Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_03122

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_03121 and MPMX26_03122 are separated by 351 nucleotidesMPMX26_03122 and MPMX26_03123 are separated by 64 nucleotides MPMX26_03121: MPMX26_03121 - hypothetical protein, at 34,658 to 34,900 _03121 MPMX26_03122: MPMX26_03122 - Protein YobA, at 35,252 to 35,632 _03122 MPMX26_03123: MPMX26_03123 - hypothetical protein, at 35,697 to 36,578 _03123 Position (kb) 35 36Strain fitness (log2 ratio) -1 0 1 2at 34.571 kb on - strandat 34.589 kb on - strandat 34.589 kb on - strandat 34.589 kb on - strandat 34.589 kb on - strandat 34.597 kb on - strandat 34.597 kb on - strandat 34.597 kb on - strandat 34.599 kb on - strandat 34.599 kb on - strandat 34.607 kb on - strandat 34.607 kb on - strandat 34.617 kb on - strandat 34.617 kb on - strandat 34.617 kb on - strandat 34.617 kb on - strandat 34.617 kb on - strandat 34.647 kb on - strandat 34.720 kb on - strand, within MPMX26_03121at 34.727 kb on - strand, within MPMX26_03121at 34.727 kb on - strand, within MPMX26_03121at 34.727 kb on - strand, within MPMX26_03121at 34.727 kb on - strand, within MPMX26_03121at 34.812 kb on - strand, within MPMX26_03121at 34.859 kb on - strand, within MPMX26_03121at 35.220 kb on + strandat 35.284 kb on + strandat 35.339 kb on + strand, within MPMX26_03122at 35.339 kb on + strand, within MPMX26_03122at 35.418 kb on + strand, within MPMX26_03122at 35.550 kb on + strand, within MPMX26_03122at 35.562 kb on + strand, within MPMX26_03122at 35.656 kb on - strandat 36.044 kb on + strand, within MPMX26_03123

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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34,571 - -0.2
34,589 - -0.1
34,589 - -0.2
34,589 - +0.1
34,589 - -0.2
34,597 - +0.3
34,597 - -1.0
34,597 - +0.3
34,599 - +0.7
34,599 - +0.1
34,607 - +0.1
34,607 - -0.3
34,617 - +0.9
34,617 - -0.2
34,617 - +0.5
34,617 - +0.8
34,617 - -0.2
34,647 - +0.3
34,720 - MPMX26_03121 0.26 -0.5
34,727 - MPMX26_03121 0.28 +0.4
34,727 - MPMX26_03121 0.28 -0.2
34,727 - MPMX26_03121 0.28 +0.0
34,727 - MPMX26_03121 0.28 +0.4
34,812 - MPMX26_03121 0.63 -0.4
34,859 - MPMX26_03121 0.83 +0.8
35,220 + +1.8
35,284 + -0.2
35,339 + MPMX26_03122 0.23 +0.2
35,339 + MPMX26_03122 0.23 -0.5
35,418 + MPMX26_03122 0.44 +0.9
35,550 + MPMX26_03122 0.78 -0.9
35,562 + MPMX26_03122 0.81 -0.5
35,656 - +0.1
36,044 + MPMX26_03123 0.39 +0.2

Or see this region's nucleotide sequence