Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ulaG and ulaR are separated by 107 nucleotides ulaR and yjfP overlap by 4 nucleotides yjfP and bsmA are separated by 181 nucleotides
MCAODC_02670: ulaG - L-ascorbate 6-phosphate lactonase, at 540,713 to 541,777
ulaG
MCAODC_02675: ulaR - HTH-type transcriptional regulator UlaR, at 541,885 to 542,640
ulaR
MCAODC_02680: yjfP - esterase, at 542,637 to 543,386
yjfP
MCAODC_02685: bsmA - biofilm peroxide resistance protein BsmA, at 543,568 to 543,897
bsmA
Position (kb) 541
542
543 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 541.001 kb on - strand, within ulaG at 541.128 kb on + strand, within ulaG at 541.129 kb on - strand, within ulaG at 541.218 kb on + strand, within ulaG at 541.218 kb on + strand, within ulaG at 541.221 kb on + strand, within ulaG at 541.222 kb on - strand, within ulaG at 541.346 kb on + strand, within ulaG at 541.347 kb on - strand, within ulaG at 541.347 kb on - strand, within ulaG at 541.376 kb on + strand, within ulaG at 541.376 kb on + strand, within ulaG at 541.377 kb on - strand, within ulaG at 541.397 kb on + strand, within ulaG at 541.397 kb on + strand, within ulaG at 541.398 kb on - strand, within ulaG at 541.402 kb on + strand, within ulaG at 541.403 kb on - strand, within ulaG at 541.403 kb on - strand, within ulaG at 541.403 kb on - strand, within ulaG at 541.406 kb on + strand, within ulaG at 541.406 kb on + strand, within ulaG at 541.407 kb on - strand, within ulaG at 541.409 kb on + strand, within ulaG at 541.410 kb on - strand, within ulaG at 541.505 kb on - strand, within ulaG at 541.514 kb on - strand, within ulaG at 541.635 kb on - strand, within ulaG at 541.635 kb on - strand, within ulaG at 541.635 kb on - strand, within ulaG at 541.635 kb on - strand, within ulaG at 541.652 kb on - strand, within ulaG at 541.676 kb on - strand at 541.706 kb on + strand at 541.706 kb on + strand at 541.776 kb on - strand at 541.787 kb on + strand at 541.790 kb on - strand at 541.796 kb on + strand at 541.825 kb on + strand at 541.826 kb on - strand at 541.828 kb on + strand at 541.828 kb on + strand at 541.829 kb on - strand at 541.829 kb on - strand at 542.007 kb on + strand, within ulaR at 542.007 kb on + strand, within ulaR at 542.059 kb on - strand, within ulaR at 542.059 kb on - strand, within ulaR at 542.127 kb on - strand, within ulaR at 542.130 kb on + strand, within ulaR at 542.157 kb on + strand, within ulaR at 542.247 kb on + strand, within ulaR at 542.252 kb on - strand, within ulaR at 542.255 kb on + strand, within ulaR at 542.304 kb on + strand, within ulaR at 542.317 kb on + strand, within ulaR at 542.371 kb on + strand, within ulaR at 542.391 kb on + strand, within ulaR at 542.426 kb on - strand, within ulaR at 542.427 kb on + strand, within ulaR at 542.428 kb on - strand, within ulaR at 542.502 kb on + strand, within ulaR at 542.638 kb on + strand at 542.638 kb on + strand at 542.687 kb on + strand at 542.688 kb on - strand at 542.732 kb on + strand, within yjfP at 542.770 kb on - strand, within yjfP at 542.820 kb on + strand, within yjfP at 