Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02886

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02885 and MPMX26_02886 are separated by 276 nucleotidesMPMX26_02886 and MPMX26_02887 are separated by 76 nucleotides MPMX26_02885: MPMX26_02885 - hypothetical protein, at 2,986,580 to 2,987,224 _02885 MPMX26_02886: MPMX26_02886 - hypothetical protein, at 2,987,501 to 2,987,827 _02886 MPMX26_02887: MPMX26_02887 - General stress protein 39, at 2,987,904 to 2,988,770 _02887 Position (kb) 2987 2988Strain fitness (log2 ratio) -1 0 1at 2986.828 kb on + strand, within MPMX26_02885at 2987.011 kb on - strand, within MPMX26_02885at 2987.504 kb on - strandat 2987.619 kb on + strand, within MPMX26_02886at 2987.706 kb on + strand, within MPMX26_02886at 2987.771 kb on + strand, within MPMX26_02886at 2988.099 kb on + strand, within MPMX26_02887at 2988.233 kb on + strand, within MPMX26_02887at 2988.574 kb on + strand, within MPMX26_02887at 2988.578 kb on + strand, within MPMX26_02887at 2988.643 kb on + strand, within MPMX26_02887at 2988.654 kb on + strand, within MPMX26_02887

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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2,986,828 + MPMX26_02885 0.38 -0.4
2,987,011 - MPMX26_02885 0.67 -0.4
2,987,504 - -1.2
2,987,619 + MPMX26_02886 0.36 -0.4
2,987,706 + MPMX26_02886 0.63 -0.2
2,987,771 + MPMX26_02886 0.83 -0.6
2,988,099 + MPMX26_02887 0.22 +1.2
2,988,233 + MPMX26_02887 0.38 +0.6
2,988,574 + MPMX26_02887 0.77 +0.6
2,988,578 + MPMX26_02887 0.78 +0.8
2,988,643 + MPMX26_02887 0.85 +0.6
2,988,654 + MPMX26_02887 0.87 +0.0

Or see this region's nucleotide sequence