Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt melR and adiA are separated by 198 nucleotides adiA and adiY are separated by 324 nucleotides
MCAODC_03055: melR - transcriptional regulator MelR, at 617,988 to 618,896
melR
MCAODC_03060: adiA - arginine decarboxylase, at 619,095 to 621,362
adiA
MCAODC_03065: adiY - DNA-binding transcriptional activator AdiY, at 621,687 to 622,448
adiY
Position (kb) 619
620
621
622 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 618.095 kb on + strand, within melR at 618.096 kb on - strand, within melR at 618.224 kb on + strand, within melR at 618.225 kb on - strand, within melR at 618.365 kb on + strand, within melR at 618.365 kb on + strand, within melR at 618.412 kb on + strand, within melR at 618.413 kb on - strand, within melR at 618.479 kb on + strand, within melR at 618.561 kb on + strand, within melR at 618.562 kb on - strand, within melR at 618.562 kb on - strand, within melR at 618.562 kb on - strand, within melR at 618.597 kb on + strand, within melR at 618.644 kb on + strand, within melR at 618.702 kb on + strand, within melR at 618.702 kb on + strand, within melR at 618.702 kb on + strand, within melR at 618.703 kb on - strand, within melR at 618.703 kb on - strand, within melR at 618.761 kb on + strand, within melR at 618.828 kb on + strand at 618.828 kb on + strand at 618.828 kb on + strand at 618.828 kb on + strand at 618.828 kb on + strand at 618.829 kb on - strand at 618.829 kb on - strand at 618.829 kb on - strand at 618.895 kb on - strand at 618.909 kb on + strand at 618.942 kb on + strand at 618.943 kb on - strand at 619.051 kb on + strand at 619.051 kb on + strand at 619.103 kb on - strand at 619.103 kb on - strand at 619.448 kb on + strand, within adiA at 619.449 kb on - strand, within adiA at 619.539 kb on + strand, within adiA at 619.557 kb on + strand, within adiA at 619.557 kb on + strand, within adiA at 619.557 kb on + strand, within adiA at 619.558 kb on - strand, within adiA at 619.558 kb on - strand, within adiA at 619.558 kb on - strand, within adiA at 619.623 kb on + strand, within adiA at 619.624 kb on - strand, within adiA at 619.632 kb on + strand, within adiA at 619.633 kb on - strand, within adiA at 619.633 kb on - strand, within adiA at 619.635 kb on + strand, within adiA at 619.636 kb on - strand, within adiA at 619.636 kb on - strand, within adiA at 619.636 kb on - strand, within adiA at 619.744 kb on + strand, within adiA at 619.782 kb on - strand, within adiA at 619.850 kb on + strand, within adiA at 619.850 kb on + strand, within adiA at 619.850 kb on + strand, within adiA at 619.851 kb on - strand, within adiA at 619.851 kb on - strand, within adiA at 619.905 kb on + strand, within adiA at 619.905 kb on + strand, within adiA at 619.905 kb on + strand, within adiA at 619.906 kb on - strand, within adiA at 619.906 kb on - strand, within adiA at 619.906 kb on - strand, within adiA at 619.950 kb on + strand, within adiA at 619.951 kb on - strand, within adiA at 619.951 kb on - strand, within adiA at 619.951 kb on - strand, within adiA at 620.009 kb on + strand, within adiA at 620.037 kb on + strand, within adiA at 620.037 kb on + strand, within adiA at 620.038 kb on - strand, within adiA at 620.061 kb on + strand, within adiA at 620.062 kb on - strand, within adiA at 620.062 kb on - strand, within adiA at 620.076 kb on + strand, within adiA at 620.076 kb on + strand, within adiA at 620.076 kb on + strand, within adiA at 620.076 kb on + strand, within adiA at 620.079 kb on - strand, within adiA at 620.085 kb on - strand, within adiA at 620.152 kb on - strand, within adiA at 620.172 kb on + strand, within adiA at 620.173 kb on - strand, within adiA at 620.184 kb on + strand, within adiA at 620.184 kb on + strand, within adiA at 620.185 kb on - strand, within adiA at 620.223 kb on - strand, within adiA at 620.280 kb on + strand, within adiA at 620.280 kb on + strand, within adiA at 620.280 kb on + strand, within adiA at 620.280 kb on + strand, within adiA at 620.280 kb on + strand, within adiA at 620.280 kb on + strand, within adiA at 620.281 kb on - strand, within adiA at 620.281 kb on - strand, within adiA at 620.281 kb on - strand, within adiA at 620.281 kb on - strand, within adiA at 620.281 kb on - strand, within adiA at 620.281 kb on - strand, within adiA at 620.282 kb on + strand, within adiA at 620.282 kb on + strand, within adiA at 620.282 kb on + strand, within adiA at 620.282 kb on + strand, within adiA at 620.283 kb on - strand, within adiA at 620.283 kb on - strand, within adiA at 620.283 kb on - strand, within adiA at 620.283 kb on - strand, within adiA at 620.290 kb on + strand, within adiA at 620.290 kb on + strand, within adiA at 620.290 kb on + strand, within adiA at 620.290 kb on + strand, within adiA at 620.291 kb on - strand, within adiA at 620.291 kb on - strand, within adiA at 620.291 kb on - strand, within adiA at 620.291 kb on - strand, within adiA at 620.291 kb on - strand, within adiA at 620.312 kb on + strand, within adiA at 620.337 kb on + strand, within adiA at 620.338 kb on - strand, within adiA at 620.338 kb on - strand, within adiA at 620.338 kb on - strand, within adiA at 620.367 kb on + strand, within adiA at 620.368 kb on - strand, within adiA at 620.368 kb on - strand, within adiA at 620.487 kb on + strand, within adiA at 620.487 kb on + strand, within adiA at 620.487 kb on + strand, within adiA at 620.488 kb on - strand, within adiA at 620.488 kb on - strand, within adiA at 620.663 kb on + strand, within adiA at 620.682 kb on - strand, within adiA at 620.829 kb on - strand, within adiA at 620.843 kb on + strand, within adiA at 620.852 kb on - strand, within adiA at 620.908 kb on - strand, within adiA at 620.959 kb on - strand, within adiA at 620.970 kb on + strand, within adiA at 620.971 kb on - strand, within adiA at 621.057 kb on + strand, within adiA at 621.099 kb on + strand, within adiA at 621.248 kb on - strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.253 kb on - strand at 621.257 kb on - strand at 621.324 kb on - strand at 621.324 kb on - strand at 621.333 kb on - strand at 621.344 kb on + strand at 621.344 kb on + strand at 621.345 kb on - strand at 621.391 kb on + strand at 621.391 kb on + strand at 621.395 kb on + strand at 621.402 kb on - strand at 621.616 kb on - strand at 621.680 kb on + strand at 621.681 kb on - strand at 621.686 kb on + strand at 621.686 kb on + strand at 621.687 kb on - strand at 621.713 kb on + strand at 621.714 kb on - strand at 621.714 kb on - strand at 621.767 kb on + strand, within adiY at 621.770 kb on + strand, within adiY at 621.771 kb on - strand, within adiY at 621.799 kb on + strand, within adiY at 621.857 kb on + strand, within adiY at 621.900 kb on - strand, within adiY at 621.932 kb on + strand, within adiY at 622.100 kb on - strand, within adiY at 622.110 kb on - strand, within adiY at 622.118 kb on + strand, within adiY at 622.181 kb on + strand, within adiY at 622.184 kb on + strand, within adiY at 622.185 kb on - strand, within adiY at 622.202 kb on - strand, within adiY at 622.255 kb on - strand, within adiY at 622.255 kb on - strand, within adiY at 622.257 kb on - strand, within adiY at 622.304 kb on - strand, within adiY at 622.322 kb on + strand, within adiY
