Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lplA and MCAODC_01725 are separated by 31 nucleotides MCAODC_01725 and deoD are separated by 160 nucleotides deoD and deoB are separated by 56 nucleotides
MCAODC_01720: lplA - YtjB family periplasmic protein, at 334,053 to 335,741
lplA
MCAODC_01725: MCAODC_01725 - transcriptional regulator, at 335,773 to 336,036
_01725
MCAODC_01730: deoD - purine-nucleoside phosphorylase, at 336,197 to 336,916
deoD
MCAODC_01735: deoB - phosphopentomutase, at 336,973 to 338,196
deoB
Position (kb) 335
336
337 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 334.793 kb on + strand, within lplA at 334.794 kb on - strand, within lplA at 334.858 kb on + strand, within lplA at 334.858 kb on + strand, within lplA at 334.858 kb on + strand, within lplA at 334.892 kb on + strand, within lplA at 334.892 kb on + strand, within lplA at 334.892 kb on + strand, within lplA at 334.892 kb on + strand, within lplA at 334.916 kb on + strand, within lplA at 334.916 kb on + strand, within lplA at 334.976 kb on + strand, within lplA at 334.977 kb on - strand, within lplA at 335.011 kb on - strand, within lplA at 335.087 kb on + strand, within lplA at 335.202 kb on - strand, within lplA at 335.217 kb on + strand, within lplA at 335.258 kb on + strand, within lplA at 335.258 kb on + strand, within lplA at 335.258 kb on + strand, within lplA at 335.259 kb on - strand, within lplA at 335.259 kb on - strand, within lplA at 335.643 kb on - strand at 335.701 kb on + strand at 335.701 kb on + strand at 335.739 kb on + strand at 335.739 kb on + strand at 335.740 kb on - strand at 335.756 kb on + strand at 335.772 kb on + strand at 335.772 kb on + strand at 335.813 kb on + strand, within MCAODC_01725 at 335.829 kb on + strand, within MCAODC_01725 at 335.830 kb on - strand, within MCAODC_01725 at 335.863 kb on - strand, within MCAODC_01725 at 335.868 kb on - strand, within MCAODC_01725 at 335.882 kb on + strand, within MCAODC_01725 at 335.882 kb on + strand, within MCAODC_01725 at 335.883 kb on - strand, within MCAODC_01725 at 335.887 kb on - strand, within MCAODC_01725 at 335.887 kb on - strand, within MCAODC_01725 at 335.887 kb on - strand, within MCAODC_01725 at 335.894 kb on + strand, within MCAODC_01725 at 335.894 kb on + strand, within MCAODC_01725 at 335.943 kb on + strand, within MCAODC_01725 at 335.944 kb on - strand, within MCAODC_01725 at 336.031 kb on - strand at 336.031 kb on - strand at 336.054 kb on + strand at 336.054 kb on + strand at 336.055 kb on - strand at 336.128 kb on - strand at 336.131 kb on + strand at 336.131 kb on + strand at 336.134 kb on + strand at 336.135 kb on - strand at 336.165 kb on + strand at 336.166 kb on - strand at 336.198 kb on + strand at 336.199 kb on - strand at 336.358 kb on - strand, within deoD at 336.358 kb on - strand, within deoD at 336.396 kb on + strand, within deoD at 336.397 kb on - strand, within deoD at 336.397 kb on - strand, within deoD at 336.500 kb on + strand, within deoD at 336.500 kb on + strand, within deoD at 336.500 kb on + strand, within deoD at 336.501 kb on - strand, within deoD at 336.501 kb on - strand, within deoD at 336.509 kb on - strand, within deoD at 336.554 kb on - strand, within deoD at 336.620 kb on + strand, within deoD at 336.620 kb on + strand, within deoD at 336.620 kb on + strand, within deoD at 336.699 kb on + strand, within deoD at 336.700 kb on - strand, within deoD at 336.700 kb on - strand, within deoD at 336.759 kb on + strand, within deoD at 336.759 kb on + strand, within deoD at 336.760 kb on - strand, within deoD at 336.760 kb on - strand, within deoD at 336.764 kb on - strand, within deoD at 336.764 kb on - strand, within deoD