Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt phnM and phnN overlap by 1 nucleotides phnN and phnO overlap by 4 nucleotides phnO and phnP are separated by 1 nucleotides phnP and yjdP are separated by 76 nucleotides
MCAODC_03190: phnM - alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase, at 641,992 to 643,128
phnM
MCAODC_03195: phnN - ribose 1,5-bisphosphokinase, at 643,128 to 643,685
phnN
MCAODC_03200: phnO - aminoalkylphosphonate N-acetyltransferase, at 643,682 to 644,107
phnO
MCAODC_03205: phnP - phosphonate metabolism protein PhnP, at 644,109 to 644,867
phnP
MCAODC_03210: yjdP - Uncharacterized protein YjdP, at 644,944 to 645,273
yjdP
Position (kb) 643
644
645 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 642.810 kb on + strand, within phnM at 642.811 kb on - strand, within phnM at 642.895 kb on + strand, within phnM at 642.896 kb on - strand, within phnM at 642.896 kb on - strand, within phnM at 642.896 kb on - strand, within phnM at 643.009 kb on - strand, within phnM at 643.090 kb on - strand at 643.219 kb on + strand, within phnN at 643.220 kb on - strand, within phnN at 643.236 kb on + strand, within phnN at 643.353 kb on + strand, within phnN at 643.353 kb on + strand, within phnN at 643.353 kb on + strand, within phnN at 643.353 kb on + strand, within phnN at 643.353 kb on + strand, within phnN at 643.356 kb on + strand, within phnN at 643.357 kb on - strand, within phnN at 643.452 kb on + strand, within phnN at 643.453 kb on - strand, within phnN at 643.547 kb on + strand, within phnN at 643.575 kb on + strand, within phnN at 643.575 kb on + strand, within phnN at 643.577 kb on + strand, within phnN at 643.577 kb on + strand, within phnN at 643.578 kb on - strand, within phnN at 643.578 kb on - strand, within phnN at 643.596 kb on - strand, within phnN at 643.724 kb on + strand at 643.744 kb on - strand, within phnO at 643.744 kb on - strand, within phnO at 643.744 kb on - strand, within phnO at 643.924 kb on - strand, within phnO at 643.957 kb on + strand, within phnO at 643.957 kb on + strand, within phnO at 643.963 kb on - strand, within phnO at 644.055 kb on - strand, within phnO at 644.105 kb on + strand at 644.105 kb on + strand at 644.105 kb on + strand at 644.105 kb on + strand at 644.105 kb on + strand at 644.106 kb on - strand at 644.106 kb on - strand at 644.106 kb on - strand at 644.106 kb on - strand at 644.246 kb on + strand, within phnP at 644.342 kb on + strand, within phnP at 644.342 kb on + strand, within phnP at 644.343 kb on - strand, within phnP at 644.343 kb on - strand, within phnP at 644.343 kb on - strand, within phnP at 644.510 kb on - strand, within phnP at 644.657 kb on - strand, within phnP at 644.716 kb on + strand, within phnP at 644.716 kb on + strand, within phnP at 644.716 kb on + strand, within phnP at 644.717 kb on - strand, within phnP at 644.954 kb on + strand at 644.954 kb on + strand at 644.955 kb on - strand at 644.986 kb on + strand, within yjdP at 644.986 kb on + strand, within yjdP at 644.987 kb on - strand, within yjdP at 645.007 kb on - strand, within yjdP at 645.071 kb on + strand, within yjdP at 645.071 kb on + strand, within yjdP at 645.071 kb on + strand, within yjdP at 645.072 kb on - strand, within yjdP at 645.072 kb on - strand, within yjdP at 645.072 kb on - strand, within yjdP