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 618,095 + melR MCAODC_03055 0.12 +0.3 618,096 - melR MCAODC_03055 0.12 -0.2 618,224 + melR MCAODC_03055 0.26 -0.1 618,225 - melR MCAODC_03055 0.26 -1.2 618,365 + melR MCAODC_03055 0.41 +0.8 618,365 + melR MCAODC_03055 0.41 +1.2 618,412 + melR MCAODC_03055 0.47 -1.8 618,413 - melR MCAODC_03055 0.47 -0.2 618,479 + melR MCAODC_03055 0.54 -2.2 618,561 + melR MCAODC_03055 0.63 -0.7 618,562 - melR MCAODC_03055 0.63 +0.5 618,562 - melR MCAODC_03055 0.63 +1.4 618,562 - melR MCAODC_03055 0.63 +0.0 618,597 + melR MCAODC_03055 0.67 +1.2 618,644 + melR MCAODC_03055 0.72 +0.5 618,702 + melR MCAODC_03055 0.79 +0.3 618,702 + melR MCAODC_03055 0.79 -0.1 618,702 + melR MCAODC_03055 0.79 -0.9 618,703 - melR MCAODC_03055 0.79 -0.2 618,703 - melR MCAODC_03055 0.79 +2.3 618,761 + melR MCAODC_03055 0.85 +1.1 618,828 + +0.0 618,828 + +1.7 618,828 + -0.1 618,828 + +0.1 618,828 + +0.7 618,829 - +0.1 618,829 - +0.5 618,829 - +0.7 618,895 - +1.8 618,909 + -2.6 618,942 + +0.4 618,943 - -1.8 619,051 + +0.0 619,051 + +0.6 619,103 - -0.2 619,103 - +1.5 619,448 + adiA MCAODC_03060 0.16 +1.3 619,449 - adiA MCAODC_03060 0.16 -0.6 619,539 + adiA MCAODC_03060 0.20 -0.8 619,557 + adiA MCAODC_03060 0.20 +0.7 619,557 + adiA MCAODC_03060 0.20 +1.2 619,557 + adiA MCAODC_03060 0.20 +0.4 619,558 - adiA MCAODC_03060 0.20 -0.2 619,558 - adiA MCAODC_03060 0.20 +0.8 619,558 - adiA MCAODC_03060 0.20 +0.7 619,623 + adiA MCAODC_03060 0.23 -0.4 619,624 - adiA MCAODC_03060 0.23 +1.9 619,632 + adiA MCAODC_03060 0.24 +0.6 619,633 - adiA MCAODC_03060 0.24 +0.9 619,633 - adiA MCAODC_03060 0.24 +0.1 619,635 + adiA MCAODC_03060 0.24 -0.7 619,636 - adiA MCAODC_03060 0.24 -0.8 619,636 - adiA MCAODC_03060 0.24 +1.0 619,636 - adiA MCAODC_03060 0.24 -1.7 619,744 + adiA MCAODC_03060 0.29 -0.4 619,782 - adiA MCAODC_03060 0.30 +0.0 619,850 + adiA MCAODC_03060 0.33 -0.7 619,850 + adiA MCAODC_03060 0.33 +0.2 619,850 + adiA MCAODC_03060 0.33 +1.1 619,851 - adiA MCAODC_03060 0.33 -1.4 619,851 - adiA MCAODC_03060 0.33 +0.1 619,905 + adiA MCAODC_03060 0.36 +0.3 619,905 + adiA MCAODC_03060 0.36 -0.9 619,905 + adiA MCAODC_03060 0.36 -1.0 619,906 - adiA MCAODC_03060 0.36 -0.8 619,906 - adiA MCAODC_03060 0.36 +0.7 619,906 - adiA MCAODC_03060 0.36 -0.9 619,950 + adiA MCAODC_03060 0.38 -0.0 619,951 - adiA MCAODC_03060 0.38 +0.0 619,951 - adiA MCAODC_03060 0.38 +0.7 619,951 - adiA MCAODC_03060 0.38 -0.8 620,009 + adiA MCAODC_03060 0.40 +1.1 620,037 + adiA MCAODC_03060 0.42 +0.4 620,037 + adiA MCAODC_03060 0.42 +0.9 620,038 - adiA MCAODC_03060 0.42 -0.3 620,061 + adiA MCAODC_03060 0.43 -0.1 620,062 - adiA MCAODC_03060 0.43 -1.8 620,062 - adiA MCAODC_03060 0.43 -3.4 620,076 + adiA MCAODC_03060 0.43 -0.6 620,076 + adiA MCAODC_03060 0.43 -3.8 620,076 + adiA MCAODC_03060 0.43 +0.0 620,076 + adiA MCAODC_03060 0.43 +0.7 620,079 - adiA MCAODC_03060 0.43 +0.1 620,085 - adiA MCAODC_03060 0.44 -2.2 620,152 - adiA