542.821 kb on - strand, within yjfP at 542.835 kb on - strand, within yjfP at 542.835 kb on - strand, within yjfP at 542.957 kb on + strand, within yjfP at 542.957 kb on + strand, within yjfP at 542.958 kb on - strand, within yjfP at 542.958 kb on - strand, within yjfP at 542.962 kb on + strand, within yjfP at 542.987 kb on + strand, within yjfP at 542.987 kb on + strand, within yjfP at 543.105 kb on + strand, within yjfP at 543.106 kb on - strand, within yjfP at 543.106 kb on - strand, within yjfP at 543.106 kb on - strand, within yjfP at 543.125 kb on + strand, within yjfP at 543.125 kb on + strand, within yjfP at 543.125 kb on + strand, within yjfP at 543.126 kb on - strand, within yjfP at 543.132 kb on + strand, within yjfP at 543.132 kb on + strand, within yjfP at 543.253 kb on + strand, within yjfP at 543.253 kb on + strand, within yjfP at 543.253 kb on + strand, within yjfP at 543.254 kb on - strand, within yjfP at 543.254 kb on - strand, within yjfP at 543.257 kb on + strand, within yjfP at 543.257 kb on + strand, within yjfP at 543.257 kb on + strand, within yjfP at 543.257 kb on + strand, within yjfP at 543.257 kb on + strand, within yjfP at 543.258 kb on - strand, within yjfP at 543.258 kb on - strand, within yjfP at 543.258 kb on - strand, within yjfP at 543.258 kb on - strand, within yjfP at 543.258 kb on - strand, within yjfP at 543.258 kb on - strand, within yjfP at 543.258 kb on - strand, within yjfP at 543.258 kb on - strand, within yjfP at 543.259 kb on + strand, within yjfP at 543.259 kb on + strand, within yjfP at 543.259 kb on + strand, within yjfP at 543.259 kb on + strand, within yjfP at 543.260 kb on - strand, within yjfP at 543.260 kb on - strand, within yjfP at 543.260 kb on - strand, within yjfP at 543.260 kb on - strand, within yjfP at 543.260 kb on - strand, within yjfP at 543.260 kb on - strand, within yjfP at 543.260 kb on - strand, within yjfP at 543.260 kb on - strand, within yjfP at 543.278 kb on + strand, within yjfP at 543.279 kb on - strand, within yjfP at 543.279 kb on - strand, within yjfP at 543.335 kb on - strand at 543.343 kb on - strand at 543.353 kb on + strand at 543.353 kb on + strand at 543.353 kb on + strand at 543.375 kb on + strand at 543.376 kb on - strand at 543.409 kb on - strand at 543.409 kb on - strand at 543.452 kb on + strand at 543.452 kb on + strand at 543.452 kb on + strand at 543.453 kb on - strand at 543.453 kb on - strand at 543.459 kb on + strand at 543.459 kb on + strand at 543.459 kb on + strand at 543.460 kb on - strand at 543.478 kb on - strand at 543.518 kb on + strand at 543.546 kb on + strand at 543.546 kb on + strand at 543.546 kb on + strand at 543.547 kb on - strand at 543.555 kb on - strand at 543.562 kb on + strand at 543.563 kb on - strand at 543.563 kb on - strand at 543.563 kb on - strand at 543.567 kb on + strand at 543.568 kb on - strand at 543.568 kb on - strand at 543.573 kb on + strand at 543.585 kb on + strand at 543.585 kb on + strand at 543.586 kb on - strand at 543.586 kb on - strand at 543.586 kb on - strand at 543.586 kb on - strand at 543.588 kb on + strand