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 642,810 + phnM MCAODC_03190 0.72 -0.1 642,811 - phnM MCAODC_03190 0.72 -3.3 642,895 + phnM MCAODC_03190 0.79 -0.7 642,896 - phnM MCAODC_03190 0.80 -0.2 642,896 - phnM MCAODC_03190 0.80 +0.9 642,896 - phnM MCAODC_03190 0.80 -0.7 643,009 - phnM MCAODC_03190 0.89 +0.9 643,090 - -2.4 643,219 + phnN MCAODC_03195 0.16 +1.7 643,220 - phnN MCAODC_03195 0.16 +0.5 643,236 + phnN MCAODC_03195 0.19 +0.1 643,353 + phnN MCAODC_03195 0.40 +0.2 643,353 + phnN MCAODC_03195 0.40 -1.4 643,353 + phnN MCAODC_03195 0.40 -1.1 643,353 + phnN MCAODC_03195 0.40 +0.5 643,353 + phnN MCAODC_03195 0.40 +0.9 643,356 + phnN MCAODC_03195 0.41 +0.1 643,357 - phnN MCAODC_03195 0.41 -0.1 643,452 + phnN MCAODC_03195 0.58 -0.2 643,453 - phnN MCAODC_03195 0.58 -0.1 643,547 + phnN MCAODC_03195 0.75 +1.0 643,575 + phnN MCAODC_03195 0.80 +1.9 643,575 + phnN MCAODC_03195 0.80 -2.2 643,577 + phnN MCAODC_03195 0.80 -0.4 643,577 + phnN MCAODC_03195 0.80 +0.6 643,578 - phnN MCAODC_03195 0.81 -0.1 643,578 - phnN MCAODC_03195 0.81 -0.6 643,596 - phnN MCAODC_03195 0.84 +0.4 643,724 + -1.1 643,744 - phnO MCAODC_03200 0.15 -2.1 643,744 - phnO MCAODC_03200 0.15 -1.6 643,744 - phnO MCAODC_03200 0.15 +0.5 643,924 - phnO MCAODC_03200 0.57 -0.8 643,957 + phnO MCAODC_03200 0.65 +1.2 643,957 + phnO MCAODC_03200 0.65 -0.1 643,963 - phnO MCAODC_03200 0.66 +0.6 644,055 - phnO MCAODC_03200 0.88 -2.2 644,105 + +0.2 644,105 + -0.4 644,105 + -2.5 644,105 + -1.2 644,105 + -0.2 644,106 - -1.0 644,106 - +0.1 644,106 - -1.1 644,106 - -0.1 644,246 + phnP MCAODC_03205 0.18 +2.6 644,342 + phnP MCAODC_03205 0.31 -1.7 644,342 + phnP MCAODC_03205 0.31 +0.3 644,343 - phnP MCAODC_03205 0.31 +1.0 644,343 - phnP MCAODC_03205 0.31 -0.1 644,343 - phnP MCAODC_03205 0.31 +0.8 644,510 - phnP MCAODC_03205 0.53 -0.1 644,657 - phnP MCAODC_03205 0.72 -3.8 644,716 + phnP MCAODC_03205 0.80 +0.4 644,716 + phnP MCAODC_03205 0.80 -0.6 644,716 + phnP MCAODC_03205 0.80 -2.0 644,717 - phnP MCAODC_03205 0.80 -0.1 644,954 + +0.9 644,954 + -1.6 644,955 - -0.6 644,986 + yjdP MCAODC_03210 0.13 +0.3 644,986 + yjdP MCAODC_03210 0.13 +0.5 644,987 - yjdP MCAODC_03210 0.13 +0.3 645,007 - yjdP MCAODC_03210 0.19 -2.0 645,071 + yjdP MCAODC_03210 0.38 -0.8 645,071 + yjdP MCAODC_03210 0.38 +0.3 645,071 + yjdP MCAODC_03210 0.38 +0.6 645,072 - yjdP MCAODC_03210 0.39 +0.2 645,072 - yjdP MCAODC_03210 0.39 -3.1 645,072 - yjdP MCAODC_03210 0.39 +0.7
Or see this region's nucleotide sequence