MCAODC_03060 0.47 +0.6 620,172 + adiA MCAODC_03060 0.47 -1.9 620,173 - adiA MCAODC_03060 0.48 +0.1 620,184 + adiA MCAODC_03060 0.48 +1.4 620,184 + adiA MCAODC_03060 0.48 -0.5 620,185 - adiA MCAODC_03060 0.48 +1.0 620,223 - adiA MCAODC_03060 0.50 -1.5 620,280 + adiA MCAODC_03060 0.52 -0.6 620,280 + adiA MCAODC_03060 0.52 +0.9 620,280 + adiA MCAODC_03060 0.52 -1.0 620,280 + adiA MCAODC_03060 0.52 +0.1 620,280 + adiA MCAODC_03060 0.52 -1.2 620,280 + adiA MCAODC_03060 0.52 -0.3 620,281 - adiA MCAODC_03060 0.52 +0.5 620,281 - adiA MCAODC_03060 0.52 -0.4 620,281 - adiA MCAODC_03060 0.52 +0.3 620,281 - adiA MCAODC_03060 0.52 +1.8 620,281 - adiA MCAODC_03060 0.52 -0.2 620,281 - adiA MCAODC_03060 0.52 +0.2 620,282 + adiA MCAODC_03060 0.52 -0.6 620,282 + adiA MCAODC_03060 0.52 +1.4 620,282 + adiA MCAODC_03060 0.52 -2.1 620,282 + adiA MCAODC_03060 0.52 +0.1 620,283 - adiA MCAODC_03060 0.52 +0.6 620,283 - adiA MCAODC_03060 0.52 -0.5 620,283 - adiA MCAODC_03060 0.52 -0.6 620,283 - adiA MCAODC_03060 0.52 -1.5 620,290 + adiA MCAODC_03060 0.53 -0.0 620,290 + adiA MCAODC_03060 0.53 -0.4 620,290 + adiA MCAODC_03060 0.53 -1.2 620,290 + adiA MCAODC_03060 0.53 -0.0 620,291 - adiA MCAODC_03060 0.53 -1.0 620,291 - adiA MCAODC_03060 0.53 +0.9 620,291 - adiA MCAODC_03060 0.53 +0.9 620,291 - adiA MCAODC_03060 0.53 -1.2 620,291 - adiA MCAODC_03060 0.53 +0.6 620,312 + adiA MCAODC_03060 0.54 +0.6 620,337 + adiA MCAODC_03060 0.55 +0.8 620,338 - adiA MCAODC_03060 0.55 -0.3 620,338 - adiA MCAODC_03060 0.55 -0.1 620,338 - adiA MCAODC_03060 0.55 +0.9 620,367 + adiA MCAODC_03060 0.56 +0.1 620,368 - adiA MCAODC_03060 0.56 -1.2 620,368 - adiA MCAODC_03060 0.56 -0.5 620,487 + adiA MCAODC_03060 0.61 -1.3 620,487 + adiA MCAODC_03060 0.61 -0.6 620,487 + adiA MCAODC_03060 0.61 +1.1 620,488 - adiA MCAODC_03060 0.61 -1.9 620,488 - adiA MCAODC_03060 0.61 +0.3 620,663 + adiA MCAODC_03060 0.69 +0.5 620,682 - adiA MCAODC_03060 0.70 +0.1 620,829 - adiA MCAODC_03060 0.76 +0.2 620,843 + adiA MCAODC_03060 0.77 +0.3 620,852 - adiA MCAODC_03060 0.77 -3.9 620,908 - adiA MCAODC_03060 0.80 -2.3 620,959 - adiA MCAODC_03060 0.82 -3.1 620,970 + adiA MCAODC_03060 0.83 +0.2 620,971 - adiA MCAODC_03060 0.83 +0.5 621,057 + adiA MCAODC_03060 0.87 +0.1 621,099 + adiA MCAODC_03060 0.88 -0.7 621,248 - +0.5 621,252 + +0.6 621,252 + +1.0 621,252 + -1.1 621,253 - -0.3 621,257 - +1.1 621,324 - +0.2 621,324 - -0.9 621,333 - -0.1 621,344 + -0.7 621,344 + -3.6 621,345 - -0.4 621,391 + +0.6 621,391 + +0.9 621,395 + +0.1 621,402 - +0.3 621,616 - +0.3 621,680 + -2.5 621,681 - +0.3 621,686 + -0.1 621,686 + -0.1 621,687 - -0.8 621,713 + +0.1 621,714 - -3.6 621,714 - +1.5 621,767 + adiY MCAODC_03065 0.10 -0.7 621,770 + adiY MCAODC_03065 0.11 -0.8 621,771 - adiY MCAODC_03065 0.11 -0.2 621,799 + adiY MCAODC_03065 0.15 -1.1 621,857 + adiY MCAODC_03065 0.22 -1.3 621,900 - adiY MCAODC_03065 0.28 +0.0 621,932 + adiY MCAODC_03065 0.32 +0.8 622,100 - adiY MCAODC_03065 0.54 +0.5 622,110 - adiY MCAODC_03065 0.56 +0.3 622,118 + adiY MCAODC_03065 0.57 +0.6 622,181 + adiY MCAODC_03065 0.65 -1.1 622,184 + adiY MCAODC_03065 0.65 -1.1 622,185 - adiY MCAODC_03065 0.65 +0.9 622,202 - adiY MCAODC_03065 0.68 -0.4 622,255 - adiY MCAODC_03065 0.75 -1.2 622,255 - adiY MCAODC_03065 0.75 +0.1 622,257 - adiY MCAODC_03065 0.75 -3.8 622,304 - adiY MCAODC_03065 0.81 +1.0 622,322 + adiY MCAODC_03065 0.83 +1.0
Or see this region's nucleotide sequence