at 543.588 kb on + strand at 543.588 kb on + strand at 543.589 kb on - strand at 543.589 kb on - strand at 543.589 kb on - strand at 543.594 kb on + strand at 543.594 kb on + strand at 543.594 kb on + strand at 543.595 kb on - strand at 543.595 kb on - strand at 543.599 kb on - strand at 543.614 kb on + strand, within bsmA at 543.615 kb on - strand, within bsmA at 543.617 kb on + strand, within bsmA at 543.617 kb on + strand, within bsmA at 543.618 kb on - strand, within bsmA at 543.618 kb on - strand, within bsmA at 543.632 kb on + strand, within bsmA at 543.632 kb on + strand, within bsmA at 543.633 kb on - strand, within bsmA at 543.633 kb on - strand, within bsmA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 541,001 - ulaG MCAODC_02670 0.27 -0.5 541,128 + ulaG MCAODC_02670 0.39 -1.3 541,129 - ulaG MCAODC_02670 0.39 +0.5 541,218 + ulaG MCAODC_02670 0.47 -0.0 541,218 + ulaG MCAODC_02670 0.47 -1.5 541,221 + ulaG MCAODC_02670 0.48 +1.5 541,222 - ulaG MCAODC_02670 0.48 -1.0 541,346 + ulaG MCAODC_02670 0.59 +0.3 541,347 - ulaG MCAODC_02670 0.60 +0.1 541,347 - ulaG MCAODC_02670 0.60 -0.4 541,376 + ulaG MCAODC_02670 0.62 -1.5 541,376 + ulaG MCAODC_02670 0.62 -0.4 541,377 - ulaG MCAODC_02670 0.62 -0.0 541,397 + ulaG MCAODC_02670 0.64 +1.1 541,397 + ulaG MCAODC_02670 0.64 +0.4 541,398 - ulaG MCAODC_02670 0.64 +0.0 541,402 + ulaG MCAODC_02670 0.65 +1.0 541,403 - ulaG MCAODC_02670 0.65 +0.4 541,403 - ulaG MCAODC_02670 0.65 +0.8 541,403 - ulaG MCAODC_02670 0.65 +0.1 541,406 + ulaG MCAODC_02670 0.65 +1.5 541,406 + ulaG MCAODC_02670 0.65 +0.3 541,407 - ulaG MCAODC_02670 0.65 -1.6 541,409 + ulaG MCAODC_02670 0.65 +0.9 541,410 - ulaG MCAODC_02670 0.65 -0.9 541,505 - ulaG MCAODC_02670 0.74 +1.3 541,514 - ulaG MCAODC_02670 0.75 -3.7 541,635 - ulaG MCAODC_02670 0.87 -0.5 541,635 - ulaG MCAODC_02670 0.87 -2.5 541,635 - ulaG MCAODC_02670 0.87 +0.8 541,635 - ulaG MCAODC_02670 0.87 -1.8 541,652 - ulaG MCAODC_02670 0.88 +1.3 541,676 - -0.3 541,706 + -0.7 541,706 + -0.8 541,776 - -0.5 541,787 + -0.1 541,790 - -0.9 541,796 + -0.2 541,825 + +2.3 541,826 - -1.3 541,828 + -0.0 541,828 + +1.0 541,829 - -1.7 541,829 - +0.2 542,007 + ulaR MCAODC_02675 0.16 -0.4 542,007 + ulaR MCAODC_02675 0.16 -2.4 542,059 - ulaR MCAODC_02675 0.23 +0.9 542,059 - ulaR MCAODC_02675 0.23 -3.3 542,127 - ulaR MCAODC_02675 0.32 +0.0 542,130 + ulaR MCAODC_02675 0.32 -1.0 542,157 + ulaR MCAODC_02675 0.36 -1.8 542,247 + ulaR MCAODC_02675 0.48 -3.2 542,252 - ulaR MCAODC_02675 0.49 +2.0 542,255 + ulaR MCAODC_02675 0.49 +1.2 542,304 + ulaR MCAODC_02675 0.55 -2.5 542,317 + ulaR MCAODC_02675 0.57 +1.0 542,371 + ulaR MCAODC_02675 0.64 -1.5 542,391 + ulaR MCAODC_02675 0.67 -1.0 542,426 - ulaR MCAODC_02675 0.72 -2.5 542,427 + ulaR MCAODC_02675 0.72 -0.7 542,428 - ulaR MCAODC_02675 0.72 +0.6 542,502 + ulaR MCAODC_02675 0.82 -1.8 542,638 + -0.4 542,638 + +0.3 542,687 + -2.3 542,688 - +0.7 542,732 + yjfP MCAODC_02680 0.13 -0.4 542,770 - yjfP MCAODC_02680 0.18 +0.1 542,820 + yjfP MCAODC_02680 0.24 -0.4 542,821 - yjfP MCAODC_02680 0.25 +0.5 542,835 - yjfP MCAODC_02680 0.26 +0.4 542,835 - yjfP MCAODC_02680 