Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_03206

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_03206 and MPMX26_03207 are separated by 21 nucleotidesMPMX26_03207 and MPMX26_03208 overlap by 1 nucleotides MPMX26_03206: MPMX26_03206 - hypothetical protein, at 58,668 to 58,922 _03206 MPMX26_03207: MPMX26_03207 - hypothetical protein, at 58,944 to 59,648 _03207 MPMX26_03208: MPMX26_03208 - hypothetical protein, at 59,648 to 60,037 _03208 Position (kb) 58 59Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 57.774 kb on - strandat 57.791 kb on - strandat 57.810 kb on - strandat 57.815 kb on - strandat 57.839 kb on - strandat 57.850 kb on - strandat 57.850 kb on - strandat 57.850 kb on - strandat 57.857 kb on - strandat 57.881 kb on - strandat 57.887 kb on - strandat 57.898 kb on - strandat 57.925 kb on + strandat 58.106 kb on - strandat 58.126 kb on - strandat 58.144 kb on - strandat 58.262 kb on + strandat 58.305 kb on + strandat 58.865 kb on + strand, within MPMX26_03206at 58.865 kb on + strand, within MPMX26_03206at 58.880 kb on + strand, within MPMX26_03206at 59.056 kb on + strand, within MPMX26_03207at 59.056 kb on + strand, within MPMX26_03207at 59.056 kb on + strand, within MPMX26_03207at 59.064 kb on - strand, within MPMX26_03207at 59.077 kb on + strand, within MPMX26_03207at 59.087 kb on + strand, within MPMX26_03207at 59.107 kb on + strand, within MPMX26_03207at 59.107 kb on + strand, within MPMX26_03207at 59.107 kb on + strand, within MPMX26_03207at 59.107 kb on + strand, within MPMX26_03207at 59.107 kb on + strand, within MPMX26_03207at 59.107 kb on + strand, within MPMX26_03207at 59.115 kb on + strand, within MPMX26_03207at 59.141 kb on + strand, within MPMX26_03207at 59.151 kb on + strand, within MPMX26_03207at 59.162 kb on + strand, within MPMX26_03207at 59.235 kb on + strand, within MPMX26_03207at 59.262 kb on + strand, within MPMX26_03207at 59.263 kb on + strand, within MPMX26_03207at 59.289 kb on + strand, within MPMX26_03207at 59.291 kb on + strand, within MPMX26_03207at 59.291 kb on + strand, within MPMX26_03207at 59.294 kb on + strand, within MPMX26_03207at 59.323 kb on + strand, within MPMX26_03207at 59.384 kb on + strand, within MPMX26_03207at 59.405 kb on + strand, within MPMX26_03207at 59.430 kb on + strand, within MPMX26_03207at 59.435 kb on + strand, within MPMX26_03207at 59.468 kb on + strand, within MPMX26_03207at 59.473 kb on + strand, within MPMX26_03207at 59.478 kb on + strand, within MPMX26_03207at 59.486 kb on + strand, within MPMX26_03207at 59.491 kb on + strand, within MPMX26_03207at 59.491 kb on + strand, within MPMX26_03207at 59.494 kb on + strand, within MPMX26_03207at 59.496 kb on + strand, within MPMX26_03207at 59.509 kb on + strand, within MPMX26_03207at 59.513 kb on + strand, within MPMX26_03207at 59.513 kb on + strand, within MPMX26_03207at 59.519 kb on + strand, within MPMX26_03207at 59.519 kb on + strand, within MPMX26_03207at 59.521 kb on + strand, within MPMX26_03207at 59.521 kb on + strand, within MPMX26_03207at 59.529 kb on + strand, within MPMX26_03207at 59.599 kb on + strandat 59.657 kb on + strandat 59.657 kb on + strandat 59.657 kb on + strandat 59.657 kb on + strandat 59.657 kb on + strandat 59.657 kb on + strandat 59.657 kb on + strandat 59.657 kb on + strandat 59.680 kb on + strandat 59.680 kb on + strandat 59.690 kb on + strand, within MPMX26_03208at 59.760 kb on + strand, within MPMX26_03208at 59.760 kb on + strand, within MPMX26_03208at 59.760 kb on + strand, within MPMX26_03208at 59.815 kb on + strand, within MPMX26_03208at 59.815 kb on + strand, within MPMX26_03208at 59.824 kb on + strand, within MPMX26_03208at 59.834 kb on + strand, within MPMX26_03208at 59.834 kb on + strand, within MPMX26_03208at 59.834 kb on + strand, within MPMX26_03208at 59.834 kb on + strand, within MPMX26_03208

