Strain Fitness in Escherichia coli ECRC101 around MCAODC_02350

Experiment: WM_Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_02345 and tabA are separated by 122 nucleotidestabA and bdcR are separated by 144 nucleotidesbdcR and bdcA are separated by 70 nucleotides MCAODC_02345: MCAODC_02345 - Uncharacterized protein YjgL, at 481,371 to 483,107 _02345 MCAODC_02350: tabA - toxin-antitoxin biofilm protein TabA, at 483,230 to 483,682 tabA MCAODC_02355: bdcR - HTH-type transcriptional repressor BdcR, at 483,827 to 484,420 bdcR MCAODC_02360: bdcA - SDR family oxidoreductase, at 484,491 to 485,204 bdcA Position (kb) 483 484Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 482.259 kb on + strand, within MCAODC_02345at 482.279 kb on + strand, within MCAODC_02345at 482.279 kb on + strand, within MCAODC_02345at 482.317 kb on - strand, within MCAODC_02345at 482.325 kb on + strand, within MCAODC_02345at 482.460 kb on + strand, within MCAODC_02345at 482.547 kb on - strand, within MCAODC_02345at 482.729 kb on + strand, within MCAODC_02345at 483.137 kb on + strandat 483.212 kb on - strandat 483.298 kb on + strand, within tabAat 483.347 kb on - strand, within tabAat 483.399 kb on - strand, within tabAat 483.484 kb on - strand, within tabAat 483.495 kb on + strand, within tabAat 483.529 kb on + strand, within tabAat 483.546 kb on + strand, within tabAat 483.546 kb on + strand, within tabAat 483.613 kb on + strand, within tabAat 483.613 kb on + strand, within tabAat 483.613 kb on + strand, within tabAat 483.614 kb on - strand, within tabAat 483.614 kb on - strand, within tabAat 483.633 kb on - strand, within tabAat 483.667 kb on + strandat 483.668 kb on - strandat 483.769 kb on - strandat 483.776 kb on + strandat 483.841 kb on + strandat 483.849 kb on - strandat 483.937 kb on + strand, within bdcRat 483.943 kb on + strand, within bdcRat 483.944 kb on - strand, within bdcRat 483.988 kb on + strand, within bdcRat 483.990 kb on + strand, within bdcRat 483.990 kb on + strand, within bdcRat 483.990 kb on + strand, within bdcRat 483.990 kb on + strand, within bdcRat 483.990 kb on + strand, within bdcRat 483.990 kb on + strand, within bdcRat 483.991 kb on - strand, within bdcRat 483.996 kb on + strand, within bdcRat 483.996 kb on + strand, within bdcRat 483.996 kb on + strand, within bdcRat 483.996 kb on + strand, within bdcRat 483.996 kb on + strand, within bdcRat 483.997 kb on - strand, within bdcRat 484.021 kb on - strand, within bdcRat 484.021 kb on - strand, within bdcRat 484.021 kb on - strand, within bdcRat 484.023 kb on + strand, within bdcRat 484.037 kb on - strand, within bdcRat 484.061 kb on - strand, within bdcRat 484.061 kb on - strand, within bdcRat 484.061 kb on - strand, within bdcRat 484.061 kb on - strand, within bdcRat 484.082 kb on - strand, within bdcRat 484.108 kb on + strand, within bdcRat 