 735.483 kb on - strand at 735.483 kb on - strand at 735.483 kb on - strand at 735.487 kb on + strand at 735.488 kb on - strand at 735.488 kb on - strand at 735.490 kb on + strand at 735.491 kb on - strand at 735.530 kb on + strand, within yjbE at 735.530 kb on + strand, within yjbE at 735.531 kb on - strand, within yjbE at 735.531 kb on - strand, within yjbE at 735.531 kb on - strand, within yjbE at 735.661 kb on - strand, within yjbE at 735.715 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 733,015 + yjbH MCAODC_03645 0.53 -0.0 733,015 + yjbH MCAODC_03645 0.53 +0.4 733,016 - yjbH MCAODC_03645 0.53 -1.4 733,016 - yjbH MCAODC_03645 0.53 -0.2 733,016 - yjbH MCAODC_03645 0.53 +0.2 733,016 - yjbH MCAODC_03645 0.53 -1.3 733,067 - yjbH MCAODC_03645 0.55 -3.0 733,067 - yjbH MCAODC_03645 0.55 +0.6 733,067 - yjbH MCAODC_03645 0.55 +0.6 733,081 - yjbH MCAODC_03645 0.56 +0.6 733,159 + yjbH MCAODC_03645 0.60 -1.4 733,159 + yjbH MCAODC_03645 0.60 +0.9 733,160 - yjbH MCAODC_03645 0.60 -0.7 733,160 - yjbH MCAODC_03645 0.60 -0.3 733,208 + yjbH MCAODC_03645 0.62 -0.3 733,208 + yjbH MCAODC_03645 0.62 +3.1 733,208 + yjbH MCAODC_03645 0.62 +1.2 733,208 + yjbH MCAODC_03645 0.62 +0.3 733,209 - yjbH MCAODC_03645 0.62 +0.3 733,209 - yjbH MCAODC_03645 0.62 -0.4 733,228 + yjbH MCAODC_03645 0.63 -0.6 733,228 + yjbH MCAODC_03645 0.63 +0.3 733,229 - yjbH MCAODC_03645 0.63 +0.4 733,229 - yjbH MCAODC_03645 0.63 +0.7 733,232 + yjbH MCAODC_03645 0.63 -0.6 733,232 + yjbH MCAODC_03645 0.63 -1.8 733,232 + yjbH MCAODC_03645 0.63 +0.3 733,232 + yjbH MCAODC_03645 0.63 -2.8 733,233 - yjbH MCAODC_03645 0.63 +0.4 733,233 - yjbH MCAODC_03645 0.63 +1.0 733,233 - yjbH MCAODC_03645 0.63 -0.0 733,233 - yjbH MCAODC_03645 0.63 +0.5 733,233 - yjbH MCAODC_03645 0.63 -0.8 733,325 - yjbH MCAODC_03645 0.68 +0.2 733,325 - yjbH MCAODC_03645 0.68 -0.9 733,325 - yjbH MCAODC_03645 0.68 +0.3 733,328 + yjbH MCAODC_03645 0.68 -0.6 733,340 - yjbH MCAODC_03645 0.68 -0.8 733,340 - yjbH MCAODC_03645 0.68 -0.9 733,433 + yjbH MCAODC_03645 0.73 +0.3 733,434 - yjbH MCAODC_03645 0.73 -0.1 733,450 + yjbH MCAODC_03645 0.74 +0.8 733,450 + yjbH MCAODC_03645 0.74 -3.1 733,450 + yjbH MCAODC_03645 0.74 +0.7 733,450 + yjbH MCAODC_03645 0.74 -1.9 733,451 - yjbH MCAODC_03645 0.74 -0.6 733,471 + yjbH MCAODC_03645 0.75 +0.4 733,471 + yjbH MCAODC_03645 0.75 -1.1 733,471 + yjbH MCAODC_03645 0.75 -0.3 733,472 - yjbH MCAODC_03645 0.75 -0.9 733,475 + yjbH MCAODC_03645 0.75 -1.1 733,476 - yjbH MCAODC_03645 0.75 -0.7 733,509 - yjbH MCAODC_03645 0.76 +0.5 733,586 - yjbH MCAODC_03645 0.80 +0.2 733,651 + yjbH MCAODC_03645 0.83 +1.0 733,652 - yjbH MCAODC_03645 0.83 +0.1 733,691 + yjbH MCAODC_03645 0.85 -0.2 733,692 - yjbH MCAODC_03645 0.85 -1.0 733,697 + yjbH MCAODC_03645 0.85 -1.9 733,698 - yjbH MCAODC_03645 0.85 +0.2 733,698 - yjbH MCAODC_03645 0.85 +0.1 733,699 + yjbH MCAODC_03645 0.85 +0.9 733,700 - yjbH MCAODC_03645 0.86 +0.4 733,700 - yjbH MCAODC_03645 0.86 +0.4 733,736 - yjbH MCAODC_03645 0.87 +1.3 