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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57,774 - +0.5
57,791 - +0.3
57,810 - -0.6
57,815 - +0.4
57,839 - -1.1
57,850 - +0.0
57,850 - -0.7
57,850 - +0.4
57,857 - +0.7
57,881 - +0.4
57,887 - +0.2
57,898 - +0.4
57,925 + -0.1
58,106 - +0.4
58,126 - +0.3
58,144 - -0.1
58,262 + -0.1
58,305 + +0.5
58,865 + MPMX26_03206 0.77 -2.2
58,865 + MPMX26_03206 0.77 -4.0
58,880 + MPMX26_03206 0.83 +0.0
59,056 + MPMX26_03207 0.16 +0.4
59,056 + MPMX26_03207 0.16 +1.2
59,056 + MPMX26_03207 0.16 -1.1
59,064 - MPMX26_03207 0.17 +0.7
59,077 + MPMX26_03207 0.19 +0.1
59,087 + MPMX26_03207 0.20 -0.0
59,107 + MPMX26_03207 0.23 -0.0
59,107 + MPMX26_03207 0.23 -2.4
59,107 + MPMX26_03207 0.23 -0.2
59,107 + MPMX26_03207 0.23 -0.2
59,107 + MPMX26_03207 0.23 +0.1
59,107 + MPMX26_03207 0.23 -0.1
59,115 + MPMX26_03207 0.24 -0.4
59,141 + MPMX26_03207 0.28 +0.1
59,151 + MPMX26_03207 0.29 +0.1
59,162 + MPMX26_03207 0.31 -0.3
59,235 + MPMX26_03207 0.41 -0.5
59,262 + MPMX26_03207 0.45 -0.1
59,263 + MPMX26_03207 0.45 -0.5
59,289 + MPMX26_03207 0.49 -0.6
59,291 + MPMX26_03207 0.49 -0.5
59,291 + MPMX26_03207 0.49 -0.5
59,294 + MPMX26_03207 0.50 +0.0
59,323 + MPMX26_03207 0.54 -1.4
59,384 + MPMX26_03207 0.62 -0.2
59,405 + MPMX26_03207 0.65 -0.7
59,430 + MPMX26_03207 0.69 +0.5
59,435 + MPMX26_03207 0.70 -0.1
59,468 + MPMX26_03207 0.74 -0.8
59,473 + MPMX26_03207 0.75 -0.2
59,478 + MPMX26_03207 0.76 -0.1
59,486 + MPMX26_03207 0.77 +0.2
59,491 + MPMX26_03207 0.78 -0.2
59,491 + MPMX26_03207 0.78 +0.1
59,494 + MPMX26_03207 0.78 -0.0
59,496 + MPMX26_03207 0.78 -0.6
59,509 + MPMX26_03207 0.80 +0.2
59,513 + MPMX26_03207 0.81 -0.6
59,513 + MPMX26_03207 0.81 -0.2
59,519 + MPMX26_03207 0.82 +1.0
59,519 + MPMX26_03207 0.82 -0.6
59,521 + MPMX26_03207 0.82 +0.2
59,521 + MPMX26_03207 0.82 -0.8
59,529 + MPMX26_03207 0.83 +0.5
59,599 + +0.1
59,657 + -0.7
59,657 + -0.2
59,657 + -1.2
59,657 + -0.2
59,657 + -0.1
59,657 + -0.4
59,657 + +0.1
59,657 + +0.6
59,680 + -0.1
59,680 + -0.0
59,690 + MPMX26_03208 0.11 -0.2
59,760 + MPMX26_03208 0.29 -0.3
59,760 + MPMX26_03208 0.29 -0.1
59,760 + MPMX26_03208 0.29 -0.4
59,815 + MPMX26_03208 0.43 +0.1
59,815 + MPMX26_03208 0.43 -0.8
59,824 + MPMX26_03208 0.45 +0.1
59,834 + MPMX26_03208 0.48 -1.1
59,834 + MPMX26_03208 0.48 -0.1
59,834 + MPMX26_03208 0.48 +0.8
59,834 + MPMX26_03208 0.48 -0.8

Or see this region's nucleotide sequence