484.108 kb on + strand, within bdcRat 484.110 kb on + strand, within bdcRat 484.110 kb on + strand, within bdcRat 484.110 kb on + strand, within bdcRat 484.111 kb on - strand, within bdcRat 484.131 kb on - strand, within bdcRat 484.193 kb on - strand, within bdcRat 484.209 kb on + strand, within bdcRat 484.209 kb on + strand, within bdcRat 484.209 kb on + strand, within bdcRat 484.209 kb on + strand, within bdcRat 484.209 kb on + strand, within bdcRat 484.210 kb on - strand, within bdcRat 484.210 kb on - strand, within bdcRat 484.210 kb on - strand, within bdcRat 484.210 kb on - strand, within bdcRat 484.220 kb on + strand, within bdcRat 484.221 kb on - strand, within bdcRat 484.260 kb on + strand, within bdcRat 484.276 kb on + strand, within bdcRat 484.444 kb on + strandat 484.445 kb on - strandat 484.467 kb on + strandat 484.502 kb on + strandat 484.508 kb on + strandat 484.509 kb on - strandat 484.558 kb on + strandat 484.558 kb on + strandat 484.558 kb on + strandat 484.558 kb on + strandat 484.559 kb on - strandat 484.559 kb on - strandat 484.559 kb on - strandat 484.588 kb on + strand, within bdcAat 484.588 kb on + strand, within bdcAat 484.588 kb on + strand, within bdcAat 484.589 kb on - strand, within bdcAat 484.589 kb on - strand, within bdcAat 484.589 kb on - strand, within bdcAat 484.599 kb on + strand, within bdcAat 484.657 kb on + strand, within bdcAat 484.658 kb on - strand, within bdcAat 484.658 kb on - strand, within bdcAat 484.658 kb on - strand, within bdcAat 484.658 kb on - strand, within bdcAat 484.658 kb on - strand, within bdcAat 484.661 kb on + strand, within bdcAat 484.661 kb on + strand, within bdcAat 484.667 kb on + strand, within bdcAat 484.667 kb on + strand, within bdcAat 484.667 kb on + strand, within bdcAat 484.668 kb on - strand, within bdcAat 484.668 kb on - strand, within bdcA

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas09
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482,259 + MCAODC_02345 0.51 -3.3
482,279 + MCAODC_02345 0.52 +0.7
482,279 + MCAODC_02345 0.52 -0.2
482,317 - MCAODC_02345 0.54 +0.5
482,325 + MCAODC_02345 0.55 -1.0
482,460 + MCAODC_02345 0.63 -1.6
482,547 - MCAODC_02345 0.68 +0.5
482,729 + MCAODC_02345 0.78 +0.5
483,137 + +1.7
483,212 - +2.0
483,298 + tabA MCAODC_02350 0.15 +1.5
483,347 - tabA MCAODC_02350 0.26 -0.0
483,399 - tabA MCAODC_02350 0.37 -2.6
483,484 - tabA MCAODC_02350 0.56 +0.2
483,495 + tabA MCAODC_02350 0.58 +2.0
483,529 + tabA MCAODC_02350 0.66 -0.6
483,546 + tabA MCAODC_02350 0.70 -0.4
483,546 + tabA MCAODC_02350 0.70 -0.5
483,613 + tabA MCAODC_02350 0.85 +0.0
483,613 + tabA MCAODC_02350 0.85 +0.1
483,613 + tabA MCAODC_02350 0.85 +1.1
483,614 - tabA MCAODC_02350 0.85 +0.1
483,614 - tabA MCAODC_02350 0.85 +1.2
483,633 - tabA MCAODC_02350 0.89 +0.3
483,667 + +1.2
483,668 - -0.4
483,769 - +0.2
483,776 + -2.7
