Strain Fitness in Escherichia coli ECRC101 around MCAODC_01880
Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | WM_Bas09 |
|---|---|---|---|---|---|
| remove | |||||
| 360,468 | - | lgoD | MCAODC_01875 | 0.19 | +0.5 |
| 360,519 | + | lgoD | MCAODC_01875 | 0.24 | +0.1 |
| 360,520 | - | lgoD | MCAODC_01875 | 0.24 | +0.9 |
| 360,520 | - | lgoD | MCAODC_01875 | 0.24 | +0.4 |
| 360,520 | - | lgoD | MCAODC_01875 | 0.24 | -1.1 |
| 360,558 | - | lgoD | MCAODC_01875 | 0.28 | -0.8 |
| 360,575 | + | lgoD | MCAODC_01875 | 0.30 | -3.1 |
| 360,576 | - | lgoD | MCAODC_01875 | 0.30 | +0.9 |
| 360,925 | + | lgoD | MCAODC_01875 | 0.64 | +1.1 |
| 360,932 | + | lgoD | MCAODC_01875 | 0.65 | -2.1 |
| 360,933 | - | lgoD | MCAODC_01875 | 0.65 | +0.4 |
| 361,027 | + | lgoD | MCAODC_01875 | 0.74 | +1.0 |
| 361,027 | + | lgoD | MCAODC_01875 | 0.74 | +1.0 |
| 361,102 | - | lgoD | MCAODC_01875 | 0.81 | -0.6 |
| 361,102 | - | lgoD | MCAODC_01875 | 0.81 | -0.4 |
| 361,126 | + | lgoD | MCAODC_01875 | 0.84 | +0.2 |
| 361,228 | - | -0.5 | |||
| 361,384 | + | +0.0 | |||
| 361,430 | + | +2.9 | |||
| 361,485 | - | +1.8 | |||
| 361,485 | - | -0.5 | |||
| 361,500 | - | -0.1 | |||
| 361,542 | + | lgoR | MCAODC_01880 | 0.12 | +0.3 |
| 361,542 | + | lgoR | MCAODC_01880 | 0.12 | +0.8 |
| 361,542 | + | lgoR | MCAODC_01880 | 0.12 | +1.7 |
| 361,543 | - | lgoR | MCAODC_01880 | 0.12 | -1.1 |
| 361,543 | - | lgoR | MCAODC_01880 | 0.12 | +0.4 |
| 361,543 | - | lgoR | MCAODC_01880 | 0.12 | +0.5 |
| 361,559 | + | lgoR | MCAODC_01880 | 0.14 | +1.6 |
| 361,560 | - | lgoR | MCAODC_01880 | 0.14 | -0.1 |
| 361,572 | - | lgoR | MCAODC_01880 | 0.15 | +0.3 |
| 361,572 | - | lgoR | MCAODC_01880 | 0.15 | +0.8 |
| 361,603 | + | lgoR | MCAODC_01880 | 0.19 | +1.1 |
| 361,623 | + | lgoR | MCAODC_01880 | 0.21 | +0.9 |
| 361,623 | + | lgoR | MCAODC_01880 | 0.21 | -1.6 |
| 361,628 | + | lgoR | MCAODC_01880 | 0.22 | +0.2 |
| 361,628 | + | lgoR | MCAODC_01880 | 0.22 | -1.9 |
| 361,629 | - | lgoR | MCAODC_01880 | 0.22 | -0.2 |
| 361,629 | - | lgoR | MCAODC_01880 | 0.22 | -0.9 |
| 361,629 | - | lgoR | MCAODC_01880 | 0.22 | -1.3 |
| 361,670 | + | lgoR | MCAODC_01880 | 0.26 | -0.1 |
| 361,671 | - | lgoR | MCAODC_01880 | 0.26 | -1.5 |
| 361,727 | - | lgoR | MCAODC_01880 | 0.32 | +1.6 |
| 361,815 | + | lgoR | MCAODC_01880 | 0.42 | -1.4 |
| 361,838 | + | lgoR | MCAODC_01880 | 0.44 | -1.2 |
| 361,838 | + | lgoR | MCAODC_01880 | 0.44 | -0.1 |
| 361,839 | - | lgoR | MCAODC_01880 | 0.45 | -2.3 |
| 362,183 | + | lgoR | MCAODC_01880 | 0.82 | +1.9 |
| 362,184 | - | lgoR | MCAODC_01880 | 0.82 | -1.5 |
| 362,196 | - | lgoR | MCAODC_01880 | 0.84 | -1.4 |
| 362,216 | + | lgoR | MCAODC_01880 | 0.86 | -2.2 |
| 362,216 | + | lgoR | MCAODC_01880 | 0.86 | -1.2 |