0.26 +0.7 542,957 + yjfP MCAODC_02680 0.43 +0.7 542,957 + yjfP MCAODC_02680 0.43 -0.0 542,958 - yjfP MCAODC_02680 0.43 +1.4 542,958 - yjfP MCAODC_02680 0.43 +0.6 542,962 + yjfP MCAODC_02680 0.43 -0.0 542,987 + yjfP MCAODC_02680 0.47 -1.1 542,987 + yjfP MCAODC_02680 0.47 +1.9 543,105 + yjfP MCAODC_02680 0.62 -0.1 543,106 - yjfP MCAODC_02680 0.63 +0.1 543,106 - yjfP MCAODC_02680 0.63 +2.3 543,106 - yjfP MCAODC_02680 0.63 -0.7 543,125 + yjfP MCAODC_02680 0.65 -0.3 543,125 + yjfP MCAODC_02680 0.65 +0.1 543,125 + yjfP MCAODC_02680 0.65 +0.9 543,126 - yjfP MCAODC_02680 0.65 +0.8 543,132 + yjfP MCAODC_02680 0.66 +0.1 543,132 + yjfP MCAODC_02680 0.66 +0.2 543,253 + yjfP MCAODC_02680 0.82 -0.8 543,253 + yjfP MCAODC_02680 0.82 +1.0 543,253 + yjfP MCAODC_02680 0.82 -0.6 543,254 - yjfP MCAODC_02680 0.82 -0.7 543,254 - yjfP MCAODC_02680 0.82 -0.5 543,257 + yjfP MCAODC_02680 0.83 +0.8 543,257 + yjfP MCAODC_02680 0.83 +1.0 543,257 + yjfP MCAODC_02680 0.83 +0.5 543,257 + yjfP MCAODC_02680 0.83 -0.5 543,257 + yjfP MCAODC_02680 0.83 -0.8 543,258 - yjfP MCAODC_02680 0.83 -1.7 543,258 - yjfP MCAODC_02680 0.83 +0.5 543,258 - yjfP MCAODC_02680 0.83 -0.7 543,258 - yjfP MCAODC_02680 0.83 +0.2 543,258 - yjfP MCAODC_02680 0.83 +0.4 543,258 - yjfP MCAODC_02680 0.83 +0.0 543,258 - yjfP MCAODC_02680 0.83 +0.8 543,258 - yjfP MCAODC_02680 0.83 -0.5 543,259 + yjfP MCAODC_02680 0.83 -2.9 543,259 + yjfP MCAODC_02680 0.83 -2.2 543,259 + yjfP MCAODC_02680 0.83 -2.2 543,259 + yjfP MCAODC_02680 0.83 -0.7 543,260 - yjfP MCAODC_02680 0.83 -0.1 543,260 - yjfP MCAODC_02680 0.83 +2.2 543,260 - yjfP MCAODC_02680 0.83 -1.1 543,260 - yjfP MCAODC_02680 0.83 -0.1 543,260 - yjfP MCAODC_02680 0.83 +0.2 543,260 - yjfP MCAODC_02680 0.83 +0.2 543,260 - yjfP MCAODC_02680 0.83 +0.3 543,260 - yjfP MCAODC_02680 0.83 -1.1 543,278 + yjfP MCAODC_02680 0.85 +0.4 543,279 - yjfP MCAODC_02680 0.86 +0.5 543,279 - yjfP MCAODC_02680 0.86 -0.3 543,335 - +0.3 543,343 - +0.3 543,353 + +0.4 543,353 + +0.4 543,353 + -0.6 543,375 + +1.4 543,376 - -0.6 543,409 - -1.0 543,409 - +0.8 543,452 + -0.6 543,452 + +0.1 543,452 + +1.1 543,453 - -1.2 543,453 - -1.3 543,459 + -0.5 543,459 + -1.0 543,459 + +0.3 543,460 - +1.0 543,478 - +0.4 543,518 + -1.2 543,546 + +3.1 543,546 + +0.8 543,546 + -0.2 543,547 - -2.4 543,555 - +1.5 543,562 + -1.3 543,563 - -1.2 543,563 - -0.8 543,563 - -0.1 543,567 + +0.3 543,568 - +1.3 543,568 - -0.6 543,573 + +0.3 543,585 + +0.2 543,585 + +1.8 543,586 - +0.9 543,586 - +0.8 543,586 - +2.0 543,586 - +0.5 543,588 + -0.3 543,588 + +0.7 543,588 + +0.2 543,589 - -1.3 543,589 - -2.8 543,589 - +0.0 543,594 + -0.2 543,594 + -1.5 543,594 + -0.8 543,595 - +0.7 543,595 - +0.9 543,599 - +0.0 543,614 + bsmA MCAODC_02685 0.14 +1.5 543,615 - bsmA MCAODC_02685 0.14 +0.0 543,617 + bsmA MCAODC_02685 0.15 +1.0 543,617 + bsmA MCAODC_02685 0.15 -0.8 543,618 - bsmA MCAODC_02685 0.15 -0.8 543,618 - bsmA MCAODC_02685 0.15 -0.6 543,632 + bsmA MCAODC_02685 0.19 -0.6 543,632 + bsmA MCAODC_02685 0.19 -0.1 543,633 - bsmA MCAODC_02685 0.20 -0.4 543,633 - bsmA MCAODC_02685 0.20 +0.4
Or see this region's nucleotide sequence