483,841 + -0.4
483,849 - +0.2
483,937 + bdcR MCAODC_02355 0.19 +0.2
483,943 + bdcR MCAODC_02355 0.20 +1.0
483,944 - bdcR MCAODC_02355 0.20 -1.2
483,988 + bdcR MCAODC_02355 0.27 +0.8
483,990 + bdcR MCAODC_02355 0.27 -0.1
483,990 + bdcR MCAODC_02355 0.27 -0.3
483,990 + bdcR MCAODC_02355 0.27 +0.6
483,990 + bdcR MCAODC_02355 0.27 +0.1
483,990 + bdcR MCAODC_02355 0.27 -0.1
483,990 + bdcR MCAODC_02355 0.27 -0.1
483,991 - bdcR MCAODC_02355 0.28 +1.3
483,996 + bdcR MCAODC_02355 0.28 +1.6
483,996 + bdcR MCAODC_02355 0.28 +0.2
483,996 + bdcR MCAODC_02355 0.28 +1.1
483,996 + bdcR MCAODC_02355 0.28 +0.2
483,996 + bdcR MCAODC_02355 0.28 -0.0
483,997 - bdcR MCAODC_02355 0.29 -0.5
484,021 - bdcR MCAODC_02355 0.33 +0.0
484,021 - bdcR MCAODC_02355 0.33 +0.3
484,021 - bdcR MCAODC_02355 0.33 -0.9
484,023 + bdcR MCAODC_02355 0.33 +0.4
484,037 - bdcR MCAODC_02355 0.35 +0.1
484,061 - bdcR MCAODC_02355 0.39 +0.3
484,061 - bdcR MCAODC_02355 0.39 -0.1
484,061 - bdcR MCAODC_02355 0.39 -0.1
484,061 - bdcR MCAODC_02355 0.39 -0.8
484,082 - bdcR MCAODC_02355 0.43 +0.1
484,108 + bdcR MCAODC_02355 0.47 -0.3
484,108 + bdcR MCAODC_02355 0.47 -1.8
484,110 + bdcR MCAODC_02355 0.48 +2.1
484,110 + bdcR MCAODC_02355 0.48 +0.4
484,110 + bdcR MCAODC_02355 0.48 +0.3
484,111 - bdcR MCAODC_02355 0.48 +0.8
484,131 - bdcR MCAODC_02355 0.51 -1.8
484,193 - bdcR MCAODC_02355 0.62 -1.6
484,209 + bdcR MCAODC_02355 0.64 +1.0
484,209 + bdcR MCAODC_02355 0.64 +0.6
484,209 + bdcR MCAODC_02355 0.64 +0.2
484,209 + bdcR MCAODC_02355 0.64 +0.2
484,209 + bdcR MCAODC_02355 0.64 -0.2
484,210 - bdcR MCAODC_02355 0.64 +0.3
484,210 - bdcR MCAODC_02355 0.64 +1.8
484,210 - bdcR MCAODC_02355 0.64 -0.1
484,210 - bdcR MCAODC_02355 0.64 -2.7
484,220 + bdcR MCAODC_02355 0.66 +0.6
484,221 - bdcR MCAODC_02355 0.66 +1.2
484,260 + bdcR MCAODC_02355 0.73 +0.2
484,276 + bdcR MCAODC_02355 0.76 +0.3
484,444 + +0.2
484,445 - +0.4
484,467 + -2.3
484,502 + -1.3
484,508 + -0.4
484,509 - -2.7
484,558 + +1.3
484,558 + -3.8
484,558 + +0.7
484,558 + +0.7
484,559 - +0.8
484,559 - -1.8
484,559 - +0.9
484,588 + bdcA MCAODC_02360 0.14 -0.8
484,588 + bdcA MCAODC_02360 0.14 -0.9
484,588 + bdcA MCAODC_02360 0.14 +0.0
484,589 - bdcA MCAODC_02360 0.14 -1.2
484,589 - bdcA MCAODC_02360 0.14 +1.3
484,589 - bdcA MCAODC_02360 0.14 +1.1
484,599 + bdcA MCAODC_02360 0.15 +0.3
484,657 + bdcA MCAODC_02360 0.23 +0.9
484,658 - bdcA MCAODC_02360 0.23 +0.5
484,658 - bdcA MCAODC_02360 0.23 -0.5
484,658 - bdcA MCAODC_02360 0.23 +1.4
484,658 - bdcA MCAODC_02360 0.23 -0.5
484,658 - bdcA MCAODC_02360 0.23 +0.4
484,661 + bdcA MCAODC_02360 0.24 +0.3
484,661 + bdcA MCAODC_02360 0.24 +1.1
484,667 + bdcA MCAODC_02360 0.25 -1.4
484,667 + bdcA MCAODC_02360 0.25 -0.1
484,667 + bdcA MCAODC_02360 0.25 +1.4
484,668 - bdcA MCAODC_02360 0.25 -0.0
484,668 - bdcA MCAODC_02360 0.25 +0.6

Or see this region's nucleotide sequence