| 362,216 | + | lgoR | MCAODC_01880 | 0.86 | -1.4 |
| 362,217 | - | lgoR | MCAODC_01880 | 0.86 | -0.7 |
| 362,217 | - | lgoR | MCAODC_01880 | 0.86 | -0.3 |
| 362,343 | + | -2.8 | |||
| 362,372 | - | -0.9 | |||
| 362,399 | - | -0.1 | |||
| 362,424 | + | +0.7 | |||
| 362,424 | + | -0.0 | |||
| 362,424 | + | -1.1 | |||
| 362,425 | - | -1.4 | |||
| 362,425 | - | +0.2 | |||
| 362,522 | + | +1.3 | |||
| 362,523 | - | -1.5 | |||
| 362,546 | + | +1.1 | |||
| 362,622 | + | +0.3 | |||
| 362,723 | - | lgoT | MCAODC_01885 | 0.12 | -2.8 |
| 362,868 | + | lgoT | MCAODC_01885 | 0.23 | +0.5 |
| 362,949 | + | lgoT | MCAODC_01885 | 0.29 | +1.4 |
| 362,950 | - | lgoT | MCAODC_01885 | 0.29 | -1.2 |
| 363,014 | + | lgoT | MCAODC_01885 | 0.33 | +1.5 |
| 363,015 | - | lgoT | MCAODC_01885 | 0.33 | +1.3 |
| 363,101 | + | lgoT | MCAODC_01885 | 0.40 | +1.3 |
| 363,102 | - | lgoT | MCAODC_01885 | 0.40 | +0.8 |
| 363,102 | - | lgoT | MCAODC_01885 | 0.40 | -0.7 |
| 363,157 | - | lgoT | MCAODC_01885 | 0.44 | +0.5 |
| 363,157 | - | lgoT | MCAODC_01885 | 0.44 | -1.4 |
| 363,160 | - | lgoT | MCAODC_01885 | 0.44 | -0.9 |
| 363,199 | + | lgoT | MCAODC_01885 | 0.47 | -0.4 |
| 363,199 | + | lgoT | MCAODC_01885 | 0.47 | -0.4 |
| 363,199 | + | lgoT | MCAODC_01885 | 0.47 | -2.6 |
| 363,199 | + | lgoT | MCAODC_01885 | 0.47 | +1.7 |
| 363,199 | + | lgoT | MCAODC_01885 | 0.47 | +0.1 |
| 363,200 | - | lgoT | MCAODC_01885 | 0.47 | +0.1 |
| 363,200 | - | lgoT | MCAODC_01885 | 0.47 | +1.4 |
| 363,200 | - | lgoT | MCAODC_01885 | 0.47 | +0.3 |
| 363,201 | + | lgoT | MCAODC_01885 | 0.47 | +1.2 |
| 363,201 | + | lgoT | MCAODC_01885 | 0.47 | -0.4 |
| 363,201 | + | lgoT | MCAODC_01885 | 0.47 | -1.3 |
| 363,201 | + | lgoT | MCAODC_01885 | 0.47 | -0.1 |
| 363,201 | + | lgoT | MCAODC_01885 | 0.47 | +0.5 |
| 363,201 | + | lgoT | MCAODC_01885 | 0.47 | +0.2 |
| 363,202 | - | lgoT | MCAODC_01885 | 0.47 | +0.3 |
| 363,202 | - | lgoT | MCAODC_01885 | 0.47 | +0.6 |
| 363,202 | - | lgoT | MCAODC_01885 | 0.47 | +0.9 |
| 363,202 | - | lgoT | MCAODC_01885 | 0.47 | -0.2 |
| 363,202 | - | lgoT | MCAODC_01885 | 0.47 | -0.3 |
| 363,202 | - | lgoT | MCAODC_01885 | 0.47 | -0.4 |
| 363,202 | - | lgoT | MCAODC_01885 | 0.47 | +1.8 |
| 363,202 | - | lgoT | MCAODC_01885 | 0.47 | +0.4 |
| 363,202 | - | lgoT | MCAODC_01885 | 0.47 | +0.6 |
| 363,227 | + | lgoT | MCAODC_01885 | 0.49 | -2.4 |
| 363,228 | - | lgoT | MCAODC_01885 | 0.49 | -0.3 |
| 363,228 | - | lgoT | MCAODC_01885 | 0.49 | +0.8 |
| 363,253 | + | lgoT | MCAODC_01885 | 0.51 | -0.4 |
| 363,253 | + | lgoT | MCAODC_01885 | 0.51 | -0.3 |
| 363,254 | - | lgoT | MCAODC_01885 | 0.51 | -0.0 |
| 363,267 | + | lgoT | MCAODC_01885 | 0.52 | +0.8 |
| 363,325 | - | lgoT | MCAODC_01885 | 0.56 | -0.6 |
Or see this region's nucleotide sequence