733,736 - yjbH MCAODC_03645 0.87 +0.7 733,736 - yjbH MCAODC_03645 0.87 -0.1 733,807 + -0.8 733,808 - -0.6 733,808 - +1.1 733,811 - -2.6 733,834 + -0.1 733,884 + +0.6 733,884 + -0.2 733,884 + -1.5 733,885 - +1.5 733,885 - -0.6 733,885 - -0.3 733,936 + -0.3 733,937 - -1.5 733,937 - +0.1 733,937 - +0.4 733,961 + -0.2 733,961 + +1.1 733,977 + -0.3 733,977 + -0.0 733,982 + -0.3 733,982 + +0.5 733,982 + +0.5 733,983 - +0.9 734,005 - +0.5 734,094 + MCAODC_03650 0.12 -2.3 734,094 + MCAODC_03650 0.12 -0.1 734,095 - MCAODC_03650 0.12 -0.5 734,095 - MCAODC_03650 0.12 +0.4 734,095 - MCAODC_03650 0.12 -0.0 734,098 + MCAODC_03650 0.13 +1.6 734,099 - MCAODC_03650 0.13 -0.8 734,099 - MCAODC_03650 0.13 -0.0 734,099 - MCAODC_03650 0.13 -1.4 734,099 - MCAODC_03650 0.13 +0.9 734,120 + MCAODC_03650 0.16 -0.1 734,120 + MCAODC_03650 0.16 -1.0 734,121 - MCAODC_03650 0.16 +0.5 734,139 + MCAODC_03650 0.18 -3.1 734,139 + MCAODC_03650 0.18 +0.6 734,175 + MCAODC_03650 0.23 -0.3 734,190 + MCAODC_03650 0.25 +0.1 734,190 + MCAODC_03650 0.25 +0.5 734,191 - MCAODC_03650 0.25 +0.6 734,194 + MCAODC_03650 0.26 -0.2 734,194 + MCAODC_03650 0.26 -0.0 734,209 + MCAODC_03650 0.28 +1.4 734,232 + MCAODC_03650 0.31 +0.3 734,285 - MCAODC_03650 0.38 -0.3 734,335 - MCAODC_03650 0.45 -3.4 734,335 - MCAODC_03650 0.45 -0.1 734,442 - MCAODC_03650 0.59 -0.7 734,442 - MCAODC_03650 0.59 -0.4 734,442 - MCAODC_03650 0.59 +1.1 734,612 + MCAODC_03650 0.83 -0.3 734,613 - MCAODC_03650 0.83 -0.6 734,725 + +0.8 734,726 - -1.6 734,735 - +1.1 734,780 + -2.9 734,781 - +0.1 734,795 + -0.4 734,796 - +0.4 734,916 + MCAODC_03655 0.28 -1.5 734,968 + MCAODC_03655 0.36 +0.2 735,037 - MCAODC_03655 0.47 +1.4 735,060 + MCAODC_03655 0.51 +1.0 735,060 + MCAODC_03655 0.51 +0.9 735,060 + MCAODC_03655 0.51 +1.7 735,207 + MCAODC_03655 0.74 -0.7 735,218 + MCAODC_03655 0.75 +0.7 735,218 + MCAODC_03655 0.75 +0.3 735,219 - MCAODC_03655 0.75 +0.3 735,219 - MCAODC_03655 0.75 +0.4 735,219 - MCAODC_03655 0.75 -2.2 735,219 - MCAODC_03655 0.75 -3.3 735,219 - MCAODC_03655 0.75 -1.0 735,237 + MCAODC_03655 0.78 -2.7 735,238 - MCAODC_03655 0.78 -0.8 735,238 - MCAODC_03655 0.78 +0.6 735,337 + +0.8 735,340 + +0.6 735,341 - +0.9 735,341 - +0.7 735,341 - +1.8 735,352 - +1.7 735,400 - +1.0 735,400 - -0.8 735,424 + +0.5 735,424 + -1.9 735,425 - -1.2 735,436 + +0.1 735,436 + +0.3 735,436 + +1.8 735,437 - +0.3 735,443 - +0.2 735,478 + -0.4 735,478 + -0.3 735,479 - +0.6 735,482 + -0.9 735,482 + -0.5 735,482 + -1.2 735,482 + -0.2 735,483 - +1.6 735,483 - +0.4 735,483 - -0.6 735,483 - -0.3 735,483 - +0.8 735,483 - +1.0 735,483 - -0.8 735,483 - +0.2 735,483 - +0.0 735,483 - +0.1 735,487 + -3.2 735,488 - +0.1 735,488 - -0.8 735,490 + +0.9 735,491 - +0.5 735,530 + yjbE MCAODC_03660 0.17 +0.4 735,530 + yjbE MCAODC_03660 0.17 -0.3 735,531 - yjbE MCAODC_03660 0.17 -0.1 735,531 - yjbE MCAODC_03660 0.17 +0.5 735,531 - yjbE MCAODC_03660 0.17 +1.4 735,661 - yjbE MCAODC_03660 0.71 +0.9 735,715 + -0.8
Or see this region's nucleotide sequence