at 336.832 kb on + strand, within deoD at 336.832 kb on + strand, within deoD at 336.832 kb on + strand, within deoD at 336.833 kb on - strand, within deoD at 336.834 kb on + strand, within deoD at 336.834 kb on + strand, within deoD at 336.835 kb on - strand, within deoD at 336.835 kb on - strand, within deoD at 336.898 kb on + strand at 336.898 kb on + strand at 336.898 kb on + strand at 336.899 kb on - strand at 336.899 kb on - strand at 336.938 kb on + strand at 336.939 kb on - strand at 336.939 kb on - strand at 337.016 kb on + strand at 337.017 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 334,793 + lplA MCAODC_01720 0.44 +0.2 334,794 - lplA MCAODC_01720 0.44 +0.8 334,858 + lplA MCAODC_01720 0.48 +0.2 334,858 + lplA MCAODC_01720 0.48 -0.8 334,858 + lplA MCAODC_01720 0.48 -2.8 334,892 + lplA MCAODC_01720 0.50 +0.3 334,892 + lplA MCAODC_01720 0.50 -1.2 334,892 + lplA MCAODC_01720 0.50 +0.4 334,892 + lplA MCAODC_01720 0.50 -0.5 334,916 + lplA MCAODC_01720 0.51 -0.4 334,916 + lplA MCAODC_01720 0.51 +0.4 334,976 + lplA MCAODC_01720 0.55 +0.5 334,977 - lplA MCAODC_01720 0.55 -0.4 335,011 - lplA MCAODC_01720 0.57 -0.8 335,087 + lplA MCAODC_01720 0.61 +0.2 335,202 - lplA MCAODC_01720 0.68 +1.3 335,217 + lplA MCAODC_01720 0.69 +0.8 335,258 + lplA MCAODC_01720 0.71 +1.7 335,258 + lplA MCAODC_01720 0.71 +1.4 335,258 + lplA MCAODC_01720 0.71 +0.1 335,259 - lplA MCAODC_01720 0.71 +0.2 335,259 - lplA MCAODC_01720 0.71 +0.3 335,643 - -0.1 335,701 + +0.4 335,701 + -1.6 335,739 + +0.2 335,739 + +1.0 335,740 - -1.9 335,756 + -0.5 335,772 + -0.2 335,772 + +0.4 335,813 + MCAODC_01725 0.15 +1.9 335,829 + MCAODC_01725 0.21 +0.5 335,830 - MCAODC_01725 0.22 -0.3 335,863 - MCAODC_01725 0.34 +0.3 335,868 - MCAODC_01725 0.36 -0.1 335,882 + MCAODC_01725 0.41 -3.8 335,882 + MCAODC_01725 0.41 -0.3 335,883 - MCAODC_01725 0.42 -0.2 335,887 - MCAODC_01725 0.43 -1.0 335,887 - MCAODC_01725 0.43 -0.3 335,887 - MCAODC_01725 0.43 +0.6 335,894 + MCAODC_01725 0.46 -2.3 335,894 + MCAODC_01725 0.46 +0.5 335,943 + MCAODC_01725 0.64 -0.4 335,944 - MCAODC_01725 0.65 +0.6 336,031 - +0.5 336,031 - +0.3 336,054 + -1.3 336,054 + +0.6 336,055 - -1.5 336,128 - -0.1 336,131 + -1.3 336,131 + +0.6 336,134 + +0.1 336,135 - -1.5 336,165 + +0.2 336,166 - +0.3 336,198 + +0.9 336,199 - +0.5 336,358 - deoD MCAODC_01730 0.22 +1.9 336,358 - deoD MCAODC_01730 0.22 -0.0 336,396 + deoD MCAODC_01730 0.28 -0.1 336,397 - deoD MCAODC_01730 0.28 -2.0 336,397 - deoD MCAODC_01730 0.28 +0.4 336,500 + deoD MCAODC_01730 0.42 -2.6 336,500 + deoD MCAODC_01730 0.42 -0.3 336,500 + deoD MCAODC_01730 0.42 +1.3 336,501 - deoD MCAODC_01730 0.42 +0.1 336,501 - deoD MCAODC_01730 0.42 +0.8 336,509 - deoD MCAODC_01730 0.43 +0.4 336,554 - deoD MCAODC_01730 0.50 +1.0 336,620 + deoD MCAODC_01730 0.59 +0.9 336,620 + deoD MCAODC_01730 0.59 -1.6 336,620 + deoD MCAODC_01730 0.59 -1.0 336,699 + deoD MCAODC_01730 0.70 -1.5 336,700 - deoD MCAODC_01730 0.70 -0.5 336,700 - deoD MCAODC_01730 0.70 +0.6 336,759 + deoD MCAODC_01730 0.78 +1.6 336,759 + deoD MCAODC_01730 0.78 +0.2 336,760 - deoD MCAODC_01730 0.78 +0.8 336,760 - deoD MCAODC_01730 0.78 -2.1 336,764 - deoD MCAODC_01730 0.79 -2.5 336,764 - deoD MCAODC_01730 0.79 +0.1 336,832 + deoD MCAODC_01730 0.88 -2.3 336,832 + deoD MCAODC_01730 0.88 +0.3 336,832 + deoD MCAODC_01730 0.88 +0.7 336,833 - deoD MCAODC_01730 0.88 -0.7 336,834 + deoD MCAODC_01730 0.88 +0.6 336,834 + deoD MCAODC_01730 0.88 -0.0 336,835 - deoD MCAODC_01730 0.89 -0.3 336,835 - deoD MCAODC_01730 0.89 +0.6 336,898 + +1.6 336,898 + +0.3 336,898 + -0.4 336,899 - +1.6 336,899 - +0.0 336,938 + -0.3 336,939 - +0.3 336,939 - -2.4 337,016 + -1.4 337,017 - -1.4
Or see this region's nucleotide sequence